Wall clock time and date at job start Mon Mar 30 2020 06:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99796 * 2 1 4 4 H 1.48491 * 109.47174 * 269.99858 * 3 2 1 5 5 H 1.48502 * 109.47209 * 30.00238 * 3 2 1 6 6 H 1.48502 * 109.47126 * 149.99852 * 3 2 1 7 7 C 1.37874 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00057 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00006 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.46991 * 179.97438 * 9 7 2 11 11 C 1.39676 * 120.00363 * 90.00298 * 10 9 7 12 12 C 1.38910 * 120.07592 * 175.63384 * 11 10 9 13 13 C 1.38106 * 119.92162 * 179.97438 * 12 11 10 14 14 C 1.38284 * 120.07479 * 359.97438 * 13 12 11 15 15 C 1.38284 * 120.15263 * 359.97438 * 14 13 12 16 16 C 1.38107 * 120.07164 * 0.02562 * 15 14 13 17 17 C 1.46506 * 119.99918 * 270.00147 * 10 9 7 18 18 H 1.09001 * 110.67384 * 3.22695 * 17 10 9 19 19 C 1.54891 * 110.75541 * 126.46656 * 17 10 9 20 20 C 1.54269 * 104.19647 * 156.25666 * 19 17 10 21 21 C 1.53875 * 106.59731 * 336.38687 * 20 19 17 22 22 H 1.08995 * 110.03470 * 240.71394 * 21 20 19 23 23 N 1.46902 * 110.03230 * 119.28511 * 21 20 19 24 24 C 1.54264 * 106.59997 * 0.02562 * 21 20 19 25 25 H 0.97002 * 120.00142 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46776 * 60.00022 * 9 7 2 27 27 H 1.08997 * 109.47189 * 300.00173 * 9 7 2 28 28 H 1.07998 * 120.03924 * 359.97438 * 12 11 10 29 29 H 1.07997 * 119.96055 * 179.97438 * 13 12 11 30 30 H 1.08007 * 119.92432 * 179.72904 * 14 13 12 31 31 H 1.08002 * 119.96446 * 179.97438 * 15 14 13 32 32 H 1.08000 * 120.03646 * 179.97438 * 16 15 14 33 33 H 1.09000 * 110.48408 * 274.93059 * 19 17 10 34 34 H 1.08996 * 110.48872 * 37.44397 * 19 17 10 35 35 H 1.08995 * 110.03126 * 95.66795 * 20 19 17 36 36 H 1.09000 * 110.03117 * 217.05767 * 20 19 17 37 37 H 1.00903 * 111.00028 * 61.44953 * 23 21 20 38 38 H 1.00901 * 111.00129 * 185.40517 * 23 21 20 39 39 H 1.09000 * 110.48961 * 264.92987 * 24 21 20 40 40 H 1.09002 * 110.48837 * 142.28606 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2031 -3.6125 0.0015 11 6 2.6579 -4.1429 1.2109 12 6 3.4891 -5.2559 1.2143 13 6 3.9374 -5.7773 2.4120 14 6 3.5600 -5.1924 3.6069 15 6 2.7335 -4.0838 3.6071 16 6 2.2817 -3.5572 2.4130 17 6 2.6782 -4.1698 -1.2674 18 1 2.2732 -3.6089 -2.1097 19 6 4.2263 -4.1881 -1.3136 20 6 4.5613 -5.2946 -2.3350 21 6 3.3463 -6.2378 -2.3756 22 1 3.6434 -7.2427 -2.0757 23 7 2.7748 -6.2643 -3.7287 24 6 2.3150 -5.6713 -1.3780 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5574 -0.8880 27 1 0.6248 -2.5563 0.8919 28 1 3.7845 -5.7128 0.2814 29 1 4.5833 -6.6428 2.4153 30 1 3.9085 -5.6049 4.5423 31 1 2.4404 -3.6297 4.5422 32 1 1.6359 -2.6916 2.4139 33 1 4.6092 -3.2260 -1.6541 34 1 4.6343 -4.4347 -0.3334 35 1 4.7269 -4.8564 -3.3192 36 1 5.4487 -5.8412 -2.0157 37 1 3.4455 -6.6115 -4.3978 38 1 1.9256 -6.8088 -3.7520 39 1 2.4140 -6.1595 -0.4085 40 1 1.3033 -5.7919 -1.7653 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093221020.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:19 Heat of formation + Delta-G solvation = 20.141548 kcal Electronic energy + Delta-G solvation = -20012.978601 eV Core-core repulsion = 17212.634517 eV Total energy + Delta-G solvation = -2800.344084 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.10937 -38.82485 -36.65154 -34.74608 -33.07095 -31.50765 -30.64609 -29.66736 -28.30803 -26.70579 -24.63516 -23.03447 -22.52006 -20.93021 -20.65083 -18.57908 -18.00033 -17.47105 -16.78625 -16.27854 -16.07287 -15.92988 -15.48049 -14.86736 -14.79551 -14.65122 -14.28196 -13.89644 -13.83107 -13.39447 -13.07932 -12.76535 -12.58263 -12.56392 -12.35093 -12.25043 -12.16714 -12.01462 -11.85830 -11.62387 -11.43662 -11.01869 -10.64593 -10.40718 -9.59623 -9.49593 -8.36210 -7.79017 -6.36796 0.71594 0.94527 1.35010 1.35647 1.46919 2.32980 2.57495 3.06017 3.18750 3.63465 3.69444 3.78702 4.13648 4.20917 4.30694 4.46849 4.49068 4.52865 4.57778 4.59958 4.79155 4.83676 4.91871 4.96875 5.01035 5.11193 5.13115 5.16298 5.19432 5.31887 5.36481 5.41293 5.63743 5.72688 5.79093 5.91516 6.08121 6.26453 6.37167 6.55122 6.70407 6.86071 7.00257 7.35080 8.83506 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.014492 B = 0.007972 C = 0.005822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.623948 B = 3511.292546 C = 4808.442725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.012 3.988 3 Si 0.960 3.040 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.048 0.952 9 C 0.270 3.730 10 N -0.615 5.615 11 C 0.214 3.786 12 C -0.225 4.225 13 C -0.077 4.077 14 C -0.196 4.196 15 C -0.083 4.083 16 C -0.223 4.223 17 C 0.158 3.842 18 H 0.064 0.936 19 C -0.145 4.145 20 C -0.107 4.107 21 C 0.098 3.902 22 H 0.060 0.940 23 N -0.854 5.854 24 C -0.138 4.138 25 H 0.267 0.733 26 H 0.002 0.998 27 H 0.008 0.992 28 H 0.150 0.850 29 H 0.149 0.851 30 H 0.140 0.860 31 H 0.126 0.874 32 H 0.092 0.908 33 H 0.046 0.954 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.351 0.649 38 H 0.346 0.654 39 H 0.087 0.913 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.983 -14.902 -1.217 17.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.187 4.187 3 Si 0.785 3.215 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.066 0.934 9 C 0.148 3.852 10 N -0.320 5.320 11 C 0.110 3.890 12 C -0.247 4.247 13 C -0.095 4.095 14 C -0.216 4.216 15 C -0.102 4.102 16 C -0.246 4.246 17 C 0.053 3.947 18 H 0.082 0.918 19 C -0.183 4.183 20 C -0.145 4.145 21 C -0.014 4.014 22 H 0.077 0.923 23 N -0.387 5.387 24 C -0.177 4.177 25 H 0.075 0.925 26 H 0.020 0.980 27 H 0.026 0.974 28 H 0.167 0.833 29 H 0.166 0.834 30 H 0.157 0.843 31 H 0.144 0.856 32 H 0.111 0.889 33 H 0.065 0.935 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.165 0.835 38 H 0.160 0.840 39 H 0.106 0.894 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.669 -13.899 -1.332 16.435 hybrid contribution -0.194 0.670 -0.041 0.698 sum 8.475 -13.229 -1.373 15.771 Atomic orbital electron populations 1.70041 1.07369 1.28023 1.51259 1.25776 0.95680 1.02638 0.94634 0.85528 0.78553 0.78987 0.78462 1.19745 1.20284 1.19662 1.21757 0.93070 0.92001 1.50693 0.93384 1.18716 0.87468 0.83779 0.95207 1.46996 1.47096 1.35243 1.02683 1.18148 0.92746 0.92270 0.85857 1.21321 1.04504 0.98615 1.00289 1.21212 0.97830 0.99091 0.91397 1.21084 1.03015 0.98542 0.98959 1.21055 0.96482 0.96153 0.96499 1.20867 1.07560 1.03237 0.92913 1.21791 0.94280 0.93752 0.84851 0.91761 1.22936 0.95392 0.99097 1.00917 1.22129 0.97512 0.95697 0.99171 1.21795 0.93419 0.97461 0.88718 0.92257 1.58750 1.10324 1.63342 1.06253 1.23054 0.99234 0.95312 1.00079 0.92452 0.97958 0.97371 0.83312 0.83359 0.84267 0.85629 0.88949 0.93531 0.89831 0.90916 0.89503 0.83511 0.84002 0.89448 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.78 13.29 21.45 0.28 -55.49 16 2 C 0.01 0.68 5.46 84.65 0.46 1.14 16 3 Si 0.96 45.32 29.54 68.60 2.03 47.35 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 7 C -0.54 -31.03 9.37 25.60 0.24 -30.79 16 8 H 0.05 2.83 7.81 -2.91 -0.02 2.80 16 9 C 0.27 14.69 4.79 85.63 0.41 15.10 16 10 N -0.61 -27.51 2.64 -670.56 -1.77 -29.28 16 11 C 0.21 8.87 6.08 38.21 0.23 9.10 16 12 C -0.23 -7.35 6.26 22.40 0.14 -7.21 16 13 C -0.08 -2.13 10.04 22.25 0.22 -1.90 16 14 C -0.20 -5.64 10.04 22.29 0.22 -5.42 16 15 C -0.08 -2.89 10.04 22.25 0.22 -2.67 16 16 C -0.22 -9.63 9.17 22.40 0.21 -9.42 16 17 C 0.16 5.93 3.39 46.28 0.16 6.08 16 18 H 0.06 2.76 7.90 -2.39 -0.02 2.74 16 19 C -0.14 -4.65 5.75 31.67 0.18 -4.47 16 20 C -0.11 -2.48 6.51 31.32 0.20 -2.27 16 21 C 0.10 2.15 3.95 45.64 0.18 2.33 16 22 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 23 N -0.85 -17.23 9.12 -165.68 -1.51 -18.74 16 24 C -0.14 -4.05 5.47 31.66 0.17 -3.88 16 25 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 26 H 0.00 0.14 7.98 -2.39 -0.02 0.12 16 27 H 0.01 0.49 6.40 -2.39 -0.02 0.47 16 28 H 0.15 4.26 3.59 -2.91 -0.01 4.25 16 29 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 30 H 0.14 3.07 8.06 -2.91 -0.02 3.04 16 31 H 0.13 3.82 8.06 -2.91 -0.02 3.79 16 32 H 0.09 4.63 6.25 -2.91 -0.02 4.61 16 33 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.08 2.69 4.84 -2.39 -0.01 2.68 16 35 H 0.07 1.71 7.92 -2.39 -0.02 1.69 16 36 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.35 5.40 9.06 -89.69 -0.81 4.59 16 38 H 0.35 6.19 8.92 -89.69 -0.80 5.39 16 39 H 0.09 2.55 4.99 -2.39 -0.01 2.54 16 40 H 0.06 1.81 7.94 -2.39 -0.02 1.79 16 Total: -1.00 -65.85 312.70 1.73 -64.12 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: -0.56 Total: 26.32 kcal Atomic # 6 Polarization: -37.53 SS G_CDS: 3.26 Total: -34.27 kcal Atomic # 7 Polarization: -100.52 SS G_CDS: -2.99 Total: -103.51 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -65.85 1.73 -64.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093221020.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.258 kcal (2) G-P(sol) polarization free energy of solvation -65.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds