Wall clock time and date at job start Mon Mar 30 2020 06:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99992 * 2 1 4 4 H 1.48503 * 109.47059 * 269.99874 * 3 2 1 5 5 H 1.48501 * 109.47093 * 29.99725 * 3 2 1 6 6 H 1.48502 * 109.47153 * 150.00166 * 3 2 1 7 7 C 1.37875 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00122 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00122 * 179.97438 * 7 2 1 10 10 N 1.46495 * 109.47337 * 180.02562 * 9 7 2 11 11 C 1.39676 * 119.99975 * 270.00167 * 10 9 7 12 12 C 1.38907 * 120.07401 * 5.47170 * 11 10 9 13 13 C 1.38107 * 119.92528 * 179.77147 * 12 11 10 14 14 C 1.38284 * 120.07281 * 0.49992 * 13 12 11 15 15 C 1.38284 * 120.15220 * 359.74503 * 14 13 12 16 16 C 1.38113 * 120.07103 * 0.02562 * 15 14 13 17 17 C 1.46500 * 120.00110 * 90.00291 * 10 9 7 18 18 H 1.08996 * 109.50344 * 175.34685 * 17 10 9 19 19 C 1.53122 * 109.53574 * 295.40223 * 17 10 9 20 20 C 1.53117 * 109.15873 * 177.57610 * 19 17 10 21 21 C 1.53037 * 109.31124 * 302.40055 * 20 19 17 22 22 N 1.46845 * 109.51819 * 59.16206 * 21 20 19 23 23 C 1.46852 * 111.20024 * 298.25615 * 22 21 20 24 24 H 0.97000 * 120.00164 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46496 * 60.00433 * 9 7 2 26 26 H 1.08996 * 109.47316 * 300.00449 * 9 7 2 27 27 H 1.07997 * 120.04198 * 359.97438 * 12 11 10 28 28 H 1.08001 * 119.96694 * 180.25228 * 13 12 11 29 29 H 1.08006 * 119.92550 * 179.72881 * 14 13 12 30 30 H 1.08000 * 119.96542 * 180.02562 * 15 14 13 31 31 H 1.07999 * 120.03278 * 179.97438 * 16 15 14 32 32 H 1.09000 * 109.49480 * 57.68825 * 19 17 10 33 33 H 1.09005 * 109.55757 * 297.49659 * 19 17 10 34 34 H 1.09001 * 109.50382 * 182.44636 * 20 19 17 35 35 H 1.08995 * 109.50321 * 62.36860 * 20 19 17 36 36 H 1.08993 * 109.46274 * 179.17246 * 21 20 19 37 37 H 1.09001 * 109.46266 * 299.15907 * 21 20 19 38 38 H 1.00900 * 111.00226 * 174.15895 * 22 21 20 39 39 H 1.09001 * 109.46201 * 181.76025 * 23 22 21 40 40 H 1.09003 * 109.45976 * 301.73722 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 3.9999 -2.5752 0.0001 11 6 4.2332 -3.2334 1.2098 12 6 3.8961 -2.6225 2.4109 13 6 4.1237 -3.2780 3.6050 14 6 4.6960 -4.5368 3.6062 15 6 5.0375 -5.1458 2.4126 16 6 4.8082 -4.4978 1.2147 17 6 4.2437 -3.2661 -1.2686 18 1 4.6786 -4.2459 -1.0716 19 6 2.9211 -3.4367 -2.0211 20 6 3.1938 -4.1049 -3.3715 21 6 4.1894 -3.2553 -4.1646 22 7 5.4378 -3.1231 -3.4026 23 6 5.2089 -2.4408 -2.1225 24 1 -0.4850 0.8400 0.0004 25 1 3.8751 -0.6797 0.8895 26 1 3.8746 -0.6808 -0.8904 27 1 3.4535 -1.6373 2.4109 28 1 3.8582 -2.8053 4.5390 29 1 4.8770 -5.0455 4.5417 30 1 5.4839 -6.1292 2.4171 31 1 5.0755 -4.9738 0.2828 32 1 2.4662 -2.4596 -2.1833 33 1 2.2461 -4.0611 -1.4356 34 1 2.2618 -4.1897 -3.9304 35 1 3.6119 -5.0981 -3.2082 36 1 4.3966 -3.7362 -5.1204 37 1 3.7647 -2.2668 -4.3397 38 1 6.1436 -2.6477 -3.9446 39 1 6.1565 -2.3302 -1.5954 40 1 4.7791 -1.4563 -2.3075 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093221015.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:30 Heat of formation + Delta-G solvation = 17.536709 kcal Electronic energy + Delta-G solvation = -20108.269381 eV Core-core repulsion = 17307.812342 eV Total energy + Delta-G solvation = -2800.457039 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.81351 -39.19640 -36.70235 -34.67714 -32.83103 -32.00006 -31.36386 -30.61219 -28.08749 -24.94851 -24.70813 -23.68341 -22.74003 -21.49687 -20.25651 -18.99118 -18.55679 -17.66693 -16.63613 -16.18651 -15.99301 -15.59992 -15.24023 -15.04814 -14.90824 -14.65086 -14.45236 -14.24070 -14.02013 -13.71800 -13.45962 -13.35379 -13.08442 -12.52346 -12.31377 -12.24218 -12.06672 -11.85814 -11.74911 -11.50647 -11.40688 -11.21602 -10.81185 -10.50196 -9.68032 -9.46174 -8.31896 -7.95817 -6.34063 0.68753 0.89758 1.28275 1.31383 1.40726 2.28347 2.37391 3.01208 3.15031 3.34693 3.82663 3.91025 4.04396 4.15933 4.23498 4.28305 4.33870 4.48141 4.58757 4.68369 4.73791 4.76586 4.78190 4.81563 4.90257 4.93797 5.00039 5.06475 5.13429 5.26333 5.32334 5.46528 5.50985 5.60922 5.75996 5.87574 5.93727 6.12293 6.25365 6.48858 6.63075 6.73407 6.89438 7.29402 8.85136 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.011643 B = 0.010449 C = 0.006343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.392646 B = 2679.111585 C = 4413.238008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.013 3.987 3 Si 0.935 3.065 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.248 1.248 7 C -0.517 4.517 8 H 0.031 0.969 9 C 0.234 3.766 10 N -0.614 5.614 11 C 0.211 3.789 12 C -0.218 4.218 13 C -0.082 4.082 14 C -0.194 4.194 15 C -0.073 4.073 16 C -0.219 4.219 17 C 0.161 3.839 18 H 0.099 0.901 19 C -0.124 4.124 20 C -0.109 4.109 21 C 0.058 3.942 22 N -0.679 5.679 23 C 0.055 3.945 24 H 0.265 0.735 25 H 0.025 0.975 26 H 0.029 0.971 27 H 0.100 0.900 28 H 0.130 0.870 29 H 0.141 0.859 30 H 0.147 0.853 31 H 0.130 0.870 32 H 0.045 0.955 33 H 0.035 0.965 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.019 0.981 38 H 0.357 0.643 39 H 0.080 0.920 40 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.046 -7.499 -2.992 15.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.185 4.185 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.172 1.172 7 C -0.556 4.556 8 H 0.049 0.951 9 C 0.112 3.888 10 N -0.321 5.321 11 C 0.108 3.892 12 C -0.241 4.241 13 C -0.101 4.101 14 C -0.214 4.214 15 C -0.092 4.092 16 C -0.241 4.241 17 C 0.057 3.943 18 H 0.116 0.884 19 C -0.163 4.163 20 C -0.147 4.147 21 C -0.071 4.071 22 N -0.312 5.312 23 C -0.075 4.075 24 H 0.074 0.926 25 H 0.043 0.957 26 H 0.046 0.954 27 H 0.118 0.882 28 H 0.148 0.852 29 H 0.159 0.841 30 H 0.165 0.835 31 H 0.147 0.853 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.120 0.880 37 H 0.037 0.963 38 H 0.176 0.824 39 H 0.099 0.901 40 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 12.830 -7.895 -2.913 15.343 hybrid contribution -0.899 2.153 -0.199 2.342 sum 11.931 -5.742 -3.112 13.602 Atomic orbital electron populations 1.70056 1.08091 1.27930 1.52458 1.25759 0.95462 1.02743 0.94512 0.85892 0.79672 0.79285 0.79263 1.19086 1.20787 1.17188 1.21590 0.91481 0.92824 1.49685 0.95091 1.19258 0.92583 0.80541 0.96439 1.46698 1.69406 1.13445 1.02559 1.18184 0.92674 0.92286 0.86074 1.20869 1.08639 1.01974 0.92619 1.21105 0.96774 0.95421 0.96761 1.21115 1.05308 0.96117 0.98886 1.21164 0.97034 0.99627 0.91343 1.20880 1.08518 0.95033 0.99718 1.20911 0.94439 0.96237 0.82761 0.88357 1.21908 0.97195 1.00410 0.96815 1.21556 0.99146 0.99596 0.94424 1.21979 0.89785 0.98206 0.97154 1.60219 1.10377 1.55578 1.05001 1.22139 0.99073 0.94805 0.91507 0.92555 0.95681 0.95355 0.88204 0.85239 0.84121 0.83503 0.85281 0.93649 0.94566 0.90983 0.90332 0.87966 0.96308 0.82405 0.90118 0.96251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.69 13.96 21.45 0.30 -58.39 16 2 C 0.01 0.75 5.47 84.65 0.46 1.21 16 3 Si 0.94 43.27 27.47 68.60 1.88 45.16 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 7 C -0.52 -29.21 8.29 25.60 0.21 -29.00 16 8 H 0.03 2.00 7.84 -2.91 -0.02 1.98 16 9 C 0.23 11.07 3.42 85.64 0.29 11.36 16 10 N -0.61 -25.58 2.53 -677.40 -1.71 -27.29 16 11 C 0.21 8.49 6.54 38.21 0.25 8.74 16 12 C -0.22 -8.97 9.16 22.40 0.21 -8.77 16 13 C -0.08 -2.76 10.04 22.25 0.22 -2.53 16 14 C -0.19 -5.55 10.04 22.29 0.22 -5.33 16 15 C -0.07 -2.07 10.04 22.25 0.22 -1.84 16 16 C -0.22 -7.31 9.31 22.40 0.21 -7.10 16 17 C 0.16 5.67 2.63 45.04 0.12 5.79 16 18 H 0.10 3.22 5.31 -2.39 -0.01 3.20 16 19 C -0.12 -4.70 4.77 30.67 0.15 -4.55 16 20 C -0.11 -3.05 6.09 30.65 0.19 -2.86 16 21 C 0.06 1.41 6.55 86.33 0.57 1.98 16 22 N -0.68 -16.52 6.84 -514.01 -3.52 -20.03 16 23 C 0.06 1.69 5.74 86.32 0.50 2.19 16 24 H 0.27 15.45 8.31 -92.71 -0.77 14.67 16 25 H 0.03 1.21 5.50 -2.39 -0.01 1.20 16 26 H 0.03 1.31 5.60 -2.39 -0.01 1.29 16 27 H 0.10 4.59 6.26 -2.91 -0.02 4.57 16 28 H 0.13 3.74 8.06 -2.91 -0.02 3.72 16 29 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 30 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 31 H 0.13 3.88 5.74 -2.91 -0.02 3.86 16 32 H 0.04 2.06 6.77 -2.39 -0.02 2.04 16 33 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.36 6.86 8.90 -89.69 -0.80 6.06 16 39 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.02 0.67 6.49 -2.39 -0.02 0.65 16 Total: -1.00 -66.22 309.39 0.95 -65.27 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: 0.18 Total: 26.01 kcal Atomic # 6 Polarization: -34.53 SS G_CDS: 3.81 Total: -30.72 kcal Atomic # 7 Polarization: -100.79 SS G_CDS: -4.93 Total: -105.72 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.88 Total: 45.16 kcal Total: -66.22 0.95 -65.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093221015.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.806 kcal (2) G-P(sol) polarization free energy of solvation -66.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds