Wall clock time and date at job start Mon Mar 30 2020 06:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00071 * 2 1 4 4 H 1.48498 * 109.46843 * 269.99594 * 3 2 1 5 5 H 1.48493 * 109.47024 * 29.99497 * 3 2 1 6 6 H 1.48505 * 109.47115 * 149.99750 * 3 2 1 7 7 C 1.37883 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99909 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99863 * 179.72863 * 7 2 1 10 10 N 1.46500 * 109.47099 * 180.27535 * 9 7 2 11 11 C 1.39684 * 119.99919 * 89.99721 * 10 9 7 12 12 C 1.38908 * 120.07392 * 174.06839 * 11 10 9 13 13 C 1.38097 * 119.92498 * 179.76962 * 12 11 10 14 14 C 1.38286 * 120.07362 * 0.50897 * 13 12 11 15 15 C 1.38285 * 120.15203 * 359.74627 * 14 13 12 16 16 C 1.38102 * 120.07000 * 359.97438 * 15 14 13 17 17 C 1.46499 * 120.00255 * 270.00028 * 10 9 7 18 18 H 1.09001 * 110.43295 * 2.64930 * 17 10 9 19 19 C 1.54260 * 110.48647 * 240.10725 * 17 10 9 20 20 C 1.53872 * 106.60025 * 217.70757 * 19 17 10 21 21 C 1.54263 * 106.59946 * 0.02562 * 20 19 17 22 22 H 1.09001 * 110.48697 * 264.93005 * 21 20 19 23 23 N 1.46898 * 110.49105 * 142.28577 * 21 20 19 24 24 C 1.54888 * 104.19595 * 23.60559 * 21 20 19 25 25 H 0.96995 * 119.99634 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47040 * 300.27009 * 9 7 2 27 27 H 1.08999 * 109.47474 * 60.27683 * 9 7 2 28 28 H 1.08001 * 120.03814 * 0.02562 * 12 11 10 29 29 H 1.08000 * 119.96433 * 180.25401 * 13 12 11 30 30 H 1.08004 * 119.92839 * 179.72181 * 14 13 12 31 31 H 1.07997 * 119.96584 * 180.02562 * 15 14 13 32 32 H 1.08001 * 120.03763 * 180.02562 * 16 15 14 33 33 H 1.09000 * 110.03387 * 336.99610 * 19 17 10 34 34 H 1.09003 * 110.03233 * 98.42365 * 19 17 10 35 35 H 1.09005 * 110.02936 * 119.28731 * 20 19 17 36 36 H 1.09004 * 110.03583 * 240.66794 * 20 19 17 37 37 H 1.00902 * 110.99775 * 61.44922 * 23 21 20 38 38 H 1.00900 * 111.00377 * 185.40498 * 23 21 20 39 39 H 1.08998 * 110.75740 * 203.74783 * 24 21 20 40 40 H 1.08995 * 110.75749 * 80.37422 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 -0.0056 10 7 3.9998 -2.5753 -0.0104 11 6 4.2276 -3.2314 -1.2224 12 6 4.8059 -4.4943 -1.2323 13 6 5.0253 -5.1422 -2.4320 14 6 4.6797 -4.5306 -3.6231 15 6 4.1087 -3.2711 -3.6172 16 6 3.8813 -2.6201 -2.4207 17 6 4.2492 -3.2685 1.2559 18 1 3.9770 -2.6322 2.0980 19 6 5.7287 -3.6936 1.3564 20 6 5.7446 -5.0714 2.0414 21 6 4.2742 -5.4358 2.3326 22 1 4.0050 -5.1514 3.3499 23 7 4.0489 -6.8720 2.1223 24 6 3.4662 -4.6042 1.3056 25 1 -0.4849 0.8400 -0.0004 26 1 3.8712 -0.6786 -0.8961 27 1 3.8786 -0.6821 0.8838 28 1 5.0798 -4.9709 -0.3026 29 1 5.4711 -6.1258 -2.4402 30 1 4.8565 -5.0375 -4.5603 31 1 3.8396 -2.7964 -4.5492 32 1 3.4349 -1.6366 -2.4166 33 1 6.1647 -3.7669 0.3601 34 1 6.2845 -2.9724 1.9555 35 1 6.1883 -5.8133 1.3774 36 1 6.3089 -5.0190 2.9725 37 1 4.6187 -7.4227 2.7470 38 1 3.0723 -7.1038 2.2249 39 1 2.4471 -4.4415 1.6565 40 1 3.4670 -5.0894 0.3296 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093221019.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:17 Heat of formation + Delta-G solvation = 37.884469 kcal Electronic energy + Delta-G solvation = -20093.967612 eV Core-core repulsion = 17294.392919 eV Total energy + Delta-G solvation = -2799.574694 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.78440 -37.53892 -35.20132 -32.83382 -31.89826 -30.16969 -29.30213 -28.43144 -27.05833 -25.19282 -22.57193 -21.59923 -20.98484 -19.89127 -19.26881 -16.89234 -16.63560 -16.12962 -15.16264 -15.10461 -14.99904 -14.35639 -14.15233 -13.46977 -13.42026 -13.07304 -12.79311 -12.56385 -12.45120 -11.88549 -11.71353 -11.43111 -11.28051 -10.98869 -10.85459 -10.76276 -10.64958 -10.57261 -10.19248 -10.06513 -9.83019 -9.54277 -8.88499 -8.68289 -8.64570 -8.19491 -6.39390 -6.13797 -4.13295 2.12678 2.32424 3.21641 3.29358 3.30433 3.95807 4.32717 4.50679 4.58186 4.80466 5.02692 5.16609 5.18150 5.53282 5.58131 5.59276 5.64312 5.74949 5.79042 5.87136 5.93433 6.06407 6.16992 6.23019 6.31592 6.36869 6.42745 6.51689 6.59340 6.67133 6.77888 6.81768 7.14006 7.17115 7.21885 7.30633 7.44362 7.54545 7.61461 8.12049 8.40141 8.54566 8.95042 9.46591 10.99232 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.016292 B = 0.007826 C = 0.006085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.268445 B = 3577.003147 C = 4600.372753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.871 3.129 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.532 4.532 8 H 0.077 0.923 9 C 0.221 3.779 10 N -0.600 5.600 11 C 0.235 3.765 12 C -0.220 4.220 13 C -0.083 4.083 14 C -0.200 4.200 15 C -0.081 4.081 16 C -0.187 4.187 17 C 0.161 3.839 18 H 0.090 0.910 19 C -0.150 4.150 20 C -0.116 4.116 21 C 0.083 3.917 22 H 0.039 0.961 23 N -0.842 5.842 24 C -0.141 4.141 25 H 0.264 0.736 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.137 0.863 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.128 0.872 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.336 0.664 38 H 0.341 0.659 39 H 0.067 0.933 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.960 -9.485 2.187 14.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.698 3.302 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.570 4.570 8 H 0.095 0.905 9 C 0.100 3.900 10 N -0.305 5.305 11 C 0.130 3.870 12 C -0.243 4.243 13 C -0.102 4.102 14 C -0.220 4.220 15 C -0.100 4.100 16 C -0.209 4.209 17 C 0.055 3.945 18 H 0.108 0.892 19 C -0.189 4.189 20 C -0.154 4.154 21 C -0.029 4.029 22 H 0.057 0.943 23 N -0.372 5.372 24 C -0.180 4.180 25 H 0.074 0.926 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.154 0.846 29 H 0.126 0.874 30 H 0.123 0.877 31 H 0.128 0.872 32 H 0.146 0.854 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.148 0.852 38 H 0.154 0.846 39 H 0.085 0.915 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 11.028 -9.073 1.652 14.376 hybrid contribution -0.215 0.991 1.035 1.449 sum 10.812 -8.082 2.687 13.764 Atomic orbital electron populations 1.69903 1.06196 1.26938 1.50321 1.24901 0.94716 0.98817 0.94605 0.86934 0.80340 0.84119 0.78842 1.19950 1.21032 1.19052 1.21502 0.89498 0.94792 1.51234 0.90474 1.19658 0.95349 0.78188 0.96806 1.46764 1.68653 1.13943 1.01169 1.17833 0.91609 0.91202 0.86310 1.21169 1.08169 0.95939 0.99013 1.20737 0.98639 0.98421 0.92356 1.20692 1.07149 0.96926 0.97271 1.20805 0.97421 0.94715 0.97013 1.20893 1.06530 1.02411 0.91062 1.21553 0.92703 0.93023 0.87206 0.89200 1.22815 0.98120 0.96045 1.01898 1.22136 0.95731 0.97266 1.00257 1.22154 0.95886 0.87834 0.96997 0.94287 1.58773 1.12212 1.04951 1.61215 1.23178 0.98660 0.95372 1.00786 0.92571 0.95586 0.95582 0.84575 0.87381 0.87713 0.87178 0.85380 0.89871 0.92001 0.90749 0.92375 0.85250 0.84618 0.91472 0.88459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.89 13.96 55.43 0.77 -26.12 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 3 Si 0.87 20.69 27.46 -169.99 -4.67 16.02 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.01 6.55 56.52 0.37 -5.64 16 7 C -0.53 -14.58 9.88 -34.44 -0.34 -14.92 16 8 H 0.08 2.38 8.06 -52.48 -0.42 1.95 16 9 C 0.22 5.15 3.84 -5.20 -0.02 5.13 16 10 N -0.60 -12.30 2.61 -163.65 -0.43 -12.72 16 11 C 0.24 4.71 5.94 -83.78 -0.50 4.21 16 12 C -0.22 -3.87 6.28 -39.39 -0.25 -4.12 16 13 C -0.08 -1.34 10.04 -39.62 -0.40 -1.74 16 14 C -0.20 -3.26 10.04 -39.55 -0.40 -3.65 16 15 C -0.08 -1.43 10.04 -39.61 -0.40 -1.83 16 16 C -0.19 -3.81 9.16 -39.38 -0.36 -4.17 16 17 C 0.16 2.79 3.34 -66.26 -0.22 2.57 16 18 H 0.09 1.60 7.88 -51.93 -0.41 1.19 16 19 C -0.15 -2.14 5.66 -25.62 -0.14 -2.29 16 20 C -0.12 -1.40 5.88 -25.62 -0.15 -1.55 16 21 C 0.08 1.05 3.99 -66.06 -0.26 0.79 16 22 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 23 N -0.84 -9.33 9.26 -3.26 -0.03 -9.36 16 24 C -0.14 -2.30 5.55 -24.73 -0.14 -2.44 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.03 0.61 5.88 -51.93 -0.31 0.31 16 27 H 0.03 0.60 7.03 -51.93 -0.37 0.24 16 28 H 0.14 2.22 3.17 -52.49 -0.17 2.05 16 29 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.10 1.44 8.06 -52.48 -0.42 1.02 16 31 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 32 H 0.13 2.82 6.26 -52.49 -0.33 2.49 16 33 H 0.08 1.28 5.51 -51.93 -0.29 0.99 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.91 7.75 -51.93 -0.40 0.50 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.34 2.99 9.07 -39.29 -0.36 2.63 16 38 H 0.34 3.54 9.06 -39.29 -0.36 3.19 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.10 1.73 5.06 -51.93 -0.26 1.47 16 LS Contribution 308.92 15.07 4.66 4.66 Total: -1.00 -29.58 308.92 -9.16 -38.73 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -5.79 Total: 10.87 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: -3.67 Total: -22.08 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: 0.32 Total: -48.20 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.67 Total: 16.02 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.58 -9.16 -38.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093221019.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.619 kcal (2) G-P(sol) polarization free energy of solvation -29.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds