Wall clock time and date at job start Mon Mar 30 2020 06:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99856 * 2 1 4 4 H 1.48499 * 109.47512 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47228 * 300.00415 * 3 2 1 6 6 H 1.48500 * 109.46716 * 60.00109 * 3 2 1 7 7 C 1.37877 * 120.00264 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00033 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99907 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46921 * 179.97438 * 9 7 2 11 11 C 1.39675 * 120.00090 * 269.99507 * 10 9 7 12 12 C 1.38910 * 120.07425 * 5.47279 * 11 10 9 13 13 C 1.38106 * 119.92292 * 179.76464 * 12 11 10 14 14 C 1.38281 * 120.07694 * 0.51260 * 13 12 11 15 15 C 1.38283 * 120.14615 * 359.74345 * 14 13 12 16 16 C 1.38100 * 120.07737 * 359.97438 * 15 14 13 17 17 C 1.46506 * 119.99980 * 89.99994 * 10 9 7 18 18 C 1.53116 * 109.51843 * 295.29335 * 17 10 9 19 19 C 1.53039 * 109.27457 * 177.55716 * 18 17 10 20 20 N 1.46846 * 109.52663 * 300.82464 * 19 18 17 21 21 C 1.46846 * 111.19758 * 61.74241 * 20 19 18 22 22 C 1.53040 * 109.52053 * 298.25590 * 21 20 19 23 23 H 0.97003 * 120.00474 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47241 * 59.99875 * 9 7 2 25 25 H 1.08997 * 109.46979 * 299.99827 * 9 7 2 26 26 H 1.08002 * 120.03890 * 0.02562 * 12 11 10 27 27 H 1.08003 * 119.96012 * 180.25276 * 13 12 11 28 28 H 1.07999 * 119.92748 * 179.71809 * 14 13 12 29 29 H 1.08004 * 119.96057 * 179.97438 * 15 14 13 30 30 H 1.08009 * 120.03911 * 179.97438 * 16 15 14 31 31 H 1.09000 * 109.57177 * 175.13355 * 17 10 9 32 32 H 1.09000 * 109.50451 * 57.62237 * 18 17 10 33 33 H 1.08993 * 109.50589 * 297.49744 * 18 17 10 34 34 H 1.08998 * 109.46282 * 180.80436 * 19 18 17 35 35 H 1.09004 * 109.46280 * 60.83934 * 19 18 17 36 36 H 1.00906 * 110.99845 * 185.83907 * 20 19 18 37 37 H 1.08994 * 109.46377 * 58.27580 * 21 20 19 38 38 H 1.09001 * 109.45794 * 178.24791 * 21 20 19 39 39 H 1.09001 * 109.50534 * 299.24032 * 22 21 20 40 40 H 1.09003 * 109.50016 * 179.12119 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8902 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2032 -3.6126 -0.0027 11 6 2.6569 -4.1424 -1.2128 12 6 2.2967 -3.5438 -2.4134 13 6 2.7512 -4.0674 -3.6079 14 6 3.5552 -5.1924 -3.6101 15 6 3.9113 -5.7939 -2.4169 16 6 3.4652 -5.2721 -1.2186 17 6 2.6792 -4.1705 1.2656 18 6 3.4901 -3.1117 2.0179 19 6 3.9330 -3.6798 3.3682 20 7 2.7511 -4.0641 4.1504 21 6 1.9823 -5.1139 3.4697 22 6 1.4811 -4.5886 2.1224 23 1 -0.4851 0.8400 0.0004 24 1 0.6248 -2.5563 -0.8919 25 1 0.6241 -2.5575 0.8880 26 1 1.6655 -2.6675 -2.4126 27 1 2.4748 -3.6000 -4.5415 28 1 3.9055 -5.6025 -4.5458 29 1 4.5391 -6.6727 -2.4222 30 1 3.7433 -5.7426 -0.2871 31 1 3.3076 -5.0392 1.0694 32 1 2.8731 -2.2278 2.1797 33 1 4.3680 -2.8411 1.4314 34 1 4.4985 -2.9235 3.9125 35 1 4.5612 -4.5555 3.2053 36 1 3.0119 -4.3530 5.0813 37 1 2.6196 -5.9828 3.3064 38 1 1.1309 -5.3990 4.0877 39 1 0.8325 -3.7279 2.2858 40 1 0.9237 -5.3731 1.6106 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093221016.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:57 Heat of formation + Delta-G solvation = 31.600018 kcal Electronic energy + Delta-G solvation = -20055.691349 eV Core-core repulsion = 17255.844141 eV Total energy + Delta-G solvation = -2799.847208 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.31108 -37.86086 -35.22493 -32.69607 -30.95234 -30.48130 -30.18570 -28.63136 -26.44122 -23.61999 -22.80745 -22.40702 -21.36544 -20.12596 -18.80548 -16.96591 -16.53921 -16.29285 -15.02564 -14.93029 -14.33663 -14.18194 -13.92978 -13.61680 -13.51972 -12.93553 -12.80875 -12.50576 -12.44449 -12.05730 -11.86370 -11.31090 -11.25544 -10.93080 -10.85500 -10.63538 -10.59729 -10.44130 -10.24867 -9.95460 -9.72859 -9.48056 -8.85312 -8.45588 -8.27297 -8.26147 -6.45207 -5.98113 -4.10841 2.11083 2.33554 3.27878 3.36230 3.40474 4.05538 4.39392 4.43261 4.59718 5.16856 5.25749 5.27758 5.29293 5.50347 5.53891 5.58861 5.67694 5.70382 5.80453 5.95419 5.96351 6.06023 6.12573 6.33215 6.36629 6.42919 6.49135 6.64512 6.71257 6.98294 7.09556 7.13833 7.21009 7.23240 7.31034 7.41272 7.53968 7.64838 7.86284 8.21287 8.32790 8.54762 8.97476 9.54829 11.00436 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.011502 B = 0.010009 C = 0.006110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.775610 B = 2796.795086 C = 4581.321460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.061 3.939 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.249 3.751 10 N -0.606 5.606 11 C 0.240 3.760 12 C -0.186 4.186 13 C -0.077 4.077 14 C -0.206 4.206 15 C -0.079 4.079 16 C -0.224 4.224 17 C 0.157 3.843 18 C -0.127 4.127 19 C 0.062 3.938 20 N -0.688 5.688 21 C 0.065 3.935 22 C -0.130 4.130 23 H 0.262 0.738 24 H 0.031 0.969 25 H 0.035 0.965 26 H 0.133 0.867 27 H 0.110 0.890 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.021 0.979 36 H 0.336 0.664 37 H 0.024 0.976 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.681 -10.351 2.781 12.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.079 0.921 9 C 0.130 3.870 10 N -0.310 5.310 11 C 0.134 3.866 12 C -0.209 4.209 13 C -0.096 4.096 14 C -0.227 4.227 15 C -0.097 4.097 16 C -0.247 4.247 17 C 0.052 3.948 18 C -0.166 4.166 19 C -0.068 4.068 20 N -0.319 5.319 21 C -0.065 4.065 22 C -0.169 4.169 23 H 0.072 0.928 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.151 0.849 27 H 0.128 0.872 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.129 0.871 31 H 0.088 0.912 32 H 0.116 0.884 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.040 0.960 36 H 0.153 0.847 37 H 0.042 0.958 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.037 -9.610 2.726 11.187 hybrid contribution 1.056 0.283 0.149 1.104 sum 6.093 -9.327 2.875 11.506 Atomic orbital electron populations 1.69934 1.05938 1.26845 1.50647 1.24938 0.94790 0.99089 0.95236 0.86538 0.80180 0.83766 0.77562 1.19781 1.21041 1.21020 1.21600 0.93576 0.90511 1.50450 0.92146 1.19258 0.87326 0.82493 0.97960 1.47205 1.47149 1.35913 1.00775 1.17943 0.91132 0.90704 0.86858 1.20942 1.06126 1.02995 0.90826 1.20832 0.96327 0.95324 0.97108 1.20646 1.05244 0.99678 0.97106 1.20657 0.98325 0.98428 0.92333 1.20589 1.06727 0.99565 0.97849 1.20836 0.94449 0.95337 0.84162 1.22052 1.00599 1.00645 0.93315 1.21946 0.90824 0.98511 0.95478 1.60232 1.24037 1.42471 1.05120 1.21856 0.97125 0.91691 0.95785 1.22006 0.98862 1.01961 0.94042 0.92830 0.95066 0.94687 0.84927 0.87160 0.87724 0.87538 0.87090 0.91155 0.88413 0.91956 0.91033 0.96043 0.84669 0.95809 0.91007 0.89711 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -13.84 7.73 -34.44 -0.27 -14.10 16 8 H 0.06 1.64 7.59 -52.49 -0.40 1.24 16 9 C 0.25 6.10 4.35 -5.19 -0.02 6.07 16 10 N -0.61 -12.64 2.53 -165.41 -0.42 -13.06 16 11 C 0.24 4.88 6.54 -83.79 -0.55 4.33 16 12 C -0.19 -3.83 9.16 -39.38 -0.36 -4.19 16 13 C -0.08 -1.36 10.04 -39.61 -0.40 -1.76 16 14 C -0.21 -3.34 10.04 -39.55 -0.40 -3.74 16 15 C -0.08 -1.27 10.04 -39.62 -0.40 -1.66 16 16 C -0.22 -3.99 9.31 -39.38 -0.37 -4.35 16 17 C 0.16 2.80 2.53 -67.81 -0.17 2.63 16 18 C -0.13 -2.28 4.86 -26.65 -0.13 -2.41 16 19 C 0.06 0.89 6.55 -3.83 -0.03 0.86 16 20 N -0.69 -9.48 6.85 -113.82 -0.78 -10.26 16 21 C 0.07 0.88 6.55 -3.83 -0.03 0.85 16 22 C -0.13 -2.14 5.31 -26.65 -0.14 -2.29 16 23 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 24 H 0.03 0.83 6.44 -51.93 -0.33 0.49 16 25 H 0.04 0.91 6.14 -51.93 -0.32 0.59 16 26 H 0.13 3.00 6.26 -52.49 -0.33 2.67 16 27 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 28 H 0.10 1.43 8.06 -52.49 -0.42 1.01 16 29 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 30 H 0.11 1.80 5.74 -52.48 -0.30 1.50 16 31 H 0.07 1.17 5.32 -51.93 -0.28 0.89 16 32 H 0.10 2.10 6.77 -51.93 -0.35 1.75 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.34 3.71 8.90 -39.29 -0.35 3.36 16 37 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 1.64 6.42 -51.93 -0.33 1.30 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 312.91 15.07 4.72 4.72 Total: -1.00 -28.17 312.91 -10.05 -38.22 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -5.93 Total: 7.03 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -3.35 Total: -18.19 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -0.46 Total: -48.06 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.17 -10.05 -38.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093221016.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.819 kcal (2) G-P(sol) polarization free energy of solvation -28.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds