Wall clock time and date at job start Mon Mar 30 2020 06:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30896 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48504 * 109.46885 * 269.99852 * 3 2 1 5 5 H 1.48499 * 109.47032 * 30.00239 * 3 2 1 6 6 H 1.48501 * 109.47297 * 150.00064 * 3 2 1 7 7 C 1.39873 * 120.00163 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99866 * 197.95323 * 7 2 1 9 9 C 1.41140 * 119.99534 * 17.94951 * 7 2 1 10 10 C 1.40880 * 120.15310 * 204.60442 * 9 7 2 11 11 C 1.36340 * 119.83740 * 180.02562 * 10 9 7 12 12 C 1.39574 * 120.15824 * 359.97438 * 11 10 9 13 13 N 1.38860 * 119.83866 * 179.97438 * 12 11 10 14 14 C 1.46497 * 119.99854 * 179.97438 * 13 12 11 15 15 H 1.09004 * 109.47227 * 324.99736 * 14 13 12 16 16 C 1.53001 * 109.47285 * 84.99299 * 14 13 12 17 17 C 1.53003 * 109.47228 * 179.97438 * 16 14 13 18 18 C 1.52995 * 109.47365 * 300.00694 * 17 16 14 19 19 C 1.53001 * 109.47514 * 59.99482 * 18 17 16 20 20 H 1.09000 * 109.46776 * 59.99892 * 19 18 17 21 21 N 1.46897 * 109.47441 * 179.97438 * 19 18 17 22 22 C 1.52995 * 109.47218 * 204.99939 * 14 13 12 23 23 C 1.39562 * 120.31454 * 0.25066 * 12 11 10 24 24 C 1.36332 * 120.16311 * 359.49286 * 23 12 11 25 25 H 0.97008 * 119.99737 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.08171 * 359.97438 * 10 9 7 27 27 H 1.07996 * 119.92192 * 180.02562 * 11 10 9 28 28 H 0.97000 * 120.00475 * 359.97438 * 13 12 11 29 29 H 1.09000 * 109.46776 * 60.00566 * 16 14 13 30 30 H 1.09001 * 109.47468 * 300.00349 * 16 14 13 31 31 H 1.09000 * 109.46662 * 60.00641 * 17 16 14 32 32 H 1.08996 * 109.47050 * 180.02562 * 17 16 14 33 33 H 1.08992 * 109.47453 * 179.97438 * 18 17 16 34 34 H 1.09004 * 109.46855 * 300.00006 * 18 17 16 35 35 H 1.00897 * 111.00395 * 300.00771 * 21 19 18 36 36 H 1.00909 * 110.99279 * 63.95753 * 21 19 18 37 37 H 1.09000 * 109.47187 * 299.99644 * 22 14 13 38 38 H 1.08996 * 109.47569 * 59.99685 * 22 14 13 39 39 H 1.08004 * 119.91514 * 179.72106 * 23 12 11 40 40 H 1.08004 * 120.08988 * 180.23127 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.4905 2.0464 -1.4001 5 1 1.4405 2.6526 0.7001 6 1 3.5406 1.4402 0.7000 7 6 2.0084 -1.2113 -0.0005 8 1 3.0489 -1.2342 0.2877 9 6 1.3541 -2.4037 -0.3778 10 6 1.8265 -3.6473 0.0859 11 6 1.1899 -4.7951 -0.2829 12 6 0.0725 -4.7401 -1.1174 13 7 -0.5705 -5.9133 -1.4894 14 6 -1.7440 -5.8596 -2.3646 15 1 -2.3246 -4.9649 -2.1394 16 6 -1.2896 -5.8184 -3.8250 17 6 -2.5153 -5.7629 -4.7392 18 6 -3.3800 -7.0039 -4.5088 19 6 -3.8344 -7.0451 -3.0484 20 1 -4.4152 -6.1507 -2.8233 21 7 -4.6650 -8.2363 -2.8274 22 6 -2.6092 -7.1003 -2.1344 23 6 -0.3982 -3.5120 -1.5843 24 6 0.2252 -2.3558 -1.2194 25 1 -0.4850 0.8401 -0.0004 26 1 2.6914 -3.6913 0.7313 27 1 1.5507 -5.7491 0.0721 28 1 -0.2427 -6.7684 -1.1697 29 1 -0.7091 -6.7130 -4.0502 30 1 -0.6733 -4.9344 -3.9890 31 1 -3.0962 -4.8685 -4.5141 32 1 -2.1916 -5.7340 -5.7795 33 1 -4.2533 -6.9642 -5.1597 34 1 -2.7990 -7.8983 -4.7339 35 1 -5.4815 -8.2229 -3.4200 36 1 -4.1306 -9.0808 -2.9672 37 1 -2.0287 -7.9949 -2.3596 38 1 -2.9329 -7.1296 -1.0941 39 1 -1.2608 -3.4773 -2.2334 40 1 -0.1423 -1.4058 -1.5785 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093212974.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:46 Heat of formation + Delta-G solvation = -15.299882 kcal Electronic energy + Delta-G solvation = -19189.345274 eV Core-core repulsion = 16387.464333 eV Total energy + Delta-G solvation = -2801.880940 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.46630 -39.17602 -36.49021 -34.92669 -33.68766 -31.45000 -31.35065 -29.51837 -28.60612 -26.13341 -23.78872 -22.82164 -22.71984 -21.46313 -20.80498 -19.14981 -17.89492 -17.01879 -16.79187 -16.62333 -15.93091 -15.42612 -15.29591 -14.93682 -14.62327 -14.46967 -14.22916 -13.89841 -13.65583 -13.62571 -13.34821 -12.94709 -12.75388 -12.66205 -12.31578 -12.18944 -12.06926 -11.70267 -11.60425 -11.55684 -11.37819 -11.10905 -11.00778 -10.27972 -9.54604 -9.39411 -8.54540 -8.14661 -6.00155 1.11343 1.19322 1.39977 1.52680 1.59466 2.27633 2.82243 2.85605 3.56373 3.76469 3.86599 3.96838 4.16225 4.21980 4.27219 4.39340 4.49618 4.53010 4.55239 4.56482 4.71199 4.94533 5.04017 5.08183 5.10095 5.17236 5.18779 5.27323 5.29416 5.38460 5.47085 5.49077 5.71096 5.82458 5.97679 6.19561 6.26398 6.40457 6.65037 6.68589 6.89018 7.09076 7.16673 7.34323 8.48885 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.034932 B = 0.004155 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.371871 B = 6736.909486 C = 7081.397457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.032 3.968 3 Si 0.977 3.023 4 H -0.265 1.265 5 H -0.270 1.270 6 H -0.261 1.261 7 C -0.507 4.507 8 H 0.067 0.933 9 C 0.035 3.965 10 C -0.196 4.196 11 C -0.168 4.168 12 C 0.116 3.884 13 N -0.746 5.746 14 C 0.163 3.837 15 H 0.051 0.949 16 C -0.129 4.129 17 C -0.112 4.112 18 C -0.142 4.142 19 C 0.098 3.902 20 H 0.070 0.930 21 N -0.849 5.849 22 C -0.105 4.105 23 C -0.173 4.173 24 C -0.144 4.144 25 H 0.282 0.718 26 H 0.096 0.904 27 H 0.117 0.883 28 H 0.395 0.605 29 H 0.065 0.935 30 H 0.041 0.959 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.351 0.649 36 H 0.346 0.654 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.103 0.897 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.383 -12.808 -8.893 17.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.180 4.180 3 Si 0.798 3.202 4 H -0.190 1.190 5 H -0.195 1.195 6 H -0.185 1.185 7 C -0.539 4.539 8 H 0.085 0.915 9 C 0.032 3.968 10 C -0.216 4.216 11 C -0.190 4.190 12 C 0.016 3.984 13 N -0.380 5.380 14 C 0.057 3.943 15 H 0.069 0.931 16 C -0.168 4.168 17 C -0.151 4.151 18 C -0.181 4.181 19 C -0.014 4.014 20 H 0.088 0.912 21 N -0.379 5.379 22 C -0.144 4.144 23 C -0.195 4.195 24 C -0.164 4.164 25 H 0.092 0.908 26 H 0.114 0.886 27 H 0.135 0.865 28 H 0.230 0.770 29 H 0.084 0.916 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.164 0.836 36 H 0.159 0.841 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.121 0.879 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.818 -12.330 -8.208 16.749 hybrid contribution 0.802 0.601 -0.649 1.194 sum -7.016 -11.729 -8.858 16.287 Atomic orbital electron populations 1.69925 1.08776 1.29745 1.38608 1.26606 0.95436 1.04077 0.91835 0.85293 0.79048 0.76574 0.79254 1.18954 1.19516 1.18469 1.19605 0.98015 0.92837 1.43419 0.91465 1.17810 0.93626 0.93039 0.92346 1.20750 1.03056 0.92891 1.04900 1.20111 0.97915 0.97639 1.03315 1.17443 0.94765 0.86675 0.99512 1.43978 1.32743 1.04802 1.56447 1.20656 0.86307 0.98126 0.89227 0.93091 1.21986 0.98143 1.01475 0.95178 1.21426 0.95855 0.98461 0.99372 1.22335 1.00055 0.98406 0.97300 1.21263 0.93065 0.94166 0.92905 0.91191 1.58845 1.11452 1.04332 1.63289 1.21634 0.95606 0.97049 1.00096 1.20241 1.01905 0.91870 1.05479 1.20864 0.98946 0.96682 0.99887 0.90791 0.88586 0.86478 0.77046 0.91581 0.94025 0.92415 0.91041 0.90661 0.91244 0.83554 0.84050 0.90722 0.92071 0.87923 0.88428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.80 10.96 21.82 0.24 -46.56 16 2 C 0.03 1.73 5.13 85.23 0.44 2.17 16 3 Si 0.98 40.74 29.60 68.60 2.03 42.77 16 4 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 6 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 7 C -0.51 -29.06 9.03 23.38 0.21 -28.85 16 8 H 0.07 3.74 7.91 -2.91 -0.02 3.72 16 9 C 0.03 1.97 5.57 -21.27 -0.12 1.85 16 10 C -0.20 -10.00 9.74 22.47 0.22 -9.78 16 11 C -0.17 -7.47 9.82 22.15 0.22 -7.26 16 12 C 0.12 4.97 6.65 38.67 0.26 5.23 16 13 N -0.75 -24.63 5.22 -318.54 -1.66 -26.29 16 14 C 0.16 4.59 2.14 44.99 0.10 4.69 16 15 H 0.05 1.68 6.46 -2.39 -0.02 1.66 16 16 C -0.13 -3.31 5.41 30.60 0.17 -3.14 16 17 C -0.11 -2.26 5.92 30.59 0.18 -2.07 16 18 C -0.14 -2.22 5.49 30.59 0.17 -2.05 16 19 C 0.10 1.80 3.24 44.90 0.15 1.94 16 20 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 21 N -0.85 -12.87 9.25 -168.75 -1.56 -14.43 16 22 C -0.11 -2.31 4.93 30.58 0.15 -2.16 16 23 C -0.17 -8.27 8.73 22.14 0.19 -8.07 16 24 C -0.14 -7.92 8.64 22.47 0.19 -7.72 16 25 H 0.28 14.24 8.30 -92.70 -0.77 13.47 16 26 H 0.10 4.65 8.06 -2.91 -0.02 4.63 16 27 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 28 H 0.40 11.31 8.60 -92.71 -0.80 10.51 16 29 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.04 1.31 7.63 -2.39 -0.02 1.29 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.35 4.10 9.04 -89.70 -0.81 3.29 16 36 H 0.35 4.32 8.98 -89.69 -0.81 3.51 16 37 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.10 4.51 6.02 -2.91 -0.02 4.49 16 40 H 0.10 5.67 6.16 -2.91 -0.02 5.65 16 Total: -1.00 -62.85 317.14 0.21 -62.64 By element: Atomic # 1 Polarization: 38.45 SS G_CDS: -1.36 Total: 37.10 kcal Atomic # 6 Polarization: -57.75 SS G_CDS: 2.52 Total: -55.23 kcal Atomic # 7 Polarization: -84.30 SS G_CDS: -2.98 Total: -87.28 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.77 kcal Total: -62.85 0.21 -62.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093212974.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.344 kcal (2) G-P(sol) polarization free energy of solvation -62.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds