Wall clock time and date at job start Mon Mar 30 2020 06:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00433 * 2 1 4 4 H 1.48492 * 109.47103 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46780 * 300.00431 * 3 2 1 6 6 H 1.48501 * 109.46758 * 60.00118 * 3 2 1 7 7 C 1.37878 * 119.99483 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99977 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00209 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47159 * 179.97438 * 9 7 2 11 11 C 1.39678 * 119.99914 * 270.00119 * 10 9 7 12 12 C 1.38910 * 120.07356 * 5.52327 * 11 10 9 13 13 C 1.38109 * 119.92416 * 179.77405 * 12 11 10 14 14 C 1.38288 * 120.07220 * 0.50480 * 13 12 11 15 15 C 1.38291 * 120.14975 * 359.74809 * 14 13 12 16 16 C 1.38100 * 120.07393 * 359.97438 * 15 14 13 17 17 C 1.46495 * 119.99925 * 89.99861 * 10 9 7 18 18 H 1.08997 * 109.50716 * 355.14310 * 17 10 9 19 19 C 1.53120 * 109.50498 * 235.02488 * 17 10 9 20 20 C 1.53118 * 109.15673 * 182.40159 * 19 17 10 21 21 C 1.53039 * 109.27717 * 57.66564 * 20 19 17 22 22 N 1.46844 * 109.51743 * 300.81192 * 21 20 19 23 23 C 1.46846 * 111.19866 * 61.74445 * 22 21 20 24 24 H 0.96997 * 119.99338 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47233 * 59.99954 * 9 7 2 26 26 H 1.09000 * 109.47051 * 299.99822 * 9 7 2 27 27 H 1.07994 * 120.04068 * 0.02562 * 12 11 10 28 28 H 1.08000 * 119.96589 * 180.25521 * 13 12 11 29 29 H 1.07999 * 119.92769 * 179.72411 * 14 13 12 30 30 H 1.07993 * 119.96024 * 180.02562 * 15 14 13 31 31 H 1.08000 * 120.04014 * 179.97438 * 16 15 14 32 32 H 1.09010 * 109.52157 * 302.31440 * 19 17 10 33 33 H 1.08999 * 109.52356 * 62.49671 * 19 17 10 34 34 H 1.08998 * 109.50709 * 297.72473 * 20 19 17 35 35 H 1.08998 * 109.49519 * 177.60634 * 20 19 17 36 36 H 1.09001 * 109.45828 * 180.79312 * 21 20 19 37 37 H 1.09004 * 109.45882 * 60.82433 * 21 20 19 38 38 H 1.00899 * 110.99541 * 185.84668 * 22 21 20 39 39 H 1.09001 * 109.46308 * 58.27639 * 23 22 21 40 40 H 1.09005 * 109.45742 * 178.24303 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2028 -3.6128 0.0005 11 6 2.6567 -4.1436 -1.2091 12 6 2.2975 -3.5453 -2.4102 13 6 2.7517 -4.0700 -3.6042 14 6 3.5548 -5.1958 -3.6055 15 6 3.9099 -5.7970 -2.4118 16 6 3.4638 -5.2741 -1.2140 17 6 2.6788 -4.1695 1.2692 18 1 2.2871 -3.5774 2.0963 19 6 4.2095 -4.1400 1.2983 20 6 4.6997 -4.7781 2.6010 21 6 4.1612 -6.2073 2.6974 22 7 2.6933 -6.1817 2.6662 23 6 2.1988 -5.6163 1.4043 24 1 -0.4849 0.8401 0.0004 25 1 0.6245 -2.5571 -0.8897 26 1 0.6239 -2.5567 0.8903 27 1 1.6670 -2.6685 -2.4101 28 1 2.4763 -3.6029 -4.5382 29 1 3.9050 -5.6068 -4.5408 30 1 4.5375 -6.6758 -2.4164 31 1 3.7412 -5.7443 -0.2821 32 1 4.6008 -4.6995 0.4486 33 1 4.5549 -3.1075 1.2458 34 1 4.3401 -4.1957 3.4493 35 1 5.7894 -4.7984 2.6085 36 1 4.4968 -6.6596 3.6306 37 1 4.5322 -6.7927 1.8561 38 1 2.3122 -7.1025 2.8239 39 1 2.5790 -6.2046 0.5691 40 1 1.1090 -5.6395 1.3984 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093221014.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:27 Heat of formation + Delta-G solvation = 25.504009 kcal Electronic energy + Delta-G solvation = -20150.848627 eV Core-core repulsion = 17350.737076 eV Total energy + Delta-G solvation = -2800.111551 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.14316 -38.92355 -36.75035 -34.75223 -32.86821 -32.05719 -30.96627 -30.45052 -27.94842 -24.89011 -24.72027 -23.80308 -23.03253 -21.50590 -20.79647 -18.59937 -18.06298 -17.43226 -16.76171 -16.43491 -15.99912 -15.53528 -15.20799 -15.10690 -14.87200 -14.65861 -14.31143 -14.16233 -13.83528 -13.60884 -13.44591 -13.15258 -12.91951 -12.64649 -12.58290 -12.29352 -12.11029 -11.91705 -11.77707 -11.41284 -11.33482 -11.19052 -10.65426 -10.46854 -9.65948 -9.32623 -8.37437 -7.83419 -6.37329 0.67982 0.91174 1.33996 1.35319 1.47607 2.30569 2.48106 3.05458 3.14756 3.39582 3.83637 3.91676 4.07423 4.14768 4.24533 4.29867 4.35047 4.45371 4.63952 4.66969 4.68862 4.76712 4.79690 4.88589 4.98258 5.02652 5.10836 5.13478 5.15746 5.31351 5.34775 5.40488 5.61067 5.69593 5.75199 5.88283 6.01344 6.07430 6.22846 6.50954 6.55181 6.83761 6.95756 7.34351 8.82975 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.015016 B = 0.008054 C = 0.006023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.281567 B = 3475.796357 C = 4647.585913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.012 3.988 3 Si 0.960 3.040 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.535 4.535 8 H 0.047 0.953 9 C 0.271 3.729 10 N -0.617 5.617 11 C 0.216 3.784 12 C -0.220 4.220 13 C -0.082 4.082 14 C -0.195 4.195 15 C -0.077 4.077 16 C -0.228 4.228 17 C 0.164 3.836 18 H 0.060 0.940 19 C -0.141 4.141 20 C -0.111 4.111 21 C 0.059 3.941 22 N -0.693 5.693 23 C 0.047 3.953 24 H 0.267 0.733 25 H 0.010 0.990 26 H 0.004 0.996 27 H 0.095 0.905 28 H 0.128 0.872 29 H 0.140 0.860 30 H 0.147 0.853 31 H 0.144 0.856 32 H 0.084 0.916 33 H 0.040 0.960 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.040 0.960 38 H 0.356 0.644 39 H 0.055 0.945 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.241 -14.135 0.552 16.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.187 4.187 3 Si 0.785 3.215 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.574 4.574 8 H 0.066 0.934 9 C 0.149 3.851 10 N -0.324 5.324 11 C 0.111 3.889 12 C -0.243 4.243 13 C -0.100 4.100 14 C -0.215 4.215 15 C -0.095 4.095 16 C -0.250 4.250 17 C 0.059 3.941 18 H 0.078 0.922 19 C -0.180 4.180 20 C -0.149 4.149 21 C -0.070 4.070 22 N -0.327 5.327 23 C -0.084 4.084 24 H 0.076 0.924 25 H 0.028 0.972 26 H 0.022 0.978 27 H 0.113 0.887 28 H 0.146 0.854 29 H 0.158 0.842 30 H 0.165 0.835 31 H 0.161 0.839 32 H 0.102 0.898 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.116 0.884 37 H 0.058 0.942 38 H 0.176 0.824 39 H 0.073 0.927 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.948 -13.336 1.097 16.097 hybrid contribution -0.156 0.957 -0.566 1.123 sum 8.792 -12.379 0.531 15.193 Atomic orbital electron populations 1.70048 1.07341 1.27967 1.51279 1.25769 0.95677 1.02616 0.94649 0.85477 0.78735 0.79303 0.77998 1.19601 1.20156 1.20068 1.21770 0.93038 0.91959 1.50633 0.93426 1.18737 0.87353 0.83626 0.95339 1.47023 1.47419 1.35430 1.02513 1.18149 0.92631 0.92100 0.85977 1.20875 1.07591 1.03019 0.92817 1.21080 0.96310 0.96055 0.96589 1.21087 1.03291 0.98187 0.98903 1.21183 0.97741 0.99141 0.91429 1.21275 1.05386 0.98352 0.99971 1.20780 0.94429 0.93773 0.85121 0.92157 1.22221 0.94814 1.00858 1.00067 1.21570 1.00948 0.96242 0.96129 1.22007 0.86816 0.96116 1.02014 1.60098 1.08920 1.29421 1.34243 1.22409 0.99483 0.94910 0.91557 0.92445 0.97245 0.97800 0.88730 0.85447 0.84174 0.83525 0.83931 0.89774 0.94144 0.92275 0.89373 0.88424 0.94190 0.82382 0.92687 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.30 13.29 21.45 0.28 -55.01 16 2 C 0.01 0.68 5.46 84.65 0.46 1.15 16 3 Si 0.96 45.03 29.54 68.60 2.03 47.06 16 4 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 7 C -0.54 -30.66 9.33 25.60 0.24 -30.43 16 8 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 9 C 0.27 14.58 4.75 85.63 0.41 14.98 16 10 N -0.62 -27.39 2.52 -677.38 -1.71 -29.09 16 11 C 0.22 8.87 6.13 38.21 0.23 9.10 16 12 C -0.22 -9.39 9.16 22.40 0.21 -9.19 16 13 C -0.08 -2.80 10.04 22.25 0.22 -2.58 16 14 C -0.19 -5.56 10.04 22.29 0.22 -5.34 16 15 C -0.08 -2.12 10.04 22.25 0.22 -1.90 16 16 C -0.23 -7.48 6.80 22.40 0.15 -7.33 16 17 C 0.16 6.16 2.70 45.04 0.12 6.28 16 18 H 0.06 2.60 7.84 -2.39 -0.02 2.58 16 19 C -0.14 -4.61 5.03 30.67 0.15 -4.46 16 20 C -0.11 -2.72 6.09 30.65 0.19 -2.53 16 21 C 0.06 1.20 6.55 86.33 0.57 1.77 16 22 N -0.69 -16.73 6.84 -514.00 -3.52 -20.25 16 23 C 0.05 1.42 5.72 86.33 0.49 1.91 16 24 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 25 H 0.01 0.55 6.44 -2.38 -0.02 0.54 16 26 H 0.00 0.23 7.97 -2.39 -0.02 0.21 16 27 H 0.09 4.68 6.26 -2.91 -0.02 4.66 16 28 H 0.13 3.80 8.06 -2.91 -0.02 3.78 16 29 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 30 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 31 H 0.14 4.19 3.38 -2.91 -0.01 4.18 16 32 H 0.08 2.62 4.55 -2.38 -0.01 2.61 16 33 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 38 H 0.36 6.73 8.90 -89.69 -0.80 5.93 16 39 H 0.06 1.59 4.81 -2.39 -0.01 1.58 16 40 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 Total: -1.00 -64.65 310.65 1.22 -63.43 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 0.24 Total: 22.42 kcal Atomic # 6 Polarization: -32.45 SS G_CDS: 3.89 Total: -28.56 kcal Atomic # 7 Polarization: -99.42 SS G_CDS: -4.94 Total: -104.36 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -64.65 1.22 -63.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093221014.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.934 kcal (2) G-P(sol) polarization free energy of solvation -64.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds