Wall clock time and date at job start Mon Mar 30 2020 06:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30901 * 1 3 3 Si 1.86800 * 119.99989 * 2 1 4 4 H 1.48497 * 109.47248 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46915 * 299.99282 * 3 2 1 6 6 H 1.48501 * 109.47418 * 59.99175 * 3 2 1 7 7 C 1.39867 * 120.00352 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00109 * 197.96947 * 7 2 1 9 9 C 1.41138 * 119.99652 * 17.96433 * 7 2 1 10 10 C 1.40881 * 120.15479 * 204.59605 * 9 7 2 11 11 C 1.36343 * 119.83926 * 180.02562 * 10 9 7 12 12 C 1.39572 * 120.15642 * 359.97438 * 11 10 9 13 13 N 1.38852 * 119.84000 * 179.97438 * 12 11 10 14 14 C 1.46498 * 120.00065 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.47609 * 155.00123 * 14 13 12 16 16 C 1.52995 * 109.47571 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.46789 * 299.99977 * 16 15 14 18 18 N 1.46908 * 109.47148 * 179.97438 * 17 16 15 19 19 C 1.53001 * 109.47374 * 60.00294 * 17 16 15 20 20 C 1.52999 * 109.47090 * 274.99890 * 14 13 12 21 21 C 1.39562 * 120.31667 * 0.25801 * 12 11 10 22 22 C 1.36342 * 120.16168 * 359.48068 * 21 12 11 23 23 H 0.96995 * 120.00369 * 0.02562 * 1 2 3 24 24 H 1.08006 * 120.08436 * 0.02562 * 10 9 7 25 25 H 1.07989 * 119.92152 * 179.97438 * 11 10 9 26 26 H 0.96999 * 120.00356 * 0.02562 * 13 12 11 27 27 H 1.08997 * 109.47200 * 35.00024 * 14 13 12 28 28 H 1.08997 * 109.46921 * 59.99730 * 15 14 13 29 29 H 1.09007 * 109.46549 * 300.00053 * 15 14 13 30 30 H 1.08997 * 109.47248 * 59.99895 * 16 15 14 31 31 H 1.08993 * 109.47354 * 180.02562 * 16 15 14 32 32 H 1.08999 * 109.47218 * 299.99428 * 17 16 15 33 33 H 1.00898 * 111.00256 * 179.97438 * 18 17 16 34 34 H 1.00903 * 111.00067 * 303.95566 * 18 17 16 35 35 H 1.08997 * 109.47240 * 59.99729 * 19 17 16 36 36 H 1.08996 * 109.47218 * 180.02562 * 19 17 16 37 37 H 1.08999 * 109.47227 * 60.00002 * 20 14 13 38 38 H 1.08997 * 109.47209 * 300.00128 * 20 14 13 39 39 H 1.08003 * 119.92002 * 179.71916 * 21 12 11 40 40 H 1.08005 * 120.08657 * 180.23344 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.7030 1.3464 0.0006 5 1 1.8843 2.3963 -1.2126 6 1 1.8842 2.3966 1.2124 7 6 2.0084 -1.2112 0.0005 8 1 3.0489 -1.2339 0.2891 9 6 1.3543 -2.4039 -0.3759 10 6 1.8268 -3.6472 0.0887 11 6 1.1903 -4.7953 -0.2794 12 6 0.0730 -4.7410 -1.1140 13 7 -0.5699 -5.9144 -1.4853 14 6 -1.7427 -5.8615 -2.3616 15 6 -1.8830 -7.1903 -3.1068 16 6 -3.1074 -7.1348 -4.0225 17 6 -4.3617 -6.8864 -3.1822 18 7 -5.5374 -6.8324 -4.0615 19 6 -4.2214 -5.5574 -2.4371 20 6 -2.9967 -5.6134 -1.5209 21 6 -0.3977 -3.5133 -1.5820 22 6 0.2256 -2.3567 -1.2177 23 1 -0.4850 0.8400 -0.0004 24 1 2.6911 -3.6907 0.7349 25 1 1.5516 -5.7491 0.0756 26 1 -0.2425 -6.7692 -1.1644 27 1 -1.6219 -5.0521 -3.0816 28 1 -2.0037 -7.9997 -2.3867 29 1 -0.9895 -7.3671 -3.7057 30 1 -2.9863 -6.3256 -4.7425 31 1 -3.2077 -8.0817 -4.5530 32 1 -4.4829 -7.6957 -2.4623 33 1 -6.3793 -6.6695 -3.5299 34 1 -5.4209 -6.1321 -4.7785 35 1 -4.1003 -4.7482 -3.1572 36 1 -5.1148 -5.3807 -1.8382 37 1 -2.8968 -4.6667 -0.9900 38 1 -3.1174 -6.4227 -0.8009 39 1 -1.2602 -3.4790 -2.2312 40 1 -0.1420 -1.4070 -1.5776 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094079871.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:11 Heat of formation + Delta-G solvation = -15.721348 kcal Electronic energy + Delta-G solvation = -19182.224021 eV Core-core repulsion = 16380.324805 eV Total energy + Delta-G solvation = -2801.899216 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.45469 -39.18113 -36.57999 -35.01060 -33.05064 -31.78989 -31.29421 -30.38806 -27.94073 -25.90346 -23.79581 -23.19202 -22.58133 -21.49139 -20.79001 -19.16307 -17.87197 -17.04310 -16.83440 -16.46950 -16.12126 -15.58107 -15.15827 -14.90542 -14.71315 -14.51001 -14.04024 -13.77869 -13.71585 -13.39929 -13.21662 -13.07328 -12.83777 -12.74167 -12.34033 -12.20064 -12.08417 -12.06094 -11.57125 -11.40028 -11.35891 -11.13514 -10.99527 -10.25162 -9.57535 -9.40414 -8.55821 -8.15414 -6.00937 1.09808 1.18010 1.39298 1.53677 1.57524 2.26855 2.82790 2.87330 3.63614 3.72735 3.81986 3.88677 4.14580 4.24718 4.31881 4.39698 4.50164 4.51163 4.52891 4.55756 4.81176 4.89749 5.02566 5.07948 5.12014 5.15989 5.19585 5.22408 5.28628 5.37679 5.46377 5.48348 5.70151 5.81708 5.96736 6.18647 6.25493 6.39389 6.61157 6.67742 6.88331 7.08157 7.16261 7.34553 8.47827 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.032028 B = 0.004263 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.020479 B = 6566.160729 C = 7173.747438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.032 3.968 3 Si 0.976 3.024 4 H -0.260 1.260 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.507 4.507 8 H 0.067 0.933 9 C 0.034 3.966 10 C -0.196 4.196 11 C -0.167 4.167 12 C 0.116 3.884 13 N -0.747 5.747 14 C 0.161 3.839 15 C -0.113 4.113 16 C -0.102 4.102 17 C 0.097 3.903 18 N -0.848 5.848 19 C -0.143 4.143 20 C -0.126 4.126 21 C -0.173 4.173 22 C -0.144 4.144 23 H 0.281 0.719 24 H 0.096 0.904 25 H 0.118 0.882 26 H 0.396 0.604 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.347 0.653 34 H 0.344 0.656 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.034 0.966 38 H 0.066 0.934 39 H 0.101 0.899 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.480 -11.286 -6.557 15.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.180 4.180 3 Si 0.798 3.202 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.193 1.193 7 C -0.538 4.538 8 H 0.085 0.915 9 C 0.032 3.968 10 C -0.216 4.216 11 C -0.189 4.189 12 C 0.016 3.984 13 N -0.380 5.380 14 C 0.055 3.945 15 C -0.152 4.152 16 C -0.141 4.141 17 C -0.015 4.015 18 N -0.377 5.377 19 C -0.183 4.183 20 C -0.166 4.166 21 C -0.196 4.196 22 C -0.164 4.164 23 H 0.092 0.908 24 H 0.114 0.886 25 H 0.136 0.864 26 H 0.231 0.769 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.160 0.840 34 H 0.156 0.844 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.053 0.947 38 H 0.084 0.916 39 H 0.119 0.881 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.636 -11.836 -6.853 16.175 hybrid contribution 0.405 1.897 0.838 2.113 sum -8.231 -9.940 -6.014 14.238 Atomic orbital electron populations 1.69927 1.08788 1.29674 1.38754 1.26604 0.95427 1.04091 0.91832 0.85259 0.79420 0.76872 0.78693 1.18405 1.19128 1.19337 1.19623 0.98009 0.92816 1.43349 0.91462 1.17809 0.93549 0.93062 0.92422 1.20761 1.03064 0.92897 1.04858 1.20116 0.97946 0.97646 1.03232 1.17447 0.94669 0.86734 0.99534 1.44012 1.32499 1.04799 1.56715 1.20751 0.84487 0.98272 0.90976 1.21677 0.98803 0.95894 0.98802 1.21436 0.92491 1.02782 0.97363 1.21412 0.90705 0.95516 0.93856 1.58973 1.04621 1.56853 1.17220 1.22340 0.97617 0.99380 0.98972 1.21917 0.95143 1.00975 0.98561 1.20227 1.02180 0.91930 1.05221 1.20857 0.98964 0.96645 0.99938 0.90824 0.88564 0.86397 0.76937 0.92957 0.90485 0.91117 0.92196 0.90088 0.90089 0.83955 0.84357 0.92581 0.91599 0.94704 0.91559 0.88086 0.88505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.69 10.96 21.82 0.24 -46.45 16 2 C 0.03 1.71 5.13 85.23 0.44 2.15 16 3 Si 0.98 40.59 29.60 68.60 2.03 42.62 16 4 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 5 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 6 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 7 C -0.51 -28.93 9.03 23.38 0.21 -28.72 16 8 H 0.07 3.73 7.91 -2.91 -0.02 3.71 16 9 C 0.03 1.95 5.57 -21.27 -0.12 1.83 16 10 C -0.20 -9.93 9.74 22.47 0.22 -9.71 16 11 C -0.17 -7.38 9.82 22.15 0.22 -7.16 16 12 C 0.12 4.93 6.65 38.67 0.26 5.19 16 13 N -0.75 -24.16 5.22 -318.54 -1.66 -25.82 16 14 C 0.16 4.42 2.14 44.99 0.10 4.51 16 15 C -0.11 -2.28 5.39 30.59 0.16 -2.11 16 16 C -0.10 -1.82 5.46 30.59 0.17 -1.65 16 17 C 0.10 1.69 3.25 44.91 0.15 1.84 16 18 N -0.85 -12.95 9.25 -168.67 -1.56 -14.51 16 19 C -0.14 -2.99 5.49 30.61 0.17 -2.83 16 20 C -0.13 -3.37 5.43 30.61 0.17 -3.20 16 21 C -0.17 -8.25 8.75 22.15 0.19 -8.06 16 22 C -0.14 -7.90 8.64 22.48 0.19 -7.71 16 23 H 0.28 14.14 8.30 -92.71 -0.77 13.37 16 24 H 0.10 4.63 8.06 -2.91 -0.02 4.61 16 25 H 0.12 4.38 8.06 -2.92 -0.02 4.36 16 26 H 0.40 10.98 8.60 -92.71 -0.80 10.19 16 27 H 0.05 1.65 6.44 -2.39 -0.02 1.64 16 28 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.35 4.47 9.04 -89.70 -0.81 3.66 16 34 H 0.34 4.79 8.98 -89.69 -0.81 3.99 16 35 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.03 1.17 7.69 -2.39 -0.02 1.15 16 38 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.10 4.43 6.06 -2.91 -0.02 4.41 16 40 H 0.10 5.61 6.16 -2.91 -0.02 5.60 16 Total: -1.00 -62.39 317.27 0.21 -62.18 By element: Atomic # 1 Polarization: 38.97 SS G_CDS: -1.36 Total: 37.61 kcal Atomic # 6 Polarization: -58.15 SS G_CDS: 2.52 Total: -55.63 kcal Atomic # 7 Polarization: -83.80 SS G_CDS: -2.98 Total: -86.78 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Total: -62.39 0.21 -62.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094079871.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.455 kcal (2) G-P(sol) polarization free energy of solvation -62.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds