Wall clock time and date at job start Mon Mar 30 2020 06:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86798 * 119.99696 * 2 1 4 4 H 1.48504 * 109.47097 * 274.65483 * 3 2 1 5 5 H 1.48496 * 109.47494 * 34.65773 * 3 2 1 6 6 H 1.48508 * 109.47092 * 154.65645 * 3 2 1 7 7 C 1.39867 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99764 * 162.12353 * 7 2 1 9 9 C 1.41139 * 119.99852 * 342.11645 * 7 2 1 10 10 C 1.40885 * 120.15205 * 155.08974 * 9 7 2 11 11 C 1.36341 * 119.83610 * 180.02562 * 10 9 7 12 12 C 1.39562 * 120.16169 * 359.97438 * 11 10 9 13 13 N 1.38848 * 119.84062 * 179.97438 * 12 11 10 14 14 C 1.46504 * 119.99843 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.47338 * 180.02562 * 14 13 12 16 16 C 1.53121 * 109.52493 * 175.00202 * 15 14 13 17 17 C 1.53036 * 109.27696 * 177.56015 * 16 15 14 18 18 N 1.46853 * 109.52017 * 300.81309 * 17 16 15 19 19 C 1.46848 * 111.19512 * 61.75148 * 18 17 16 20 20 C 1.53038 * 109.51909 * 298.25300 * 19 18 17 21 21 C 1.39565 * 120.31332 * 0.25870 * 12 11 10 22 22 C 1.36344 * 120.16444 * 359.48066 * 21 12 11 23 23 H 0.96996 * 119.99858 * 359.97438 * 1 2 3 24 24 H 1.08006 * 120.08103 * 0.02562 * 10 9 7 25 25 H 1.08000 * 119.91416 * 179.97438 * 11 10 9 26 26 H 0.96998 * 120.00419 * 0.02562 * 13 12 11 27 27 H 1.09001 * 109.47639 * 60.00315 * 14 13 12 28 28 H 1.09005 * 109.47127 * 299.99983 * 14 13 12 29 29 H 1.09000 * 109.57705 * 54.83936 * 15 14 13 30 30 H 1.08996 * 109.50492 * 57.61203 * 16 15 14 31 31 H 1.08996 * 109.50057 * 297.49293 * 16 15 14 32 32 H 1.09001 * 109.46010 * 180.80257 * 17 16 15 33 33 H 1.08994 * 109.46803 * 60.83076 * 17 16 15 34 34 H 1.00908 * 110.99825 * 185.83863 * 18 17 16 35 35 H 1.09000 * 109.46827 * 58.27075 * 19 18 17 36 36 H 1.09005 * 109.46045 * 178.24348 * 19 18 17 37 37 H 1.08998 * 109.50296 * 299.23971 * 20 19 18 38 38 H 1.09005 * 109.50266 * 179.12602 * 20 19 18 39 39 H 1.08001 * 119.92124 * 179.71565 * 21 12 11 40 40 H 1.07998 * 120.08589 * 180.23478 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.3920 2.1033 -1.3955 5 1 1.4931 2.6223 0.7961 6 1 3.5864 1.4138 0.5993 7 6 2.0084 -1.2113 -0.0005 8 1 3.0494 -1.2337 -0.2877 9 6 1.3538 -2.4042 0.3743 10 6 1.8229 -3.6466 -0.0960 11 6 1.1853 -4.7950 0.2697 12 6 0.0710 -4.7418 1.1082 13 7 -0.5736 -5.9153 1.4760 14 6 -1.7440 -5.8635 2.3556 15 6 -2.2589 -7.2827 2.6036 16 6 -3.4033 -7.2415 3.6202 17 6 -3.9543 -8.6555 3.8182 18 7 -4.4357 -9.1789 2.5333 19 6 -3.3441 -9.2721 1.5555 20 6 -2.7748 -7.8766 1.2900 21 6 -0.4022 -3.5142 1.5740 22 6 0.2286 -2.3582 1.2208 23 1 -0.4850 0.8400 0.0004 24 1 2.6854 -3.6893 -0.7447 25 1 1.5436 -5.7480 -0.0905 26 1 -0.2489 -6.7695 1.1506 27 1 -2.5271 -5.2697 1.8840 28 1 -1.4647 -5.4075 3.3056 29 1 -1.4500 -7.9023 2.9906 30 1 -4.1955 -6.5907 3.2502 31 1 -3.0318 -6.8594 4.5709 32 1 -4.7786 -8.6275 4.5307 33 1 -3.1652 -9.3025 4.2012 34 1 -4.8902 -10.0717 2.6540 35 1 -2.5578 -9.9163 1.9491 36 1 -3.7253 -9.6920 0.6246 37 1 -3.5572 -7.2358 0.8833 38 1 -1.9544 -7.9481 0.5758 39 1 -1.2678 -3.4800 2.2189 40 1 -0.1363 -1.4092 1.5850 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094009971.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:14 Heat of formation + Delta-G solvation = -9.321238 kcal Electronic energy + Delta-G solvation = -18822.510006 eV Core-core repulsion = 16020.888320 eV Total energy + Delta-G solvation = -2801.621687 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.18331 -39.35027 -36.75346 -35.05476 -33.16994 -31.73056 -31.34372 -30.35514 -27.54784 -25.71677 -23.89910 -23.51061 -22.53288 -21.52038 -20.60886 -19.14798 -17.99044 -17.35598 -16.80356 -16.41659 -15.75597 -15.58790 -15.53303 -15.01365 -14.59178 -14.53020 -14.07339 -13.98623 -13.89007 -13.47795 -13.35043 -13.07034 -12.95538 -12.72303 -12.56220 -12.26480 -12.13258 -11.70492 -11.58725 -11.32165 -11.26027 -11.14580 -11.02945 -10.27894 -9.40671 -9.37293 -8.54454 -8.15445 -6.00311 1.11100 1.18474 1.40267 1.53039 1.59589 2.27875 2.84520 2.90922 3.32590 3.76516 3.82324 3.86943 3.95936 4.30129 4.40218 4.43716 4.47204 4.51027 4.59375 4.63482 4.76549 4.90158 4.91259 4.93522 5.03132 5.05891 5.15322 5.22091 5.24893 5.28768 5.45931 5.47778 5.69091 5.80814 5.96654 6.09126 6.19285 6.39357 6.54114 6.67451 6.87502 7.08834 7.15553 7.32898 8.49030 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.046513 B = 0.003525 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.842234 B = 7940.578033 C = 8263.585990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.031 3.969 3 Si 0.977 3.023 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.507 4.507 8 H 0.068 0.932 9 C 0.035 3.965 10 C -0.195 4.195 11 C -0.166 4.166 12 C 0.111 3.889 13 N -0.749 5.749 14 C 0.144 3.856 15 C -0.086 4.086 16 C -0.111 4.111 17 C 0.062 3.938 18 N -0.701 5.701 19 C 0.062 3.938 20 C -0.110 4.110 21 C -0.176 4.176 22 C -0.144 4.144 23 H 0.282 0.718 24 H 0.098 0.902 25 H 0.118 0.882 26 H 0.396 0.604 27 H 0.034 0.966 28 H 0.042 0.958 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.035 0.965 34 H 0.353 0.647 35 H 0.036 0.964 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.102 0.898 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.266 -15.707 6.375 18.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.181 4.181 3 Si 0.798 3.202 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.185 1.185 7 C -0.538 4.538 8 H 0.086 0.914 9 C 0.032 3.968 10 C -0.215 4.215 11 C -0.188 4.188 12 C 0.012 3.988 13 N -0.384 5.384 14 C 0.019 3.981 15 C -0.105 4.105 16 C -0.149 4.149 17 C -0.067 4.067 18 N -0.334 5.334 19 C -0.068 4.068 20 C -0.148 4.148 21 C -0.198 4.198 22 C -0.164 4.164 23 H 0.092 0.908 24 H 0.116 0.884 25 H 0.136 0.864 26 H 0.230 0.770 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.053 0.947 34 H 0.172 0.828 35 H 0.054 0.946 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.120 0.880 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.828 -14.879 6.259 17.940 hybrid contribution 0.917 0.054 -0.016 0.918 sum -6.911 -14.825 6.243 17.508 Atomic orbital electron populations 1.69927 1.08797 1.29766 1.38587 1.26630 0.95453 1.04154 0.91837 0.85283 0.79156 0.76614 0.79117 1.18997 1.19301 1.18495 1.19594 0.97999 0.92767 1.43437 0.91377 1.17814 0.93602 0.93102 0.92267 1.20768 1.03083 0.92871 1.04791 1.20107 0.97928 0.97690 1.03078 1.17471 0.94873 0.86658 0.99824 1.43900 1.33007 1.04854 1.56635 1.21133 0.87132 0.97060 0.92800 1.21297 0.98019 0.94513 0.96675 1.21578 0.97017 0.97601 0.98724 1.21898 0.99124 0.94822 0.90899 1.60247 1.29853 1.33186 1.10089 1.21890 0.92602 0.95906 0.96375 1.21597 0.99997 0.96562 0.96639 1.20239 1.01958 0.92008 1.05618 1.20851 0.98975 0.96616 0.99932 0.90788 0.88429 0.86382 0.76961 0.94730 0.93992 0.90606 0.91944 0.90604 0.89519 0.94682 0.82844 0.94622 0.90089 0.92686 0.91601 0.88045 0.88436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.89 10.98 21.82 0.24 -46.65 16 2 C 0.03 1.66 5.13 85.23 0.44 2.10 16 3 Si 0.98 40.70 29.59 68.60 2.03 42.73 16 4 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 5 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 6 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 7 C -0.51 -28.99 9.03 23.38 0.21 -28.78 16 8 H 0.07 3.77 7.91 -2.91 -0.02 3.75 16 9 C 0.04 1.99 5.57 -21.27 -0.12 1.87 16 10 C -0.20 -9.94 9.74 22.48 0.22 -9.72 16 11 C -0.17 -7.39 9.82 22.15 0.22 -7.17 16 12 C 0.11 4.83 6.67 38.67 0.26 5.09 16 13 N -0.75 -24.92 5.45 -338.99 -1.85 -26.77 16 14 C 0.14 4.15 4.28 86.38 0.37 4.52 16 15 C -0.09 -1.85 2.29 -10.71 -0.02 -1.87 16 16 C -0.11 -2.08 5.38 30.65 0.16 -1.92 16 17 C 0.06 0.94 6.55 86.32 0.57 1.51 16 18 N -0.70 -11.19 6.85 -513.99 -3.52 -14.71 16 19 C 0.06 1.02 6.55 86.33 0.57 1.58 16 20 C -0.11 -2.30 5.22 30.65 0.16 -2.14 16 21 C -0.18 -8.52 9.23 22.15 0.20 -8.32 16 22 C -0.14 -7.96 8.63 22.48 0.19 -7.76 16 23 H 0.28 14.26 8.30 -92.71 -0.77 13.49 16 24 H 0.10 4.69 8.06 -2.91 -0.02 4.67 16 25 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 26 H 0.40 11.32 7.69 -92.71 -0.71 10.61 16 27 H 0.03 1.11 7.92 -2.39 -0.02 1.09 16 28 H 0.04 1.27 7.94 -2.38 -0.02 1.25 16 29 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.35 4.14 8.90 -89.69 -0.80 3.34 16 35 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.07 1.40 7.27 -2.38 -0.02 1.38 16 39 H 0.10 4.51 6.68 -2.91 -0.02 4.49 16 40 H 0.10 5.69 6.18 -2.91 -0.02 5.67 16 Total: -1.00 -63.17 318.32 -0.15 -63.32 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: -0.48 Total: 33.08 kcal Atomic # 6 Polarization: -54.42 SS G_CDS: 3.42 Total: -51.00 kcal Atomic # 7 Polarization: -83.01 SS G_CDS: -5.13 Total: -88.14 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Total: -63.17 -0.15 -63.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094009971.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.001 kcal (2) G-P(sol) polarization free energy of solvation -63.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds