Wall clock time and date at job start Mon Mar 30 2020 06:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86794 * 120.00120 * 2 1 4 4 H 1.48502 * 109.47137 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47156 * 299.99975 * 3 2 1 6 6 H 1.48504 * 109.47256 * 59.99957 * 3 2 1 7 7 C 1.39871 * 119.99621 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99696 * 197.97227 * 7 2 1 9 9 C 1.41139 * 119.99945 * 17.96893 * 7 2 1 10 10 C 1.40880 * 120.15294 * 204.60665 * 9 7 2 11 11 C 1.36338 * 119.83420 * 180.02562 * 10 9 7 12 12 C 1.39562 * 120.16489 * 359.97438 * 11 10 9 13 13 N 1.38856 * 119.84886 * 179.97438 * 12 11 10 14 14 C 1.46494 * 120.00621 * 180.02562 * 13 12 11 15 15 H 1.08998 * 109.46884 * 34.99501 * 14 13 12 16 16 C 1.53003 * 109.47060 * 275.00227 * 14 13 12 17 17 C 1.53005 * 109.46849 * 299.99637 * 16 14 13 18 18 C 1.52997 * 109.47204 * 299.99902 * 17 16 14 19 19 C 1.53000 * 109.46795 * 60.00368 * 18 17 16 20 20 H 1.08993 * 109.47636 * 59.99813 * 19 18 17 21 21 N 1.46908 * 109.46958 * 180.02562 * 19 18 17 22 22 C 1.52997 * 109.47488 * 155.00021 * 14 13 12 23 23 C 1.39576 * 120.31241 * 0.25878 * 12 11 10 24 24 C 1.36341 * 120.15979 * 359.48535 * 23 12 11 25 25 H 0.97010 * 119.99922 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.08258 * 359.97438 * 10 9 7 27 27 H 1.08002 * 119.91485 * 179.97438 * 11 10 9 28 28 H 0.97007 * 119.99393 * 0.02562 * 13 12 11 29 29 H 1.08993 * 109.47389 * 179.97438 * 16 14 13 30 30 H 1.08999 * 109.47112 * 59.99610 * 16 14 13 31 31 H 1.09003 * 109.46595 * 179.97438 * 17 16 14 32 32 H 1.08998 * 109.46804 * 60.00377 * 17 16 14 33 33 H 1.08998 * 109.46970 * 300.00337 * 18 17 16 34 34 H 1.08997 * 109.46965 * 179.97438 * 18 17 16 35 35 H 1.00895 * 110.99836 * 299.99711 * 21 19 18 36 36 H 1.00902 * 111.00007 * 63.95161 * 21 19 18 37 37 H 1.09002 * 109.46812 * 299.99897 * 22 14 13 38 38 H 1.08998 * 109.46970 * 180.02562 * 22 14 13 39 39 H 1.07998 * 119.91660 * 179.72065 * 23 12 11 40 40 H 1.08000 * 120.07814 * 180.27540 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.7031 1.3463 0.0006 5 1 1.8843 2.3964 -1.2125 6 1 1.8843 2.3964 1.2125 7 6 2.0083 -1.2114 0.0005 8 1 3.0487 -1.2341 0.2891 9 6 1.3542 -2.4040 -0.3760 10 6 1.8264 -3.6472 0.0888 11 6 1.1898 -4.7953 -0.2794 12 6 0.0727 -4.7409 -1.1142 13 7 -0.5702 -5.9143 -1.4856 14 6 -1.7428 -5.8613 -2.3622 15 1 -1.6218 -5.0520 -3.0822 16 6 -2.9970 -5.6129 -1.5218 17 6 -3.1668 -6.7490 -0.5110 18 6 -3.3071 -8.0778 -1.2561 19 6 -2.0529 -8.3262 -2.0965 20 1 -1.1804 -8.3656 -1.4443 21 7 -2.1878 -9.6019 -2.8124 22 6 -1.8831 -7.1902 -3.1073 23 6 -0.3977 -3.5131 -1.5825 24 6 0.2257 -2.3566 -1.2182 25 1 -0.4850 0.8401 -0.0004 26 1 2.6910 -3.6908 0.7345 27 1 1.5510 -5.7491 0.0758 28 1 -0.2429 -6.7692 -1.1645 29 1 -3.8693 -5.5730 -2.1740 30 1 -2.8970 -4.6662 -0.9910 31 1 -4.0601 -6.5717 0.0880 32 1 -2.2944 -6.7883 0.1412 33 1 -4.1795 -8.0383 -1.9084 34 1 -3.4276 -8.8871 -0.5361 35 1 -2.3015 -10.3686 -2.1666 36 1 -2.9512 -9.5677 -3.4713 37 1 -0.9895 -7.3671 -3.7060 38 1 -2.7552 -7.1505 -3.7598 39 1 -1.2600 -3.4788 -2.2318 40 1 -0.1421 -1.4070 -1.5777 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093212973.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:44 Heat of formation + Delta-G solvation = 5.640140 kcal Electronic energy + Delta-G solvation = -19406.366649 eV Core-core repulsion = 16605.393736 eV Total energy + Delta-G solvation = -2800.972913 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.43077 -37.45833 -34.78426 -33.33735 -32.22373 -30.09425 -29.44548 -27.97548 -27.70149 -24.27669 -22.64885 -21.74867 -20.86977 -20.50755 -18.72510 -17.18007 -16.47984 -16.13373 -15.25645 -14.95797 -14.56409 -14.37521 -13.91599 -13.71745 -13.22935 -12.87779 -12.71447 -12.36065 -12.18279 -12.01871 -11.69372 -11.58819 -11.31289 -11.13702 -11.00980 -10.80782 -10.57246 -10.51910 -10.41486 -10.03780 -9.64987 -9.23692 -9.19564 -8.79790 -8.46481 -7.44980 -6.61076 -6.33471 -3.99327 2.93249 3.13779 3.17395 3.22840 3.38480 4.08172 4.30760 4.40398 4.72804 4.76618 4.81542 5.09262 5.25738 5.33222 5.47813 5.56670 5.64188 5.67279 5.87059 5.92388 6.01033 6.09851 6.20983 6.30689 6.32960 6.42399 6.45214 6.55158 6.97766 6.98556 7.00947 7.24104 7.26515 7.39537 7.61087 7.73247 7.88806 8.19237 8.34223 8.55036 8.75512 8.85156 9.09890 9.19539 10.40552 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.044116 B = 0.004217 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.531437 B = 6638.359415 C = 6879.546449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.075 3.925 3 Si 0.901 3.099 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.278 1.278 7 C -0.467 4.467 8 H 0.072 0.928 9 C 0.073 3.927 10 C -0.186 4.186 11 C -0.161 4.161 12 C 0.097 3.903 13 N -0.752 5.752 14 C 0.165 3.835 15 H 0.074 0.926 16 C -0.137 4.137 17 C -0.110 4.110 18 C -0.150 4.150 19 C 0.091 3.909 20 H 0.080 0.920 21 N -0.846 5.846 22 C -0.116 4.116 23 C -0.165 4.165 24 C -0.124 4.124 25 H 0.275 0.725 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.382 0.618 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.338 0.662 36 H 0.337 0.663 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.210 -12.066 -3.949 14.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.499 4.499 8 H 0.090 0.910 9 C 0.070 3.930 10 C -0.206 4.206 11 C -0.183 4.183 12 C 0.000 4.000 13 N -0.387 5.387 14 C 0.058 3.942 15 H 0.092 0.908 16 C -0.176 4.176 17 C -0.148 4.148 18 C -0.189 4.189 19 C -0.020 4.020 20 H 0.098 0.902 21 N -0.374 5.374 22 C -0.155 4.155 23 C -0.187 4.187 24 C -0.144 4.144 25 H 0.085 0.915 26 H 0.108 0.892 27 H 0.102 0.898 28 H 0.215 0.785 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.150 0.850 36 H 0.149 0.851 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.107 0.893 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.773 -11.665 -4.329 14.166 hybrid contribution -0.631 0.469 0.729 1.072 sum -7.404 -11.196 -3.600 13.897 Atomic orbital electron populations 1.69870 1.07341 1.28403 1.38005 1.25780 0.94635 1.00825 0.92769 0.86386 0.81018 0.81690 0.78276 1.18655 1.19996 1.20330 1.19395 0.97917 0.91396 1.41157 0.90988 1.17488 0.92461 0.91961 0.91088 1.20534 1.02642 0.92654 1.04804 1.19797 0.98066 0.96965 1.03513 1.17351 0.95430 0.85797 1.01444 1.43981 1.32162 1.05635 1.56945 1.20536 0.85895 0.96192 0.91608 0.90840 1.22051 0.97857 0.99266 0.98428 1.21351 1.01699 0.93728 0.98031 1.22390 0.98822 0.98354 0.99369 1.21441 0.97076 0.89021 0.94499 0.90168 1.58955 1.51856 1.04876 1.21685 1.21798 1.02428 0.93719 0.97528 1.20115 1.01853 0.91916 1.04817 1.20937 0.98148 0.96443 0.98843 0.91467 0.89187 0.89755 0.78452 0.92518 0.91029 0.92734 0.91337 0.92429 0.92637 0.84973 0.85120 0.90855 0.91612 0.89330 0.86482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.63 10.96 55.54 0.61 -21.02 16 2 C 0.07 1.95 5.13 -17.34 -0.09 1.86 16 3 Si 0.90 19.42 29.60 -169.99 -5.03 14.39 16 4 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.47 -12.84 9.03 -37.87 -0.34 -13.18 16 8 H 0.07 1.92 7.91 -52.49 -0.41 1.51 16 9 C 0.07 1.99 5.57 -106.80 -0.60 1.39 16 10 C -0.19 -4.66 9.74 -39.27 -0.38 -5.04 16 11 C -0.16 -3.64 9.82 -39.77 -0.39 -4.03 16 12 C 0.10 2.08 6.65 -83.69 -0.56 1.52 16 13 N -0.75 -12.70 4.37 -52.04 -0.23 -12.93 16 14 C 0.17 2.39 2.47 -67.93 -0.17 2.23 16 15 H 0.07 1.17 6.44 -51.93 -0.33 0.84 16 16 C -0.14 -1.89 5.53 -26.73 -0.15 -2.04 16 17 C -0.11 -1.37 5.77 -26.73 -0.15 -1.52 16 18 C -0.15 -1.53 5.49 -26.73 -0.15 -1.67 16 19 C 0.09 0.97 3.08 -67.71 -0.21 0.76 16 20 H 0.08 0.96 6.50 -51.93 -0.34 0.62 16 21 N -0.85 -7.81 9.25 -4.66 -0.04 -7.85 16 22 C -0.12 -1.38 5.15 -26.73 -0.14 -1.52 16 23 C -0.17 -3.83 8.76 -39.77 -0.35 -4.18 16 24 C -0.12 -3.25 8.64 -39.26 -0.34 -3.59 16 25 H 0.27 6.71 8.30 -40.82 -0.34 6.37 16 26 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 27 H 0.08 1.69 8.06 -52.49 -0.42 1.27 16 28 H 0.38 5.97 6.86 -40.82 -0.28 5.69 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 1.19 7.69 -51.93 -0.40 0.79 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.97 7.60 -51.93 -0.39 0.57 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.34 2.64 9.04 -39.29 -0.36 2.28 16 36 H 0.34 2.69 8.98 -39.29 -0.35 2.33 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.09 1.88 6.06 -52.49 -0.32 1.56 16 40 H 0.12 3.20 6.16 -52.49 -0.32 2.88 16 LS Contribution 312.83 15.07 4.71 4.71 Total: -1.00 -27.87 312.83 -10.01 -37.88 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -6.03 Total: 13.84 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: -4.01 Total: -29.02 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.34 Total: -41.80 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.39 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.87 -10.01 -37.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093212973.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.517 kcal (2) G-P(sol) polarization free energy of solvation -27.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds