Wall clock time and date at job start Mon Mar 30 2020 06:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99992 * 2 1 4 4 H 1.48503 * 109.47059 * 269.99874 * 3 2 1 5 5 H 1.48501 * 109.47093 * 29.99725 * 3 2 1 6 6 H 1.48502 * 109.47153 * 150.00166 * 3 2 1 7 7 C 1.37875 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00122 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00122 * 179.97438 * 7 2 1 10 10 N 1.46495 * 109.47337 * 180.02562 * 9 7 2 11 11 C 1.39676 * 119.99975 * 270.00167 * 10 9 7 12 12 C 1.38907 * 120.07401 * 5.47170 * 11 10 9 13 13 C 1.38107 * 119.92528 * 179.77147 * 12 11 10 14 14 C 1.38284 * 120.07281 * 0.49992 * 13 12 11 15 15 C 1.38284 * 120.15220 * 359.74503 * 14 13 12 16 16 C 1.38113 * 120.07103 * 0.02562 * 15 14 13 17 17 C 1.46500 * 120.00110 * 90.00291 * 10 9 7 18 18 H 1.08996 * 109.50344 * 175.34685 * 17 10 9 19 19 C 1.53122 * 109.53574 * 295.40223 * 17 10 9 20 20 C 1.53117 * 109.15873 * 177.57610 * 19 17 10 21 21 C 1.53037 * 109.31124 * 302.40055 * 20 19 17 22 22 N 1.46845 * 109.51819 * 59.16206 * 21 20 19 23 23 C 1.46852 * 111.20024 * 298.25615 * 22 21 20 24 24 H 0.97000 * 120.00164 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46496 * 60.00433 * 9 7 2 26 26 H 1.08996 * 109.47316 * 300.00449 * 9 7 2 27 27 H 1.07997 * 120.04198 * 359.97438 * 12 11 10 28 28 H 1.08001 * 119.96694 * 180.25228 * 13 12 11 29 29 H 1.08006 * 119.92550 * 179.72881 * 14 13 12 30 30 H 1.08000 * 119.96542 * 180.02562 * 15 14 13 31 31 H 1.07999 * 120.03278 * 179.97438 * 16 15 14 32 32 H 1.09000 * 109.49480 * 57.68825 * 19 17 10 33 33 H 1.09005 * 109.55757 * 297.49659 * 19 17 10 34 34 H 1.09001 * 109.50382 * 182.44636 * 20 19 17 35 35 H 1.08995 * 109.50321 * 62.36860 * 20 19 17 36 36 H 1.08993 * 109.46274 * 179.17246 * 21 20 19 37 37 H 1.09001 * 109.46266 * 299.15907 * 21 20 19 38 38 H 1.00900 * 111.00226 * 174.15895 * 22 21 20 39 39 H 1.09001 * 109.46201 * 181.76025 * 23 22 21 40 40 H 1.09003 * 109.45976 * 301.73722 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 3.9999 -2.5752 0.0001 11 6 4.2332 -3.2334 1.2098 12 6 3.8961 -2.6225 2.4109 13 6 4.1237 -3.2780 3.6050 14 6 4.6960 -4.5368 3.6062 15 6 5.0375 -5.1458 2.4126 16 6 4.8082 -4.4978 1.2147 17 6 4.2437 -3.2661 -1.2686 18 1 4.6786 -4.2459 -1.0716 19 6 2.9211 -3.4367 -2.0211 20 6 3.1938 -4.1049 -3.3715 21 6 4.1894 -3.2553 -4.1646 22 7 5.4378 -3.1231 -3.4026 23 6 5.2089 -2.4408 -2.1225 24 1 -0.4850 0.8400 0.0004 25 1 3.8751 -0.6797 0.8895 26 1 3.8746 -0.6808 -0.8904 27 1 3.4535 -1.6373 2.4109 28 1 3.8582 -2.8053 4.5390 29 1 4.8770 -5.0455 4.5417 30 1 5.4839 -6.1292 2.4171 31 1 5.0755 -4.9738 0.2828 32 1 2.4662 -2.4596 -2.1833 33 1 2.2461 -4.0611 -1.4356 34 1 2.2618 -4.1897 -3.9304 35 1 3.6119 -5.0981 -3.2082 36 1 4.3966 -3.7362 -5.1204 37 1 3.7647 -2.2668 -4.3397 38 1 6.1436 -2.6477 -3.9446 39 1 6.1565 -2.3302 -1.5954 40 1 4.7791 -1.4563 -2.3075 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093221015.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:31 Heat of formation + Delta-G solvation = 35.440943 kcal Electronic energy + Delta-G solvation = -20107.492995 eV Core-core repulsion = 17307.812342 eV Total energy + Delta-G solvation = -2799.680653 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.39468 -37.90187 -35.24032 -32.63912 -31.54064 -30.57442 -30.00183 -28.93770 -26.49080 -23.49258 -23.21290 -22.23164 -21.32783 -20.10142 -18.81480 -17.14893 -16.87777 -16.39606 -14.97295 -14.82347 -14.42547 -14.21863 -13.91866 -13.61883 -13.52830 -13.02978 -12.96266 -12.70904 -12.44796 -12.32033 -12.17562 -11.61332 -11.43697 -10.91091 -10.81270 -10.72682 -10.52687 -10.46404 -10.12697 -10.03232 -9.91095 -9.43960 -8.97582 -8.67781 -8.31215 -8.29886 -6.43959 -6.15653 -4.14230 2.06979 2.27935 3.17633 3.26784 3.27977 3.82780 4.30214 4.48197 4.57145 5.13736 5.16850 5.22619 5.27266 5.42671 5.51899 5.54448 5.63106 5.74345 5.84110 5.97394 6.04894 6.09483 6.15993 6.17253 6.27596 6.34031 6.38608 6.57151 6.65585 6.72564 6.82011 7.01199 7.05380 7.09608 7.14494 7.25526 7.46473 7.52607 7.56691 8.07438 8.36974 8.51809 8.93595 9.44770 10.97067 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.011643 B = 0.010449 C = 0.006343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.392646 B = 2679.111585 C = 4413.238008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.867 3.133 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.527 4.527 8 H 0.080 0.920 9 C 0.220 3.780 10 N -0.603 5.603 11 C 0.239 3.761 12 C -0.186 4.186 13 C -0.077 4.077 14 C -0.201 4.201 15 C -0.078 4.078 16 C -0.217 4.217 17 C 0.161 3.839 18 H 0.086 0.914 19 C -0.130 4.130 20 C -0.115 4.115 21 C 0.056 3.944 22 N -0.688 5.688 23 C 0.046 3.954 24 H 0.264 0.736 25 H 0.029 0.971 26 H 0.022 0.978 27 H 0.130 0.870 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.031 0.969 38 H 0.339 0.661 39 H 0.071 0.929 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.169 -6.284 -2.820 12.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.130 4.130 3 Si 0.694 3.306 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.566 4.566 8 H 0.098 0.902 9 C 0.098 3.902 10 N -0.309 5.309 11 C 0.134 3.866 12 C -0.208 4.208 13 C -0.096 4.096 14 C -0.222 4.222 15 C -0.097 4.097 16 C -0.240 4.240 17 C 0.056 3.944 18 H 0.104 0.896 19 C -0.169 4.169 20 C -0.153 4.153 21 C -0.073 4.073 22 N -0.319 5.319 23 C -0.084 4.084 24 H 0.074 0.926 25 H 0.047 0.953 26 H 0.040 0.960 27 H 0.147 0.853 28 H 0.129 0.871 29 H 0.124 0.876 30 H 0.127 0.873 31 H 0.134 0.866 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.050 0.950 38 H 0.157 0.843 39 H 0.090 0.910 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 9.915 -6.652 -2.740 12.250 hybrid contribution 0.038 1.952 -0.336 1.981 sum 9.952 -4.700 -3.075 11.428 Atomic orbital electron populations 1.69894 1.06124 1.26892 1.50305 1.24888 0.94685 0.98683 0.94746 0.86994 0.80569 0.84425 0.78627 1.20268 1.20938 1.18950 1.21489 0.89346 0.94775 1.50969 0.90224 1.19627 0.95488 0.78374 0.96670 1.46756 1.68683 1.14205 1.01263 1.17873 0.91279 0.90995 0.86429 1.20883 1.06630 1.02367 0.90932 1.20828 0.97090 0.94613 0.97081 1.20685 1.07245 0.97042 0.97224 1.20694 0.98381 0.98403 0.92250 1.20647 1.09120 0.96101 0.98140 1.20776 0.94539 0.95552 0.83543 0.89590 1.22029 0.97377 1.02874 0.94616 1.21579 0.98040 0.99122 0.96595 1.21946 0.90327 0.98838 0.96188 1.60237 1.09967 1.56028 1.05682 1.22316 0.99546 0.96105 0.90429 0.92583 0.95278 0.96012 0.85259 0.87058 0.87574 0.87292 0.86611 0.89586 0.91780 0.91667 0.91796 0.91255 0.95030 0.84348 0.91039 0.94204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.42 13.96 55.43 0.77 -25.65 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.87 20.46 27.47 -169.99 -4.67 15.79 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.26 -5.99 6.54 56.52 0.37 -5.62 16 7 C -0.53 -14.04 8.29 -34.44 -0.29 -14.32 16 8 H 0.08 2.38 7.84 -52.48 -0.41 1.97 16 9 C 0.22 5.00 3.42 -5.19 -0.02 4.98 16 10 N -0.60 -12.22 2.53 -165.46 -0.42 -12.64 16 11 C 0.24 4.76 6.54 -83.79 -0.55 4.21 16 12 C -0.19 -3.72 9.16 -39.38 -0.36 -4.08 16 13 C -0.08 -1.34 10.04 -39.61 -0.40 -1.74 16 14 C -0.20 -3.20 10.04 -39.55 -0.40 -3.60 16 15 C -0.08 -1.24 10.04 -39.61 -0.40 -1.64 16 16 C -0.22 -3.81 9.31 -39.38 -0.37 -4.17 16 17 C 0.16 2.83 2.63 -67.85 -0.18 2.65 16 18 H 0.09 1.46 5.31 -51.93 -0.28 1.18 16 19 C -0.13 -2.36 4.77 -26.61 -0.13 -2.49 16 20 C -0.11 -1.66 6.09 -26.65 -0.16 -1.82 16 21 C 0.06 0.74 6.55 -3.84 -0.03 0.72 16 22 N -0.69 -9.21 6.84 -113.82 -0.78 -9.99 16 23 C 0.05 0.73 5.74 -3.83 -0.02 0.71 16 24 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.03 0.68 5.50 -51.93 -0.29 0.40 16 26 H 0.02 0.49 5.60 -51.93 -0.29 0.20 16 27 H 0.13 2.80 6.26 -52.49 -0.33 2.47 16 28 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.11 1.42 8.06 -52.48 -0.42 0.99 16 30 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 31 H 0.12 1.87 5.74 -52.49 -0.30 1.57 16 32 H 0.09 1.83 6.77 -51.93 -0.35 1.48 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.34 3.79 8.90 -39.29 -0.35 3.44 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.04 0.69 6.49 -51.93 -0.34 0.36 16 LS Contribution 309.39 15.07 4.66 4.66 Total: -1.00 -28.68 309.39 -9.72 -38.39 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -5.90 Total: 8.12 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -3.38 Total: -18.69 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: -0.42 Total: -48.28 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.67 Total: 15.79 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.68 -9.72 -38.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093221015.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.834 kcal (2) G-P(sol) polarization free energy of solvation -28.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds