Wall clock time and date at job start Mon Mar 30 2020 06:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99796 * 2 1 4 4 H 1.48491 * 109.47174 * 269.99858 * 3 2 1 5 5 H 1.48502 * 109.47209 * 30.00238 * 3 2 1 6 6 H 1.48502 * 109.47126 * 149.99852 * 3 2 1 7 7 C 1.37874 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00057 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00006 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.46991 * 179.97438 * 9 7 2 11 11 C 1.39676 * 120.00363 * 90.00298 * 10 9 7 12 12 C 1.38910 * 120.07592 * 175.63384 * 11 10 9 13 13 C 1.38106 * 119.92162 * 179.97438 * 12 11 10 14 14 C 1.38284 * 120.07479 * 359.97438 * 13 12 11 15 15 C 1.38284 * 120.15263 * 359.97438 * 14 13 12 16 16 C 1.38107 * 120.07164 * 0.02562 * 15 14 13 17 17 C 1.46506 * 119.99918 * 270.00147 * 10 9 7 18 18 H 1.09001 * 110.67384 * 3.22695 * 17 10 9 19 19 C 1.54891 * 110.75541 * 126.46656 * 17 10 9 20 20 C 1.54269 * 104.19647 * 156.25666 * 19 17 10 21 21 C 1.53875 * 106.59731 * 336.38687 * 20 19 17 22 22 H 1.08995 * 110.03470 * 240.71394 * 21 20 19 23 23 N 1.46902 * 110.03230 * 119.28511 * 21 20 19 24 24 C 1.54264 * 106.59997 * 0.02562 * 21 20 19 25 25 H 0.97002 * 120.00142 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46776 * 60.00022 * 9 7 2 27 27 H 1.08997 * 109.47189 * 300.00173 * 9 7 2 28 28 H 1.07998 * 120.03924 * 359.97438 * 12 11 10 29 29 H 1.07997 * 119.96055 * 179.97438 * 13 12 11 30 30 H 1.08007 * 119.92432 * 179.72904 * 14 13 12 31 31 H 1.08002 * 119.96446 * 179.97438 * 15 14 13 32 32 H 1.08000 * 120.03646 * 179.97438 * 16 15 14 33 33 H 1.09000 * 110.48408 * 274.93059 * 19 17 10 34 34 H 1.08996 * 110.48872 * 37.44397 * 19 17 10 35 35 H 1.08995 * 110.03126 * 95.66795 * 20 19 17 36 36 H 1.09000 * 110.03117 * 217.05767 * 20 19 17 37 37 H 1.00903 * 111.00028 * 61.44953 * 23 21 20 38 38 H 1.00901 * 111.00129 * 185.40517 * 23 21 20 39 39 H 1.09000 * 110.48961 * 264.92987 * 24 21 20 40 40 H 1.09002 * 110.48837 * 142.28606 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2031 -3.6125 0.0015 11 6 2.6579 -4.1429 1.2109 12 6 3.4891 -5.2559 1.2143 13 6 3.9374 -5.7773 2.4120 14 6 3.5600 -5.1924 3.6069 15 6 2.7335 -4.0838 3.6071 16 6 2.2817 -3.5572 2.4130 17 6 2.6782 -4.1698 -1.2674 18 1 2.2732 -3.6089 -2.1097 19 6 4.2263 -4.1881 -1.3136 20 6 4.5613 -5.2946 -2.3350 21 6 3.3463 -6.2378 -2.3756 22 1 3.6434 -7.2427 -2.0757 23 7 2.7748 -6.2643 -3.7287 24 6 2.3150 -5.6713 -1.3780 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5574 -0.8880 27 1 0.6248 -2.5563 0.8919 28 1 3.7845 -5.7128 0.2814 29 1 4.5833 -6.6428 2.4153 30 1 3.9085 -5.6049 4.5423 31 1 2.4404 -3.6297 4.5422 32 1 1.6359 -2.6916 2.4139 33 1 4.6092 -3.2260 -1.6541 34 1 4.6343 -4.4347 -0.3334 35 1 4.7269 -4.8564 -3.3192 36 1 5.4487 -5.8412 -2.0157 37 1 3.4455 -6.6115 -4.3978 38 1 1.9256 -6.8088 -3.7520 39 1 2.4140 -6.1595 -0.4085 40 1 1.3033 -5.7919 -1.7653 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093221020.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:20 Heat of formation + Delta-G solvation = 37.291701 kcal Electronic energy + Delta-G solvation = -20012.234915 eV Core-core repulsion = 17212.634517 eV Total energy + Delta-G solvation = -2799.600398 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.71826 -37.56592 -35.10879 -32.84895 -31.74881 -30.14012 -29.09865 -28.26150 -26.78908 -25.23665 -22.80593 -21.60452 -21.08303 -19.69544 -19.36497 -16.63430 -16.36603 -16.19090 -15.20530 -14.99638 -14.97270 -14.33079 -14.15898 -13.37255 -13.32034 -13.05035 -12.93607 -12.46915 -12.07781 -11.80459 -11.37428 -11.25153 -11.11198 -11.03515 -10.87892 -10.83909 -10.69434 -10.63561 -10.29980 -9.85276 -9.70285 -9.63713 -8.82679 -8.62409 -8.47153 -8.19996 -6.44179 -5.98304 -4.13167 2.12066 2.34939 3.28520 3.35196 3.39667 4.08107 4.42693 4.54567 4.59619 4.86707 4.94380 5.25041 5.33925 5.53500 5.59466 5.60189 5.71259 5.78197 5.79105 5.92567 6.04265 6.10577 6.15626 6.25588 6.30932 6.37300 6.48047 6.61754 6.63288 6.75994 7.03062 7.12694 7.21751 7.24004 7.30757 7.39601 7.44330 7.65706 7.85277 8.20250 8.35201 8.55900 8.96383 9.53473 10.99286 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.014492 B = 0.007972 C = 0.005822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.623948 B = 3511.292546 C = 4808.442725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.250 3.750 10 N -0.603 5.603 11 C 0.240 3.760 12 C -0.232 4.232 13 C -0.084 4.084 14 C -0.205 4.205 15 C -0.079 4.079 16 C -0.187 4.187 17 C 0.167 3.833 18 H 0.096 0.904 19 C -0.150 4.150 20 C -0.116 4.116 21 C 0.088 3.912 22 H 0.033 0.967 23 N -0.842 5.842 24 C -0.148 4.148 25 H 0.263 0.737 26 H 0.030 0.970 27 H 0.034 0.966 28 H 0.132 0.868 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.132 0.868 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.336 0.664 38 H 0.339 0.661 39 H 0.086 0.914 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.452 -12.694 -1.553 14.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.141 4.141 3 Si 0.722 3.278 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.567 4.567 8 H 0.078 0.922 9 C 0.130 3.870 10 N -0.306 5.306 11 C 0.134 3.866 12 C -0.254 4.254 13 C -0.103 4.103 14 C -0.225 4.225 15 C -0.098 4.098 16 C -0.210 4.210 17 C 0.061 3.939 18 H 0.114 0.886 19 C -0.188 4.188 20 C -0.154 4.154 21 C -0.023 4.023 22 H 0.050 0.950 23 N -0.372 5.372 24 C -0.187 4.187 25 H 0.073 0.927 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.149 0.851 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.128 0.872 32 H 0.150 0.850 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.104 0.896 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.116 -11.656 -1.665 13.268 hybrid contribution 0.601 0.035 -0.010 0.602 sum 6.717 -11.621 -1.675 13.526 Atomic orbital electron populations 1.69931 1.05963 1.27028 1.50531 1.24952 0.94827 0.99173 0.95117 0.86552 0.79915 0.83217 0.78126 1.20661 1.21154 1.19843 1.21586 0.93616 0.90654 1.50820 0.92227 1.19283 0.87196 0.82542 0.97940 1.47195 1.46901 1.35572 1.00981 1.17880 0.91240 0.90788 0.86736 1.21098 1.05804 1.00008 0.98521 1.20707 0.98569 0.98529 0.92461 1.20649 1.04816 0.99973 0.97109 1.20816 0.96427 0.95442 0.97076 1.20955 1.06034 1.03076 0.90914 1.21672 0.92843 0.92203 0.87160 0.88624 1.23005 0.97342 0.98580 0.99911 1.22158 0.96245 0.96707 1.00331 1.21904 0.94898 0.96677 0.88847 0.94955 1.58836 1.09452 1.62504 1.06443 1.23157 0.98606 0.97859 0.99046 0.92722 0.95224 0.94780 0.85090 0.87604 0.87824 0.87236 0.85031 0.91416 0.89706 0.90962 0.92272 0.85168 0.84870 0.89554 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.80 13.29 55.43 0.74 -25.06 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.53 -14.40 9.37 -34.44 -0.32 -14.72 16 8 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 9 C 0.25 6.27 4.79 -5.20 -0.02 6.25 16 10 N -0.60 -12.73 2.64 -163.30 -0.43 -13.16 16 11 C 0.24 4.84 6.08 -83.79 -0.51 4.33 16 12 C -0.23 -4.01 6.26 -39.38 -0.25 -4.25 16 13 C -0.08 -1.33 10.04 -39.61 -0.40 -1.73 16 14 C -0.20 -3.31 10.04 -39.55 -0.40 -3.71 16 15 C -0.08 -1.39 10.04 -39.61 -0.40 -1.79 16 16 C -0.19 -3.86 9.17 -39.38 -0.36 -4.22 16 17 C 0.17 3.02 3.39 -65.94 -0.22 2.80 16 18 H 0.10 1.91 7.90 -51.93 -0.41 1.50 16 19 C -0.15 -2.43 5.75 -25.07 -0.14 -2.58 16 20 C -0.12 -1.50 6.51 -25.61 -0.17 -1.66 16 21 C 0.09 1.09 3.95 -66.59 -0.26 0.83 16 22 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 23 N -0.84 -9.38 9.12 -3.72 -0.03 -9.42 16 24 C -0.15 -2.22 5.47 -25.08 -0.14 -2.36 16 25 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.03 0.79 7.98 -51.93 -0.41 0.38 16 27 H 0.03 0.91 6.40 -51.93 -0.33 0.58 16 28 H 0.13 2.06 3.59 -52.49 -0.19 1.88 16 29 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 30 H 0.10 1.42 8.06 -52.48 -0.42 0.99 16 31 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.13 2.99 6.25 -52.49 -0.33 2.67 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.08 1.42 4.84 -51.93 -0.25 1.17 16 35 H 0.07 0.93 7.92 -51.93 -0.41 0.52 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.34 3.06 9.06 -39.29 -0.36 2.71 16 38 H 0.34 3.35 8.92 -39.29 -0.35 3.00 16 39 H 0.09 1.33 4.99 -51.93 -0.26 1.07 16 40 H 0.07 1.03 7.94 -51.93 -0.41 0.62 16 LS Contribution 312.70 15.07 4.71 4.71 Total: -1.00 -28.62 312.70 -9.52 -38.14 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -5.79 Total: 9.52 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -3.69 Total: -21.21 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.27 Total: -47.64 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.62 -9.52 -38.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093221020.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.430 kcal (2) G-P(sol) polarization free energy of solvation -28.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds