Wall clock time and date at job start Mon Mar 30 2020 06:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86805 * 120.00020 * 2 1 4 4 H 1.48501 * 109.46954 * 270.00103 * 3 2 1 5 5 H 1.48501 * 109.46974 * 30.00306 * 3 2 1 6 6 H 1.48499 * 109.46975 * 150.00209 * 3 2 1 7 7 C 1.39865 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99940 * 163.04539 * 7 2 1 9 9 C 1.41131 * 120.00122 * 343.05580 * 7 2 1 10 10 C 1.40894 * 120.15169 * 334.53271 * 9 7 2 11 11 C 1.36340 * 119.83511 * 180.26292 * 10 9 7 12 12 C 1.39575 * 120.16091 * 359.44166 * 11 10 9 13 13 N 1.38850 * 119.84192 * 180.25937 * 12 11 10 14 14 C 1.46502 * 120.00145 * 0.30361 * 13 12 11 15 15 H 1.09003 * 109.46520 * 324.99044 * 14 13 12 16 16 C 1.52991 * 109.47613 * 84.99354 * 14 13 12 17 17 C 1.53008 * 109.47115 * 60.00000 * 16 14 13 18 18 C 1.53001 * 109.46844 * 59.99910 * 17 16 14 19 19 C 1.53000 * 109.47472 * 300.00081 * 18 17 16 20 20 H 1.09002 * 109.46803 * 300.00412 * 19 18 17 21 21 N 1.46895 * 109.47360 * 179.97438 * 19 18 17 22 22 C 1.53001 * 109.46943 * 204.99808 * 14 13 12 23 23 C 1.39573 * 120.31173 * 0.55963 * 12 11 10 24 24 C 1.36335 * 120.16197 * 359.72779 * 23 12 11 25 25 H 0.97001 * 120.00050 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.08185 * 359.97438 * 10 9 7 27 27 H 1.07996 * 119.91770 * 179.69861 * 11 10 9 28 28 H 0.97001 * 119.99827 * 180.29341 * 13 12 11 29 29 H 1.08993 * 109.47381 * 180.02562 * 16 14 13 30 30 H 1.09006 * 109.47294 * 300.00489 * 16 14 13 31 31 H 1.08998 * 109.46857 * 180.02562 * 17 16 14 32 32 H 1.09001 * 109.46829 * 300.00265 * 17 16 14 33 33 H 1.09007 * 109.46781 * 60.00311 * 18 17 16 34 34 H 1.08999 * 109.46582 * 179.97438 * 18 17 16 35 35 H 1.00900 * 110.99836 * 59.99663 * 21 19 18 36 36 H 1.00898 * 110.99903 * 183.95084 * 21 19 18 37 37 H 1.08998 * 109.47534 * 59.99181 * 22 14 13 38 38 H 1.08993 * 109.46880 * 179.97438 * 22 14 13 39 39 H 1.07998 * 119.91625 * 179.74270 * 23 12 11 40 40 H 1.08006 * 120.08043 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 2.4905 2.0464 -1.4001 5 1 1.4405 2.6527 0.7001 6 1 3.5406 1.4402 0.7000 7 6 2.0084 -1.2112 -0.0005 8 1 3.0532 -1.2314 -0.2733 9 6 1.3487 -2.4071 0.3551 10 6 0.2183 -2.3689 1.1952 11 6 -0.4108 -3.5286 1.5390 12 6 0.0555 -4.7505 1.0516 13 7 -0.5935 -5.9271 1.4017 14 6 -1.7687 -5.8834 2.2753 15 1 -1.6465 -5.0865 3.0089 16 6 -3.0191 -5.6160 1.4353 17 6 -3.1905 -6.7345 0.4055 18 6 -3.3387 -8.0749 1.1283 19 6 -2.0883 -8.3423 1.9684 20 1 -1.2139 -8.3747 1.3183 21 7 -2.2308 -9.6288 2.6629 22 6 -1.9169 -7.2237 2.9982 23 6 1.1747 -4.7959 0.2190 24 6 1.8172 -3.6447 -0.1284 25 1 -0.4850 0.8400 0.0004 26 1 -0.1462 -1.4238 1.5696 27 1 -1.2745 -3.5013 2.1868 28 1 -0.2688 -6.7779 1.0676 29 1 -3.8934 -5.5830 2.0853 30 1 -2.9135 -4.6611 0.9203 31 1 -4.0811 -6.5437 -0.1933 32 1 -2.3162 -6.7670 -0.2446 33 1 -4.2131 -8.0423 1.7784 34 1 -3.4613 -8.8716 0.3947 35 1 -2.3458 -10.3845 2.0042 36 1 -1.4464 -9.7985 3.2745 37 1 -1.0260 -7.4143 3.5966 38 1 -2.7910 -7.1910 3.6485 39 1 1.5326 -5.7453 -0.1512 40 1 2.6835 -3.6814 -0.7724 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093212972.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:40 Heat of formation + Delta-G solvation = -10.287360 kcal Electronic energy + Delta-G solvation = -19405.160622 eV Core-core repulsion = 16603.497041 eV Total energy + Delta-G solvation = -2801.663581 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.63610 -39.09863 -36.22234 -34.83619 -33.59644 -31.48899 -31.32044 -29.54993 -28.85564 -26.13396 -23.90899 -22.79148 -22.61773 -21.99436 -19.82887 -19.14277 -18.01042 -16.80911 -16.69193 -16.39796 -16.14633 -15.68128 -15.53107 -15.29333 -14.62598 -14.46782 -13.95275 -13.75625 -13.54539 -13.36015 -13.17108 -12.80140 -12.76369 -12.71982 -12.64245 -12.35482 -12.27461 -11.62003 -11.58160 -11.36202 -11.19858 -11.09739 -10.93068 -10.22333 -9.58428 -9.38574 -8.52989 -8.12397 -5.99470 1.12441 1.19973 1.39932 1.52312 1.59846 2.27952 2.85614 2.92139 3.48402 3.77948 3.83996 3.89827 4.21224 4.24751 4.34083 4.44210 4.50458 4.55003 4.57529 4.69329 4.77796 4.91842 5.04801 5.09339 5.14371 5.18945 5.23973 5.28769 5.32709 5.40369 5.47796 5.49714 5.72561 5.83071 5.98363 6.20224 6.26090 6.41231 6.62575 6.69779 6.90420 7.09949 7.17034 7.34106 8.50079 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.043846 B = 0.004223 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.444025 B = 6628.766129 C = 6874.700101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.032 3.968 3 Si 0.975 3.025 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.262 1.262 7 C -0.508 4.508 8 H 0.066 0.934 9 C 0.034 3.966 10 C -0.141 4.141 11 C -0.174 4.174 12 C 0.120 3.880 13 N -0.739 5.739 14 C 0.161 3.839 15 H 0.060 0.940 16 C -0.134 4.134 17 C -0.109 4.109 18 C -0.102 4.102 19 C 0.096 3.904 20 H 0.030 0.970 21 N -0.849 5.849 22 C -0.107 4.107 23 C -0.170 4.170 24 C -0.195 4.195 25 H 0.281 0.719 26 H 0.097 0.903 27 H 0.105 0.895 28 H 0.392 0.608 29 H 0.077 0.923 30 H 0.038 0.962 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.348 0.652 36 H 0.347 0.653 37 H 0.064 0.936 38 H 0.085 0.915 39 H 0.114 0.886 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.006 -14.194 4.166 15.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.180 4.180 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.186 1.186 7 C -0.540 4.540 8 H 0.084 0.916 9 C 0.031 3.969 10 C -0.161 4.161 11 C -0.196 4.196 12 C 0.021 3.979 13 N -0.374 5.374 14 C 0.054 3.946 15 H 0.078 0.922 16 C -0.173 4.173 17 C -0.147 4.147 18 C -0.140 4.140 19 C -0.015 4.015 20 H 0.048 0.952 21 N -0.380 5.380 22 C -0.146 4.146 23 C -0.192 4.192 24 C -0.215 4.215 25 H 0.091 0.909 26 H 0.115 0.885 27 H 0.123 0.877 28 H 0.227 0.773 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.161 0.839 36 H 0.160 0.840 37 H 0.083 0.917 38 H 0.104 0.896 39 H 0.132 0.868 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.999 -13.668 4.596 16.029 hybrid contribution 1.402 0.596 -0.892 1.765 sum -5.598 -13.073 3.704 14.695 Atomic orbital electron populations 1.69918 1.08709 1.29668 1.38923 1.26585 0.95452 1.04007 0.91905 0.85317 0.79087 0.76695 0.79209 1.19011 1.19323 1.18579 1.19582 0.97578 0.92723 1.44069 0.91557 1.17797 0.93657 0.93004 0.92466 1.20862 0.98794 0.96652 0.99804 1.20251 1.02230 0.91859 1.05228 1.17435 0.94385 0.86768 0.99348 1.44027 1.31997 1.04685 1.56691 1.20708 0.85022 0.97571 0.91284 0.92212 1.21986 0.98284 0.98320 0.98688 1.21366 1.01286 0.94500 0.97583 1.21476 0.97802 0.96361 0.98373 1.21195 0.96591 0.89726 0.93998 0.95248 1.58711 1.50063 1.03697 1.25506 1.21709 1.02797 0.92475 0.97604 1.20075 0.98097 0.97464 1.03568 1.20742 1.02958 0.93018 1.04774 0.90859 0.88510 0.87747 0.77280 0.90425 0.94292 0.91745 0.93201 0.91129 0.91467 0.83852 0.84010 0.91685 0.89625 0.86764 0.88737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.76 10.96 21.82 0.24 -46.52 16 2 C 0.03 1.71 5.15 85.23 0.44 2.15 16 3 Si 0.98 40.69 29.59 68.60 2.03 42.72 16 4 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 6 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 7 C -0.51 -29.02 9.03 23.37 0.21 -28.81 16 8 H 0.07 3.68 7.90 -2.91 -0.02 3.65 16 9 C 0.03 1.90 5.57 -21.27 -0.12 1.78 16 10 C -0.14 -7.70 8.63 22.48 0.19 -7.50 16 11 C -0.17 -8.16 8.76 22.15 0.19 -7.96 16 12 C 0.12 5.06 6.65 38.68 0.26 5.32 16 13 N -0.74 -23.51 4.37 -318.53 -1.39 -24.90 16 14 C 0.16 4.40 2.47 44.99 0.11 4.52 16 15 H 0.06 1.84 6.44 -2.39 -0.02 1.82 16 16 C -0.13 -3.58 5.53 30.59 0.17 -3.41 16 17 C -0.11 -2.56 5.77 30.60 0.18 -2.38 16 18 C -0.10 -1.93 5.50 30.59 0.17 -1.76 16 19 C 0.10 1.79 3.07 44.92 0.14 1.93 16 20 H 0.03 0.59 6.51 -2.39 -0.02 0.57 16 21 N -0.85 -12.85 9.25 -168.68 -1.56 -14.41 16 22 C -0.11 -2.27 5.15 30.60 0.16 -2.11 16 23 C -0.17 -7.47 9.82 22.15 0.22 -7.25 16 24 C -0.19 -9.87 9.74 22.47 0.22 -9.65 16 25 H 0.28 14.20 8.30 -92.71 -0.77 13.43 16 26 H 0.10 5.59 6.19 -2.91 -0.02 5.57 16 27 H 0.10 4.48 6.07 -2.91 -0.02 4.46 16 28 H 0.39 11.05 6.86 -92.71 -0.64 10.41 16 29 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.04 1.29 7.70 -2.38 -0.02 1.27 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.05 1.33 7.60 -2.39 -0.02 1.31 16 33 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.35 4.27 9.04 -89.69 -0.81 3.46 16 36 H 0.35 4.59 8.99 -89.70 -0.81 3.78 16 37 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.11 4.27 8.06 -2.91 -0.02 4.24 16 40 H 0.09 4.56 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -61.67 312.87 0.66 -61.01 By element: Atomic # 1 Polarization: 38.46 SS G_CDS: -1.19 Total: 37.27 kcal Atomic # 6 Polarization: -57.70 SS G_CDS: 2.53 Total: -55.17 kcal Atomic # 7 Polarization: -83.12 SS G_CDS: -2.71 Total: -85.83 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -61.67 0.66 -61.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093212972.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.723 kcal (2) G-P(sol) polarization free energy of solvation -61.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds