Wall clock time and date at job start Mon Mar 30 2020 06:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99856 * 2 1 4 4 H 1.48499 * 109.47512 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47228 * 300.00415 * 3 2 1 6 6 H 1.48500 * 109.46716 * 60.00109 * 3 2 1 7 7 C 1.37877 * 120.00264 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00033 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99907 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46921 * 179.97438 * 9 7 2 11 11 C 1.39675 * 120.00090 * 269.99507 * 10 9 7 12 12 C 1.38910 * 120.07425 * 5.47279 * 11 10 9 13 13 C 1.38106 * 119.92292 * 179.76464 * 12 11 10 14 14 C 1.38281 * 120.07694 * 0.51260 * 13 12 11 15 15 C 1.38283 * 120.14615 * 359.74345 * 14 13 12 16 16 C 1.38100 * 120.07737 * 359.97438 * 15 14 13 17 17 C 1.46506 * 119.99980 * 89.99994 * 10 9 7 18 18 C 1.53116 * 109.51843 * 295.29335 * 17 10 9 19 19 C 1.53039 * 109.27457 * 177.55716 * 18 17 10 20 20 N 1.46846 * 109.52663 * 300.82464 * 19 18 17 21 21 C 1.46846 * 111.19758 * 61.74241 * 20 19 18 22 22 C 1.53040 * 109.52053 * 298.25590 * 21 20 19 23 23 H 0.97003 * 120.00474 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47241 * 59.99875 * 9 7 2 25 25 H 1.08997 * 109.46979 * 299.99827 * 9 7 2 26 26 H 1.08002 * 120.03890 * 0.02562 * 12 11 10 27 27 H 1.08003 * 119.96012 * 180.25276 * 13 12 11 28 28 H 1.07999 * 119.92748 * 179.71809 * 14 13 12 29 29 H 1.08004 * 119.96057 * 179.97438 * 15 14 13 30 30 H 1.08009 * 120.03911 * 179.97438 * 16 15 14 31 31 H 1.09000 * 109.57177 * 175.13355 * 17 10 9 32 32 H 1.09000 * 109.50451 * 57.62237 * 18 17 10 33 33 H 1.08993 * 109.50589 * 297.49744 * 18 17 10 34 34 H 1.08998 * 109.46282 * 180.80436 * 19 18 17 35 35 H 1.09004 * 109.46280 * 60.83934 * 19 18 17 36 36 H 1.00906 * 110.99845 * 185.83907 * 20 19 18 37 37 H 1.08994 * 109.46377 * 58.27580 * 21 20 19 38 38 H 1.09001 * 109.45794 * 178.24791 * 21 20 19 39 39 H 1.09001 * 109.50534 * 299.24032 * 22 21 20 40 40 H 1.09003 * 109.50016 * 179.12119 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8902 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2032 -3.6126 -0.0027 11 6 2.6569 -4.1424 -1.2128 12 6 2.2967 -3.5438 -2.4134 13 6 2.7512 -4.0674 -3.6079 14 6 3.5552 -5.1924 -3.6101 15 6 3.9113 -5.7939 -2.4169 16 6 3.4652 -5.2721 -1.2186 17 6 2.6792 -4.1705 1.2656 18 6 3.4901 -3.1117 2.0179 19 6 3.9330 -3.6798 3.3682 20 7 2.7511 -4.0641 4.1504 21 6 1.9823 -5.1139 3.4697 22 6 1.4811 -4.5886 2.1224 23 1 -0.4851 0.8400 0.0004 24 1 0.6248 -2.5563 -0.8919 25 1 0.6241 -2.5575 0.8880 26 1 1.6655 -2.6675 -2.4126 27 1 2.4748 -3.6000 -4.5415 28 1 3.9055 -5.6025 -4.5458 29 1 4.5391 -6.6727 -2.4222 30 1 3.7433 -5.7426 -0.2871 31 1 3.3076 -5.0392 1.0694 32 1 2.8731 -2.2278 2.1797 33 1 4.3680 -2.8411 1.4314 34 1 4.4985 -2.9235 3.9125 35 1 4.5612 -4.5555 3.2053 36 1 3.0119 -4.3530 5.0813 37 1 2.6196 -5.9828 3.3064 38 1 1.1309 -5.3990 4.0877 39 1 0.8325 -3.7279 2.2858 40 1 0.9237 -5.3731 1.6106 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093221016.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:57 Heat of formation + Delta-G solvation = 14.847165 kcal Electronic energy + Delta-G solvation = -20056.417807 eV Core-core repulsion = 17255.844141 eV Total energy + Delta-G solvation = -2800.573666 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.75348 -39.16268 -36.71220 -34.71161 -32.34058 -31.72942 -31.60975 -30.33327 -28.15944 -25.33338 -24.18539 -23.78303 -22.79945 -21.53266 -20.24987 -18.54226 -18.39931 -17.64044 -16.76950 -16.37126 -15.91075 -15.50828 -15.25485 -15.08884 -14.83167 -14.37356 -14.35119 -14.18693 -13.84994 -13.58384 -13.14662 -13.13642 -12.96801 -12.60896 -12.56381 -12.08691 -12.03838 -12.00999 -11.96186 -11.44632 -11.32915 -11.14725 -10.59351 -10.44227 -9.67308 -9.31778 -8.32941 -7.80026 -6.29423 0.69797 0.92342 1.34630 1.36378 1.47806 2.34641 2.56843 3.10875 3.17354 3.33500 3.82945 4.00968 4.03246 4.25179 4.27163 4.31595 4.38826 4.48425 4.59084 4.64487 4.72020 4.77354 4.89385 4.90721 4.93550 5.01957 5.14390 5.17591 5.19106 5.35089 5.40014 5.56134 5.64090 5.73705 5.77818 5.89376 6.11137 6.13904 6.24894 6.54733 6.63746 6.88888 6.99881 7.40282 8.88111 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.011502 B = 0.010009 C = 0.006110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.775610 B = 2796.795086 C = 4581.321460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.520 4.520 8 H 0.049 0.951 9 C 0.273 3.727 10 N -0.617 5.617 11 C 0.212 3.788 12 C -0.220 4.220 13 C -0.081 4.081 14 C -0.197 4.197 15 C -0.072 4.072 16 C -0.223 4.223 17 C 0.155 3.845 18 C -0.122 4.122 19 C 0.071 3.929 20 N -0.703 5.703 21 C 0.072 3.928 22 C -0.126 4.126 23 H 0.264 0.736 24 H 0.001 0.999 25 H 0.012 0.988 26 H 0.094 0.906 27 H 0.127 0.873 28 H 0.141 0.859 29 H 0.148 0.852 30 H 0.130 0.870 31 H 0.093 0.907 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.080 0.920 35 H 0.046 0.954 36 H 0.356 0.644 37 H 0.048 0.952 38 H 0.088 0.912 39 H 0.044 0.956 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.088 -12.573 2.904 15.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.188 4.188 3 Si 0.779 3.221 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.067 0.933 9 C 0.152 3.848 10 N -0.323 5.323 11 C 0.107 3.893 12 C -0.243 4.243 13 C -0.100 4.100 14 C -0.218 4.218 15 C -0.090 4.090 16 C -0.245 4.245 17 C 0.052 3.948 18 C -0.161 4.161 19 C -0.059 4.059 20 N -0.337 5.337 21 C -0.057 4.057 22 C -0.165 4.165 23 H 0.073 0.927 24 H 0.019 0.981 25 H 0.030 0.970 26 H 0.112 0.888 27 H 0.145 0.855 28 H 0.158 0.842 29 H 0.166 0.834 30 H 0.147 0.853 31 H 0.111 0.889 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.064 0.936 36 H 0.176 0.824 37 H 0.066 0.934 38 H 0.106 0.894 39 H 0.063 0.937 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.467 -11.862 2.854 14.304 hybrid contribution 0.328 0.889 0.011 0.948 sum 7.796 -10.972 2.865 13.761 Atomic orbital electron populations 1.70043 1.07284 1.27659 1.51859 1.25708 0.95582 1.02381 0.95107 0.85567 0.78915 0.79837 0.77741 1.19493 1.20529 1.20343 1.21727 0.92961 0.91680 1.49520 0.93285 1.18649 0.87449 0.83535 0.95203 1.47059 1.47247 1.35546 1.02417 1.18252 0.92605 0.92162 0.86273 1.20850 1.07628 1.03040 0.92778 1.21082 0.96253 0.96024 0.96598 1.21083 1.03462 0.98300 0.98911 1.21148 0.97492 0.99052 0.91313 1.20839 1.05667 0.98345 0.99660 1.21046 0.95121 0.95688 0.82984 1.21925 0.99198 0.99282 0.95726 1.21824 0.91209 0.99544 0.93303 1.60116 1.24098 1.43262 1.06222 1.21810 0.98087 0.91941 0.93894 1.21939 0.97882 1.00518 0.96125 0.92706 0.98100 0.97014 0.88767 0.85484 0.84163 0.83437 0.85264 0.88927 0.92970 0.93173 0.90144 0.93585 0.82375 0.93369 0.89416 0.93681 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.51 13.29 21.45 0.28 -55.22 16 2 C 0.01 0.61 5.46 84.66 0.46 1.08 16 3 Si 0.95 45.20 29.54 68.60 2.03 47.22 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 7 C -0.52 -29.24 7.73 25.60 0.20 -29.04 16 8 H 0.05 2.81 7.59 -2.91 -0.02 2.79 16 9 C 0.27 14.45 4.35 85.63 0.37 14.82 16 10 N -0.62 -26.94 2.53 -677.23 -1.71 -28.65 16 11 C 0.21 8.76 6.54 38.21 0.25 9.01 16 12 C -0.22 -9.44 9.16 22.40 0.21 -9.24 16 13 C -0.08 -2.80 10.04 22.25 0.22 -2.58 16 14 C -0.20 -5.72 10.04 22.29 0.22 -5.49 16 15 C -0.07 -2.02 10.04 22.25 0.22 -1.79 16 16 C -0.22 -7.42 9.31 22.40 0.21 -7.21 16 17 C 0.16 5.56 2.53 45.07 0.11 5.68 16 18 C -0.12 -4.46 4.86 30.65 0.15 -4.31 16 19 C 0.07 1.90 6.55 86.33 0.57 2.47 16 20 N -0.70 -18.10 6.85 -514.01 -3.52 -21.62 16 21 C 0.07 1.79 6.55 86.33 0.57 2.35 16 22 C -0.13 -4.19 5.31 30.65 0.16 -4.03 16 23 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 24 H 0.00 0.06 6.44 -2.39 -0.02 0.05 16 25 H 0.01 0.68 6.14 -2.39 -0.01 0.66 16 26 H 0.09 4.68 6.26 -2.91 -0.02 4.66 16 27 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 28 H 0.14 3.11 8.06 -2.91 -0.02 3.08 16 29 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 30 H 0.13 3.76 5.74 -2.91 -0.02 3.74 16 31 H 0.09 2.89 5.32 -2.39 -0.01 2.88 16 32 H 0.05 2.37 6.77 -2.39 -0.02 2.35 16 33 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 36 H 0.36 6.85 8.90 -89.69 -0.80 6.05 16 37 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16 38 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.04 1.85 6.42 -2.39 -0.02 1.84 16 40 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -65.17 312.91 1.24 -63.93 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: 0.23 Total: 22.64 kcal Atomic # 6 Polarization: -32.22 SS G_CDS: 3.92 Total: -28.30 kcal Atomic # 7 Polarization: -100.55 SS G_CDS: -4.95 Total: -105.50 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -65.17 1.24 -63.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093221016.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.780 kcal (2) G-P(sol) polarization free energy of solvation -65.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds