Wall clock time and date at job start Mon Mar 30 2020 06:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00433 * 2 1 4 4 H 1.48492 * 109.47103 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46780 * 300.00431 * 3 2 1 6 6 H 1.48501 * 109.46758 * 60.00118 * 3 2 1 7 7 C 1.37878 * 119.99483 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99977 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00209 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47159 * 179.97438 * 9 7 2 11 11 C 1.39678 * 119.99914 * 270.00119 * 10 9 7 12 12 C 1.38910 * 120.07356 * 5.52327 * 11 10 9 13 13 C 1.38109 * 119.92416 * 179.77405 * 12 11 10 14 14 C 1.38288 * 120.07220 * 0.50480 * 13 12 11 15 15 C 1.38291 * 120.14975 * 359.74809 * 14 13 12 16 16 C 1.38100 * 120.07393 * 359.97438 * 15 14 13 17 17 C 1.46495 * 119.99925 * 89.99861 * 10 9 7 18 18 H 1.08997 * 109.50716 * 355.14310 * 17 10 9 19 19 C 1.53120 * 109.50498 * 235.02488 * 17 10 9 20 20 C 1.53118 * 109.15673 * 182.40159 * 19 17 10 21 21 C 1.53039 * 109.27717 * 57.66564 * 20 19 17 22 22 N 1.46844 * 109.51743 * 300.81192 * 21 20 19 23 23 C 1.46846 * 111.19866 * 61.74445 * 22 21 20 24 24 H 0.96997 * 119.99338 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47233 * 59.99954 * 9 7 2 26 26 H 1.09000 * 109.47051 * 299.99822 * 9 7 2 27 27 H 1.07994 * 120.04068 * 0.02562 * 12 11 10 28 28 H 1.08000 * 119.96589 * 180.25521 * 13 12 11 29 29 H 1.07999 * 119.92769 * 179.72411 * 14 13 12 30 30 H 1.07993 * 119.96024 * 180.02562 * 15 14 13 31 31 H 1.08000 * 120.04014 * 179.97438 * 16 15 14 32 32 H 1.09010 * 109.52157 * 302.31440 * 19 17 10 33 33 H 1.08999 * 109.52356 * 62.49671 * 19 17 10 34 34 H 1.08998 * 109.50709 * 297.72473 * 20 19 17 35 35 H 1.08998 * 109.49519 * 177.60634 * 20 19 17 36 36 H 1.09001 * 109.45828 * 180.79312 * 21 20 19 37 37 H 1.09004 * 109.45882 * 60.82433 * 21 20 19 38 38 H 1.00899 * 110.99541 * 185.84668 * 22 21 20 39 39 H 1.09001 * 109.46308 * 58.27639 * 23 22 21 40 40 H 1.09005 * 109.45742 * 178.24303 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2028 -3.6128 0.0005 11 6 2.6567 -4.1436 -1.2091 12 6 2.2975 -3.5453 -2.4102 13 6 2.7517 -4.0700 -3.6042 14 6 3.5548 -5.1958 -3.6055 15 6 3.9099 -5.7970 -2.4118 16 6 3.4638 -5.2741 -1.2140 17 6 2.6788 -4.1695 1.2692 18 1 2.2871 -3.5774 2.0963 19 6 4.2095 -4.1400 1.2983 20 6 4.6997 -4.7781 2.6010 21 6 4.1612 -6.2073 2.6974 22 7 2.6933 -6.1817 2.6662 23 6 2.1988 -5.6163 1.4043 24 1 -0.4849 0.8401 0.0004 25 1 0.6245 -2.5571 -0.8897 26 1 0.6239 -2.5567 0.8903 27 1 1.6670 -2.6685 -2.4101 28 1 2.4763 -3.6029 -4.5382 29 1 3.9050 -5.6068 -4.5408 30 1 4.5375 -6.6758 -2.4164 31 1 3.7412 -5.7443 -0.2821 32 1 4.6008 -4.6995 0.4486 33 1 4.5549 -3.1075 1.2458 34 1 4.3401 -4.1957 3.4493 35 1 5.7894 -4.7984 2.6085 36 1 4.4968 -6.6596 3.6306 37 1 4.5322 -6.7927 1.8561 38 1 2.3122 -7.1025 2.8239 39 1 2.5790 -6.2046 0.5691 40 1 1.1090 -5.6395 1.3984 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093221014.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:28 Heat of formation + Delta-G solvation = 42.243259 kcal Electronic energy + Delta-G solvation = -20150.122758 eV Core-core repulsion = 17350.737076 eV Total energy + Delta-G solvation = -2799.385682 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.74455 -37.65685 -35.21369 -32.76786 -31.62203 -30.67652 -29.60835 -28.80943 -26.17273 -23.52510 -23.11549 -22.46035 -21.57160 -20.15530 -19.42151 -16.78661 -16.45151 -16.03223 -15.12271 -15.04230 -14.46735 -14.20285 -13.86398 -13.67200 -13.59584 -13.22931 -12.82875 -12.54732 -12.41699 -12.21500 -12.01261 -11.38785 -11.28965 -11.05311 -10.88291 -10.73100 -10.57498 -10.39959 -10.32975 -9.88188 -9.80773 -9.65240 -8.87441 -8.49890 -8.33181 -8.20178 -6.48869 -6.01673 -4.15668 2.08057 2.31057 3.25878 3.34088 3.38772 3.90757 4.37987 4.50043 4.58413 5.09625 5.14429 5.17906 5.22916 5.43720 5.47229 5.54871 5.57022 5.71282 5.79882 5.91878 5.94000 6.01114 6.09394 6.15098 6.27862 6.32022 6.43190 6.61713 6.64686 6.70558 6.96433 7.06648 7.12027 7.20065 7.27240 7.36259 7.44690 7.61843 7.82828 8.17219 8.30102 8.51050 8.93814 9.51093 10.96866 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.015016 B = 0.008054 C = 0.006023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.281567 B = 3475.796357 C = 4647.585913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.894 3.106 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.528 4.528 8 H 0.060 0.940 9 C 0.251 3.749 10 N -0.606 5.606 11 C 0.241 3.759 12 C -0.186 4.186 13 C -0.078 4.078 14 C -0.204 4.204 15 C -0.083 4.083 16 C -0.233 4.233 17 C 0.167 3.833 18 H 0.092 0.908 19 C -0.150 4.150 20 C -0.114 4.114 21 C 0.058 3.942 22 N -0.688 5.688 23 C 0.031 3.969 24 H 0.263 0.737 25 H 0.035 0.965 26 H 0.031 0.969 27 H 0.133 0.867 28 H 0.110 0.890 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.128 0.872 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.026 0.974 38 H 0.340 0.660 39 H 0.048 0.952 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.740 -11.970 0.930 13.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.722 3.278 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.567 4.567 8 H 0.078 0.922 9 C 0.131 3.869 10 N -0.311 5.311 11 C 0.134 3.866 12 C -0.209 4.209 13 C -0.097 4.097 14 C -0.224 4.224 15 C -0.102 4.102 16 C -0.255 4.255 17 C 0.061 3.939 18 H 0.110 0.890 19 C -0.188 4.188 20 C -0.153 4.153 21 C -0.072 4.072 22 N -0.319 5.319 23 C -0.099 4.099 24 H 0.073 0.927 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.151 0.849 28 H 0.128 0.872 29 H 0.122 0.878 30 H 0.124 0.876 31 H 0.146 0.854 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.045 0.955 38 H 0.157 0.843 39 H 0.066 0.934 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.430 -11.130 1.477 12.939 hybrid contribution 0.605 0.348 -0.619 0.933 sum 7.036 -10.782 0.858 12.903 Atomic orbital electron populations 1.69942 1.05963 1.26954 1.50525 1.24958 0.94834 0.99201 0.95100 0.86493 0.80152 0.83522 0.77621 1.19761 1.20916 1.20980 1.21614 0.93629 0.90617 1.50805 0.92190 1.19301 0.87115 0.82476 0.97986 1.47226 1.47245 1.35734 1.00864 1.17893 0.91175 0.90679 0.86808 1.20963 1.06050 1.02957 0.90886 1.20832 0.96389 0.95354 0.97122 1.20655 1.05096 0.99580 0.97112 1.20693 0.98556 0.98502 0.92455 1.21084 1.06479 0.99628 0.98314 1.20694 0.93156 0.92642 0.87393 0.88960 1.22305 0.96463 1.02193 0.97808 1.21556 0.99476 0.95511 0.98737 1.21937 0.88040 0.97184 1.00018 1.60173 1.07652 1.28194 1.35877 1.22708 1.00363 0.96786 0.90017 0.92749 0.94755 0.95149 0.84928 0.87154 0.87753 0.87636 0.85429 0.90385 0.91116 0.91149 0.91797 0.91139 0.95547 0.84299 0.93406 0.90784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.53 -14.25 9.33 -34.44 -0.32 -14.57 16 8 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 9 C 0.25 6.22 4.75 -5.19 -0.02 6.19 16 10 N -0.61 -12.66 2.52 -165.45 -0.42 -13.08 16 11 C 0.24 4.82 6.13 -83.79 -0.51 4.31 16 12 C -0.19 -3.80 9.16 -39.38 -0.36 -4.16 16 13 C -0.08 -1.37 10.04 -39.61 -0.40 -1.77 16 14 C -0.20 -3.27 10.04 -39.54 -0.40 -3.67 16 15 C -0.08 -1.32 10.04 -39.61 -0.40 -1.72 16 16 C -0.23 -4.03 6.80 -39.38 -0.27 -4.30 16 17 C 0.17 3.01 2.70 -67.85 -0.18 2.83 16 18 H 0.09 1.85 7.84 -51.93 -0.41 1.44 16 19 C -0.15 -2.44 5.03 -26.61 -0.13 -2.58 16 20 C -0.11 -1.51 6.09 -26.65 -0.16 -1.67 16 21 C 0.06 0.68 6.55 -3.83 -0.03 0.65 16 22 N -0.69 -8.94 6.84 -113.82 -0.78 -9.72 16 23 C 0.03 0.48 5.72 -3.84 -0.02 0.46 16 24 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.03 0.90 6.44 -51.93 -0.33 0.57 16 26 H 0.03 0.80 7.97 -51.93 -0.41 0.39 16 27 H 0.13 2.99 6.26 -52.49 -0.33 2.66 16 28 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.10 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.13 2.05 3.38 -52.49 -0.18 1.87 16 32 H 0.08 1.27 4.55 -51.92 -0.24 1.03 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.34 3.65 8.90 -39.29 -0.35 3.30 16 39 H 0.05 0.73 4.81 -51.93 -0.25 0.48 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 310.65 15.07 4.68 4.68 Total: -1.00 -28.13 310.65 -9.95 -38.08 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -5.85 Total: 6.97 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: -3.30 Total: -18.41 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: -0.46 Total: -47.65 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.13 -9.95 -38.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093221014.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.328 kcal (2) G-P(sol) polarization free energy of solvation -28.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds