Wall clock time and date at job start Mon Mar 30 2020 06:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86794 * 120.00120 * 2 1 4 4 H 1.48502 * 109.47137 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47156 * 299.99975 * 3 2 1 6 6 H 1.48504 * 109.47256 * 59.99957 * 3 2 1 7 7 C 1.39871 * 119.99621 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99696 * 197.97227 * 7 2 1 9 9 C 1.41139 * 119.99945 * 17.96893 * 7 2 1 10 10 C 1.40880 * 120.15294 * 204.60665 * 9 7 2 11 11 C 1.36338 * 119.83420 * 180.02562 * 10 9 7 12 12 C 1.39562 * 120.16489 * 359.97438 * 11 10 9 13 13 N 1.38856 * 119.84886 * 179.97438 * 12 11 10 14 14 C 1.46494 * 120.00621 * 180.02562 * 13 12 11 15 15 H 1.08998 * 109.46884 * 34.99501 * 14 13 12 16 16 C 1.53003 * 109.47060 * 275.00227 * 14 13 12 17 17 C 1.53005 * 109.46849 * 299.99637 * 16 14 13 18 18 C 1.52997 * 109.47204 * 299.99902 * 17 16 14 19 19 C 1.53000 * 109.46795 * 60.00368 * 18 17 16 20 20 H 1.08993 * 109.47636 * 59.99813 * 19 18 17 21 21 N 1.46908 * 109.46958 * 180.02562 * 19 18 17 22 22 C 1.52997 * 109.47488 * 155.00021 * 14 13 12 23 23 C 1.39576 * 120.31241 * 0.25878 * 12 11 10 24 24 C 1.36341 * 120.15979 * 359.48535 * 23 12 11 25 25 H 0.97010 * 119.99922 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.08258 * 359.97438 * 10 9 7 27 27 H 1.08002 * 119.91485 * 179.97438 * 11 10 9 28 28 H 0.97007 * 119.99393 * 0.02562 * 13 12 11 29 29 H 1.08993 * 109.47389 * 179.97438 * 16 14 13 30 30 H 1.08999 * 109.47112 * 59.99610 * 16 14 13 31 31 H 1.09003 * 109.46595 * 179.97438 * 17 16 14 32 32 H 1.08998 * 109.46804 * 60.00377 * 17 16 14 33 33 H 1.08998 * 109.46970 * 300.00337 * 18 17 16 34 34 H 1.08997 * 109.46965 * 179.97438 * 18 17 16 35 35 H 1.00895 * 110.99836 * 299.99711 * 21 19 18 36 36 H 1.00902 * 111.00007 * 63.95161 * 21 19 18 37 37 H 1.09002 * 109.46812 * 299.99897 * 22 14 13 38 38 H 1.08998 * 109.46970 * 180.02562 * 22 14 13 39 39 H 1.07998 * 119.91660 * 179.72065 * 23 12 11 40 40 H 1.08000 * 120.07814 * 180.27540 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.7031 1.3463 0.0006 5 1 1.8843 2.3964 -1.2125 6 1 1.8843 2.3964 1.2125 7 6 2.0083 -1.2114 0.0005 8 1 3.0487 -1.2341 0.2891 9 6 1.3542 -2.4040 -0.3760 10 6 1.8264 -3.6472 0.0888 11 6 1.1898 -4.7953 -0.2794 12 6 0.0727 -4.7409 -1.1142 13 7 -0.5702 -5.9143 -1.4856 14 6 -1.7428 -5.8613 -2.3622 15 1 -1.6218 -5.0520 -3.0822 16 6 -2.9970 -5.6129 -1.5218 17 6 -3.1668 -6.7490 -0.5110 18 6 -3.3071 -8.0778 -1.2561 19 6 -2.0529 -8.3262 -2.0965 20 1 -1.1804 -8.3656 -1.4443 21 7 -2.1878 -9.6019 -2.8124 22 6 -1.8831 -7.1902 -3.1073 23 6 -0.3977 -3.5131 -1.5825 24 6 0.2257 -2.3566 -1.2182 25 1 -0.4850 0.8401 -0.0004 26 1 2.6910 -3.6908 0.7345 27 1 1.5510 -5.7491 0.0758 28 1 -0.2429 -6.7692 -1.1645 29 1 -3.8693 -5.5730 -2.1740 30 1 -2.8970 -4.6662 -0.9910 31 1 -4.0601 -6.5717 0.0880 32 1 -2.2944 -6.7883 0.1412 33 1 -4.1795 -8.0383 -1.9084 34 1 -3.4276 -8.8871 -0.5361 35 1 -2.3015 -10.3686 -2.1666 36 1 -2.9512 -9.5677 -3.4713 37 1 -0.9895 -7.3671 -3.7060 38 1 -2.7552 -7.1505 -3.7598 39 1 -1.2600 -3.4788 -2.2318 40 1 -0.1421 -1.4070 -1.5777 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093212973.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:43 Heat of formation + Delta-G solvation = -11.142108 kcal Electronic energy + Delta-G solvation = -19407.094382 eV Core-core repulsion = 16605.393736 eV Total energy + Delta-G solvation = -2801.700646 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.65529 -39.12313 -36.26617 -34.86348 -33.51415 -31.48905 -31.32170 -29.55442 -28.73573 -26.12958 -23.88146 -22.75916 -22.63016 -22.07843 -19.97719 -19.14292 -17.99740 -17.08985 -16.80038 -16.46743 -15.91759 -15.52298 -15.38608 -14.73901 -14.65505 -14.45478 -14.20367 -13.90804 -13.60715 -13.47359 -13.18599 -12.95025 -12.77818 -12.73152 -12.52048 -12.28189 -12.06541 -11.68865 -11.57542 -11.51484 -11.21469 -11.07590 -10.97278 -10.23409 -9.52792 -9.37861 -8.53856 -8.11937 -5.98500 1.12074 1.20354 1.40140 1.54485 1.59151 2.28125 2.85432 2.93595 3.55383 3.78828 3.83481 3.89381 4.15703 4.27061 4.30512 4.43698 4.49746 4.53748 4.59897 4.71121 4.72819 4.86587 5.05021 5.07271 5.15027 5.18174 5.19812 5.28914 5.33964 5.42494 5.46418 5.49360 5.73293 5.83773 5.99141 6.20802 6.28018 6.41999 6.65565 6.70547 6.91462 7.10251 7.18090 7.35228 8.49634 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.044116 B = 0.004217 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.531437 B = 6638.359415 C = 6879.546449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.032 3.968 3 Si 0.976 3.024 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.269 1.269 7 C -0.507 4.507 8 H 0.066 0.934 9 C 0.033 3.967 10 C -0.195 4.195 11 C -0.170 4.170 12 C 0.120 3.880 13 N -0.739 5.739 14 C 0.161 3.839 15 H 0.059 0.941 16 C -0.133 4.133 17 C -0.108 4.108 18 C -0.140 4.140 19 C 0.097 3.903 20 H 0.067 0.933 21 N -0.849 5.849 22 C -0.107 4.107 23 C -0.173 4.173 24 C -0.142 4.142 25 H 0.281 0.719 26 H 0.094 0.906 27 H 0.114 0.886 28 H 0.392 0.608 29 H 0.078 0.922 30 H 0.037 0.963 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.348 0.652 36 H 0.346 0.654 37 H 0.064 0.936 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.175 -13.922 -4.601 16.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.179 4.179 3 Si 0.797 3.203 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.194 1.194 7 C -0.539 4.539 8 H 0.084 0.916 9 C 0.030 3.970 10 C -0.215 4.215 11 C -0.192 4.192 12 C 0.020 3.980 13 N -0.374 5.374 14 C 0.054 3.946 15 H 0.077 0.923 16 C -0.172 4.172 17 C -0.147 4.147 18 C -0.179 4.179 19 C -0.015 4.015 20 H 0.085 0.915 21 N -0.378 5.378 22 C -0.145 4.145 23 C -0.195 4.195 24 C -0.163 4.163 25 H 0.091 0.909 26 H 0.112 0.888 27 H 0.132 0.868 28 H 0.228 0.772 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.162 0.838 36 H 0.160 0.840 37 H 0.083 0.917 38 H 0.104 0.896 39 H 0.123 0.877 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.763 -13.581 -4.993 16.421 hybrid contribution -0.423 0.840 0.893 1.297 sum -8.186 -12.741 -4.101 15.689 Atomic orbital electron populations 1.69932 1.08726 1.29619 1.38813 1.26590 0.95441 1.04023 0.91889 0.85264 0.79385 0.76942 0.78677 1.18502 1.19118 1.19369 1.19609 0.97956 0.92855 1.43433 0.91601 1.17800 0.93649 0.92981 0.92528 1.20734 1.03002 0.92940 1.04870 1.20083 0.98151 0.97471 1.03496 1.17437 0.94470 0.86791 0.99273 1.44032 1.32326 1.04539 1.56518 1.20710 0.85057 0.97667 0.91158 0.92279 1.21985 0.98245 0.98250 0.98728 1.21322 1.01137 0.94561 0.97636 1.22315 0.99026 0.97098 0.99488 1.21286 0.96878 0.89330 0.94004 0.91467 1.58886 1.52579 1.04369 1.21984 1.21696 1.02973 0.92305 0.97544 1.20247 1.02272 0.91796 1.05231 1.20864 0.98856 0.96722 0.99817 0.90851 0.88767 0.86776 0.77219 0.90317 0.94403 0.92134 0.93256 0.91004 0.91348 0.83814 0.84022 0.91722 0.89576 0.87728 0.88460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.70 10.96 21.82 0.24 -46.46 16 2 C 0.03 1.72 5.13 85.23 0.44 2.16 16 3 Si 0.98 40.81 29.60 68.60 2.03 42.84 16 4 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 5 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 6 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 7 C -0.51 -29.09 9.03 23.38 0.21 -28.88 16 8 H 0.07 3.68 7.91 -2.91 -0.02 3.66 16 9 C 0.03 1.89 5.57 -21.27 -0.12 1.77 16 10 C -0.20 -9.99 9.74 22.47 0.22 -9.77 16 11 C -0.17 -7.57 9.82 22.15 0.22 -7.35 16 12 C 0.12 5.10 6.65 38.67 0.26 5.36 16 13 N -0.74 -23.88 4.37 -318.55 -1.39 -25.28 16 14 C 0.16 4.37 2.47 44.99 0.11 4.49 16 15 H 0.06 1.81 6.44 -2.39 -0.02 1.79 16 16 C -0.13 -3.46 5.53 30.60 0.17 -3.29 16 17 C -0.11 -2.46 5.77 30.59 0.18 -2.28 16 18 C -0.14 -2.35 5.49 30.59 0.17 -2.18 16 19 C 0.10 1.76 3.08 44.91 0.14 1.89 16 20 H 0.07 1.42 6.50 -2.39 -0.02 1.40 16 21 N -0.85 -12.65 9.25 -168.67 -1.56 -14.21 16 22 C -0.11 -2.22 5.15 30.59 0.16 -2.06 16 23 C -0.17 -8.18 8.76 22.15 0.19 -7.99 16 24 C -0.14 -7.81 8.64 22.48 0.19 -7.61 16 25 H 0.28 14.15 8.30 -92.70 -0.77 13.38 16 26 H 0.09 4.59 8.06 -2.91 -0.02 4.57 16 27 H 0.11 4.35 8.06 -2.91 -0.02 4.32 16 28 H 0.39 11.41 6.86 -92.70 -0.64 10.77 16 29 H 0.08 1.71 8.14 -2.39 -0.02 1.70 16 30 H 0.04 1.24 7.69 -2.39 -0.02 1.22 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.05 1.31 7.60 -2.39 -0.02 1.29 16 33 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.35 4.19 9.04 -89.70 -0.81 3.38 16 36 H 0.35 4.16 8.98 -89.69 -0.81 3.36 16 37 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.10 4.49 6.06 -2.91 -0.02 4.48 16 40 H 0.10 5.63 6.16 -2.91 -0.02 5.61 16 Total: -1.00 -62.36 312.83 0.66 -61.70 By element: Atomic # 1 Polarization: 38.35 SS G_CDS: -1.19 Total: 37.16 kcal Atomic # 6 Polarization: -58.29 SS G_CDS: 2.53 Total: -55.75 kcal Atomic # 7 Polarization: -83.24 SS G_CDS: -2.71 Total: -85.95 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -62.36 0.66 -61.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093212973.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.560 kcal (2) G-P(sol) polarization free energy of solvation -62.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds