Wall clock time and date at job start Mon Mar 30 2020 06:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00071 * 2 1 4 4 H 1.48498 * 109.46843 * 269.99594 * 3 2 1 5 5 H 1.48493 * 109.47024 * 29.99497 * 3 2 1 6 6 H 1.48505 * 109.47115 * 149.99750 * 3 2 1 7 7 C 1.37883 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99909 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99863 * 179.72863 * 7 2 1 10 10 N 1.46500 * 109.47099 * 180.27535 * 9 7 2 11 11 C 1.39684 * 119.99919 * 89.99721 * 10 9 7 12 12 C 1.38908 * 120.07392 * 174.06839 * 11 10 9 13 13 C 1.38097 * 119.92498 * 179.76962 * 12 11 10 14 14 C 1.38286 * 120.07362 * 0.50897 * 13 12 11 15 15 C 1.38285 * 120.15203 * 359.74627 * 14 13 12 16 16 C 1.38102 * 120.07000 * 359.97438 * 15 14 13 17 17 C 1.46499 * 120.00255 * 270.00028 * 10 9 7 18 18 H 1.09001 * 110.43295 * 2.64930 * 17 10 9 19 19 C 1.54260 * 110.48647 * 240.10725 * 17 10 9 20 20 C 1.53872 * 106.60025 * 217.70757 * 19 17 10 21 21 C 1.54263 * 106.59946 * 0.02562 * 20 19 17 22 22 H 1.09001 * 110.48697 * 264.93005 * 21 20 19 23 23 N 1.46898 * 110.49105 * 142.28577 * 21 20 19 24 24 C 1.54888 * 104.19595 * 23.60559 * 21 20 19 25 25 H 0.96995 * 119.99634 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47040 * 300.27009 * 9 7 2 27 27 H 1.08999 * 109.47474 * 60.27683 * 9 7 2 28 28 H 1.08001 * 120.03814 * 0.02562 * 12 11 10 29 29 H 1.08000 * 119.96433 * 180.25401 * 13 12 11 30 30 H 1.08004 * 119.92839 * 179.72181 * 14 13 12 31 31 H 1.07997 * 119.96584 * 180.02562 * 15 14 13 32 32 H 1.08001 * 120.03763 * 180.02562 * 16 15 14 33 33 H 1.09000 * 110.03387 * 336.99610 * 19 17 10 34 34 H 1.09003 * 110.03233 * 98.42365 * 19 17 10 35 35 H 1.09005 * 110.02936 * 119.28731 * 20 19 17 36 36 H 1.09004 * 110.03583 * 240.66794 * 20 19 17 37 37 H 1.00902 * 110.99775 * 61.44922 * 23 21 20 38 38 H 1.00900 * 111.00377 * 185.40498 * 23 21 20 39 39 H 1.08998 * 110.75740 * 203.74783 * 24 21 20 40 40 H 1.08995 * 110.75749 * 80.37422 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 -0.0056 10 7 3.9998 -2.5753 -0.0104 11 6 4.2276 -3.2314 -1.2224 12 6 4.8059 -4.4943 -1.2323 13 6 5.0253 -5.1422 -2.4320 14 6 4.6797 -4.5306 -3.6231 15 6 4.1087 -3.2711 -3.6172 16 6 3.8813 -2.6201 -2.4207 17 6 4.2492 -3.2685 1.2559 18 1 3.9770 -2.6322 2.0980 19 6 5.7287 -3.6936 1.3564 20 6 5.7446 -5.0714 2.0414 21 6 4.2742 -5.4358 2.3326 22 1 4.0050 -5.1514 3.3499 23 7 4.0489 -6.8720 2.1223 24 6 3.4662 -4.6042 1.3056 25 1 -0.4849 0.8400 -0.0004 26 1 3.8712 -0.6786 -0.8961 27 1 3.8786 -0.6821 0.8838 28 1 5.0798 -4.9709 -0.3026 29 1 5.4711 -6.1258 -2.4402 30 1 4.8565 -5.0375 -4.5603 31 1 3.8396 -2.7964 -4.5492 32 1 3.4349 -1.6366 -2.4166 33 1 6.1647 -3.7669 0.3601 34 1 6.2845 -2.9724 1.9555 35 1 6.1883 -5.8133 1.3774 36 1 6.3089 -5.0190 2.9725 37 1 4.6187 -7.4227 2.7470 38 1 3.0723 -7.1038 2.2249 39 1 2.4471 -4.4415 1.6565 40 1 3.4670 -5.0894 0.3296 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093221019.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:16 Heat of formation + Delta-G solvation = 19.084232 kcal Electronic energy + Delta-G solvation = -20094.782852 eV Core-core repulsion = 17294.392919 eV Total energy + Delta-G solvation = -2800.389933 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.14731 -38.79662 -36.69269 -34.72075 -33.23199 -31.56055 -30.88886 -29.79925 -28.53218 -26.52908 -24.33133 -23.02219 -22.43026 -21.07287 -20.58991 -19.02491 -18.04570 -17.39617 -16.71868 -16.34872 -16.07928 -15.98207 -15.49610 -14.96597 -14.70895 -14.60203 -14.34663 -14.27324 -13.88690 -13.52328 -13.15330 -12.94250 -12.62326 -12.49681 -12.32677 -12.17757 -11.98166 -11.90482 -11.80518 -11.65248 -11.42626 -11.14582 -10.82887 -10.41159 -9.64003 -9.54640 -8.33671 -7.91664 -6.38194 0.71617 0.92147 1.32651 1.33166 1.43723 2.29367 2.46346 3.00133 3.18020 3.51489 3.65921 3.89574 4.04838 4.20665 4.28298 4.39049 4.46671 4.53334 4.54949 4.59924 4.70981 4.79443 4.84181 4.90835 4.94488 4.98646 5.09050 5.13028 5.24732 5.29889 5.32816 5.39920 5.46541 5.67290 5.78948 5.90286 6.12095 6.26135 6.30009 6.62586 6.67278 6.74469 6.91831 7.27395 8.83829 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.016292 B = 0.007826 C = 0.006085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.268445 B = 3577.003147 C = 4600.372753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.012 3.988 3 Si 0.944 3.056 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.244 1.244 7 C -0.530 4.530 8 H 0.025 0.975 9 C 0.233 3.767 10 N -0.612 5.612 11 C 0.212 3.788 12 C -0.217 4.217 13 C -0.081 4.081 14 C -0.193 4.193 15 C -0.086 4.086 16 C -0.221 4.221 17 C 0.150 3.850 18 H 0.077 0.923 19 C -0.139 4.139 20 C -0.106 4.106 21 C 0.094 3.906 22 H 0.046 0.954 23 N -0.844 5.844 24 C -0.139 4.139 25 H 0.267 0.733 26 H 0.027 0.973 27 H 0.033 0.967 28 H 0.149 0.851 29 H 0.143 0.857 30 H 0.139 0.861 31 H 0.128 0.872 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.352 0.648 38 H 0.345 0.655 39 H 0.037 0.963 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.904 -10.684 2.245 17.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.186 4.186 3 Si 0.767 3.233 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.167 1.167 7 C -0.569 4.569 8 H 0.043 0.957 9 C 0.110 3.890 10 N -0.319 5.319 11 C 0.108 3.892 12 C -0.239 4.239 13 C -0.099 4.099 14 C -0.213 4.213 15 C -0.105 4.105 16 C -0.244 4.244 17 C 0.045 3.955 18 H 0.096 0.904 19 C -0.178 4.178 20 C -0.144 4.144 21 C -0.018 4.018 22 H 0.064 0.936 23 N -0.375 5.375 24 C -0.177 4.177 25 H 0.076 0.924 26 H 0.044 0.956 27 H 0.051 0.949 28 H 0.167 0.833 29 H 0.161 0.839 30 H 0.157 0.843 31 H 0.146 0.854 32 H 0.117 0.883 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.166 0.834 38 H 0.157 0.843 39 H 0.056 0.944 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 14.003 -10.321 1.713 17.480 hybrid contribution -1.209 1.220 0.943 1.960 sum 12.794 -9.101 2.657 15.924 Atomic orbital electron populations 1.70068 1.08292 1.28175 1.52134 1.25848 0.95541 1.03126 0.94051 0.85765 0.79618 0.78545 0.79379 1.19174 1.20575 1.16717 1.21654 0.91837 0.92820 1.50617 0.95707 1.19334 0.92303 0.80574 0.96808 1.46721 1.69327 1.13195 1.02609 1.18092 0.92841 0.92414 0.85849 1.21359 1.07348 0.94798 1.00407 1.21189 0.97536 0.99585 0.91615 1.21095 1.05314 0.96020 0.98877 1.21067 0.97219 0.95529 0.96685 1.20891 1.08623 1.02044 0.92818 1.21772 0.95290 0.92888 0.85518 0.90432 1.22708 0.95334 0.97768 1.02004 1.22094 0.95241 0.95678 1.01362 1.22000 0.95618 0.88327 0.95896 0.93582 1.58704 1.12905 1.04045 1.61883 1.23072 0.97733 0.95815 1.01119 0.92403 0.95556 0.94866 0.83335 0.83905 0.84345 0.85426 0.88345 0.90704 0.90775 0.90116 0.89769 0.83377 0.84259 0.94363 0.89938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.47 13.96 21.45 0.30 -59.17 16 2 C 0.01 0.71 5.47 84.66 0.46 1.17 16 3 Si 0.94 43.47 27.46 68.60 1.88 45.35 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.24 -10.27 6.55 99.48 0.65 -9.62 16 7 C -0.53 -30.76 9.88 25.60 0.25 -30.51 16 8 H 0.02 1.65 8.06 -2.91 -0.02 1.62 16 9 C 0.23 11.17 3.84 85.63 0.33 11.50 16 10 N -0.61 -25.87 2.61 -671.68 -1.75 -27.63 16 11 C 0.21 8.61 5.94 38.21 0.23 8.84 16 12 C -0.22 -7.36 6.28 22.40 0.14 -7.22 16 13 C -0.08 -2.38 10.04 22.25 0.22 -2.16 16 14 C -0.19 -5.75 10.04 22.29 0.22 -5.53 16 15 C -0.09 -3.00 10.04 22.25 0.22 -2.78 16 16 C -0.22 -9.31 9.16 22.40 0.21 -9.10 16 17 C 0.15 5.26 3.34 46.07 0.15 5.42 16 18 H 0.08 2.84 7.88 -2.39 -0.02 2.82 16 19 C -0.14 -3.73 5.66 31.32 0.18 -3.56 16 20 C -0.11 -2.22 5.88 31.32 0.18 -2.04 16 21 C 0.09 2.21 3.99 45.99 0.18 2.39 16 22 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 23 N -0.84 -16.78 9.26 -164.24 -1.52 -18.30 16 24 C -0.14 -4.59 5.55 31.89 0.18 -4.41 16 25 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 26 H 0.03 1.27 5.88 -2.39 -0.01 1.25 16 27 H 0.03 1.54 7.03 -2.39 -0.02 1.52 16 28 H 0.15 4.58 3.17 -2.91 -0.01 4.57 16 29 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 30 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 31 H 0.13 3.84 8.06 -2.91 -0.02 3.82 16 32 H 0.10 4.62 6.26 -2.91 -0.02 4.60 16 33 H 0.07 2.16 5.51 -2.39 -0.01 2.15 16 34 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.08 1.65 7.75 -2.38 -0.02 1.63 16 36 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.35 5.16 9.07 -89.69 -0.81 4.35 16 38 H 0.34 6.65 9.06 -89.69 -0.81 5.83 16 39 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.08 2.97 5.06 -2.39 -0.01 2.96 16 Total: -1.00 -67.94 308.92 1.45 -66.50 By element: Atomic # 1 Polarization: 31.85 SS G_CDS: -0.62 Total: 31.23 kcal Atomic # 6 Polarization: -41.14 SS G_CDS: 3.16 Total: -37.98 kcal Atomic # 7 Polarization: -102.12 SS G_CDS: -2.98 Total: -105.10 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.88 Total: 45.35 kcal Total: -67.94 1.45 -66.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093221019.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.580 kcal (2) G-P(sol) polarization free energy of solvation -67.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds