Wall clock time and date at job start Mon Mar 30 2020 07:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47218 * 2 1 4 4 H 1.09001 * 109.47148 * 56.16914 * 3 2 1 5 5 C 1.50703 * 109.47147 * 176.16782 * 3 2 1 6 6 H 1.08001 * 119.99491 * 119.99886 * 5 3 2 7 7 C 1.37875 * 120.00145 * 300.00017 * 5 3 2 8 8 N 1.31514 * 120.00021 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00036 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46925 * 89.99848 * 9 7 5 11 11 H 1.48493 * 109.47054 * 210.00056 * 9 7 5 12 12 H 1.48505 * 109.46898 * 330.00376 * 9 7 5 13 13 N 1.46904 * 109.47191 * 296.17200 * 3 2 1 14 14 C 1.46892 * 111.00003 * 142.45470 * 13 3 2 15 15 H 1.09006 * 110.34754 * 325.28322 * 14 13 3 16 16 C 1.54344 * 110.29944 * 203.16284 * 14 13 3 17 17 C 1.54336 * 102.40057 * 267.45651 * 16 14 13 18 18 C 1.51396 * 105.16671 * 333.61710 * 17 16 14 19 19 C 1.38372 * 130.31771 * 197.21288 * 18 17 16 20 20 C 1.38772 * 120.15606 * 180.02562 * 19 18 17 21 21 N 1.39681 * 120.11054 * 180.27755 * 20 19 18 22 22 C 1.38923 * 119.77580 * 359.97438 * 20 19 18 23 23 C 1.37964 * 119.86145 * 359.97438 * 22 20 19 24 24 C 1.38282 * 109.75185 * 17.20815 * 18 17 16 25 25 H 1.09002 * 109.46863 * 55.23478 * 1 2 3 26 26 H 1.08994 * 109.47210 * 175.23324 * 1 2 3 27 27 H 1.08998 * 109.47341 * 295.23932 * 1 2 3 28 28 H 1.08998 * 109.46953 * 239.99807 * 2 1 3 29 29 H 1.09005 * 109.46549 * 119.99753 * 2 1 3 30 30 H 0.96994 * 120.00091 * 179.97438 * 8 7 5 31 31 H 1.00901 * 110.99222 * 266.40651 * 13 3 2 32 32 H 1.09003 * 110.82085 * 149.22808 * 16 14 13 33 33 H 1.09002 * 110.99122 * 25.75922 * 16 14 13 34 34 H 1.08999 * 110.30261 * 214.70088 * 17 16 14 35 35 H 1.08999 * 110.38854 * 92.58434 * 17 16 14 36 36 H 1.08000 * 119.92451 * 359.97438 * 19 18 17 37 37 H 0.97001 * 119.99592 * 179.72351 * 21 20 19 38 38 H 0.96993 * 120.00121 * 359.71776 * 21 20 19 39 39 H 1.07999 * 120.07675 * 179.97438 * 22 20 19 40 40 H 1.07999 * 119.84610 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6217 1.9757 0.8537 5 6 3.5441 1.4435 0.0950 6 1 4.1343 1.8934 -0.6897 7 6 4.1665 0.8702 1.1834 8 7 3.4477 0.3219 2.1386 9 14 6.0308 0.8708 1.3008 10 1 6.4821 2.0990 2.0030 11 1 6.4796 -0.3254 2.0575 12 1 6.6128 0.8396 -0.0652 13 7 1.6273 2.1078 -1.2430 14 6 1.2648 3.5094 -0.9946 15 1 0.7933 3.6114 -0.0170 16 6 0.3190 4.0222 -2.1013 17 6 1.3023 4.6427 -3.1163 18 6 2.5129 5.0440 -2.3004 19 6 3.5491 5.9099 -2.6024 20 6 4.5672 6.1257 -1.6845 21 7 5.6097 7.0044 -1.9881 22 6 4.5428 5.4697 -0.4602 23 6 3.5070 4.6081 -0.1630 24 6 2.4913 4.3926 -1.0808 25 1 -0.3633 0.5860 -0.8443 26 1 -0.3633 -1.0240 -0.0854 27 1 -0.3634 0.4382 0.9295 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 3.8856 -0.0818 2.9042 31 1 2.3480 2.0398 -1.9459 32 1 -0.3618 4.7779 -1.7097 33 1 -0.2359 3.1997 -2.5527 34 1 0.8567 5.5186 -3.5876 35 1 1.5819 3.9084 -3.8718 36 1 3.5660 6.4183 -3.5551 37 1 6.3184 7.1571 -1.3436 38 1 5.6250 7.4618 -2.8433 39 1 5.3328 5.6338 0.2576 40 1 3.4885 4.0980 0.7887 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094088812.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:20 Heat of formation + Delta-G solvation = 14.638420 kcal Electronic energy + Delta-G solvation = -20017.437833 eV Core-core repulsion = 17216.855115 eV Total energy + Delta-G solvation = -2800.582718 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.73197 -36.82588 -35.01659 -32.82623 -31.90142 -30.92845 -29.19093 -27.35991 -26.56281 -24.68961 -22.58998 -22.08849 -20.29847 -19.76510 -19.35569 -16.76646 -16.52426 -16.08279 -15.17184 -14.96058 -14.44767 -14.11319 -13.45008 -13.23416 -12.90331 -12.72052 -12.66019 -12.46357 -12.12024 -11.52561 -11.36249 -11.21761 -11.12971 -10.91846 -10.75326 -10.65246 -10.43251 -10.26737 -10.06235 -9.72048 -9.51843 -9.29317 -8.92694 -8.32837 -8.19160 -7.40044 -6.86679 -5.94796 -4.03930 1.96217 2.14462 3.28830 3.36611 3.41030 4.08193 4.38166 4.44279 4.99066 5.17415 5.29957 5.46075 5.48660 5.61871 5.76857 5.92734 5.94452 6.09863 6.24356 6.34756 6.43868 6.46412 6.49418 6.58052 6.65503 6.71047 6.77725 6.84040 7.01736 7.19271 7.24006 7.38555 7.41810 7.55153 7.65501 7.84022 7.85284 7.97364 8.17219 8.22189 8.42441 8.75288 9.09285 9.61770 11.06374 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.015343 B = 0.009073 C = 0.006030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.551032 B = 3085.392979 C = 4642.619424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 C 0.215 3.785 4 H 0.028 0.972 5 C -0.527 4.527 6 H 0.055 0.945 7 C 0.067 3.933 8 N -0.887 5.887 9 Si 0.882 3.118 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.276 1.276 13 N -0.674 5.674 14 C 0.137 3.863 15 H 0.073 0.927 16 C -0.112 4.112 17 C -0.079 4.079 18 C -0.054 4.054 19 C -0.198 4.198 20 C 0.206 3.794 21 N -0.886 5.886 22 C -0.205 4.205 23 C -0.024 4.024 24 C -0.160 4.160 25 H 0.050 0.950 26 H 0.023 0.977 27 H 0.034 0.966 28 H 0.030 0.970 29 H 0.088 0.912 30 H 0.259 0.741 31 H 0.331 0.669 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.107 0.893 37 H 0.394 0.606 38 H 0.392 0.608 39 H 0.112 0.888 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.245 10.273 -7.352 12.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.144 4.144 3 C 0.107 3.893 4 H 0.046 0.954 5 C -0.566 4.566 6 H 0.074 0.926 7 C -0.135 4.135 8 N -0.526 5.526 9 Si 0.710 3.290 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.201 1.201 13 N -0.302 5.302 14 C 0.026 3.974 15 H 0.091 0.909 16 C -0.151 4.151 17 C -0.116 4.116 18 C -0.055 4.055 19 C -0.221 4.221 20 C 0.104 3.896 21 N -0.426 5.426 22 C -0.227 4.227 23 C -0.043 4.043 24 C -0.164 4.164 25 H 0.069 0.931 26 H 0.042 0.958 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.106 0.894 30 H 0.069 0.931 31 H 0.148 0.852 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.125 0.875 37 H 0.221 0.779 38 H 0.219 0.781 39 H 0.130 0.870 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.950 9.868 -7.112 12.320 hybrid contribution 2.588 0.604 0.254 2.670 sum 0.638 10.473 -6.859 12.535 Atomic orbital electron populations 1.21717 0.99219 0.98417 1.00238 1.21505 0.91911 0.99456 1.01539 1.19193 0.92979 0.91065 0.86064 0.95430 1.21811 0.92309 1.36848 1.05654 0.92646 1.24888 0.97487 0.95272 0.95870 1.69878 1.34675 1.38323 1.09706 0.86749 0.86768 0.77400 0.78044 1.20833 1.21368 1.20062 1.61068 1.46094 1.10186 1.12816 1.20901 0.90785 0.88002 0.97723 0.90915 1.22337 0.96797 0.99718 0.96198 1.21030 0.93051 0.99829 0.97656 1.20321 0.94809 0.94795 0.95624 1.19778 0.96612 1.05964 0.99722 1.17550 0.88203 0.90395 0.93494 1.42341 1.27306 1.51191 1.21733 1.20458 1.01821 1.03760 0.96694 1.20601 0.91266 0.93016 0.99392 1.21138 0.99584 1.00664 0.94987 0.93097 0.95786 0.94730 0.95132 0.89354 0.93053 0.85163 0.91845 0.90017 0.91802 0.90578 0.87493 0.77870 0.78097 0.86955 0.85376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.85 37.16 0.37 -2.48 16 2 C -0.11 -2.52 5.44 -26.73 -0.15 -2.66 16 3 C 0.21 5.17 2.04 -68.86 -0.14 5.03 16 4 H 0.03 0.74 7.25 -51.93 -0.38 0.36 16 5 C -0.53 -13.77 6.90 -34.44 -0.24 -14.01 16 6 H 0.06 1.49 7.38 -52.49 -0.39 1.10 16 7 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 8 N -0.89 -24.75 11.30 55.43 0.63 -24.13 16 9 Si 0.88 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.67 -13.91 5.43 -101.07 -0.55 -14.46 16 14 C 0.14 2.54 3.15 -67.82 -0.21 2.32 16 15 H 0.07 1.44 7.40 -51.93 -0.38 1.06 16 16 C -0.11 -1.69 6.77 -25.33 -0.17 -1.86 16 17 C -0.08 -1.12 6.77 -26.84 -0.18 -1.30 16 18 C -0.05 -0.90 6.13 -104.21 -0.64 -1.54 16 19 C -0.20 -3.10 9.89 -39.33 -0.39 -3.49 16 20 C 0.21 3.23 6.75 -83.83 -0.57 2.66 16 21 N -0.89 -10.28 9.09 32.39 0.29 -9.99 16 22 C -0.20 -3.60 9.90 -39.43 -0.39 -3.99 16 23 C -0.02 -0.46 8.87 -39.56 -0.35 -0.81 16 24 C -0.16 -3.01 5.26 -104.14 -0.55 -3.56 16 25 H 0.05 1.00 7.59 -51.93 -0.39 0.61 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.09 2.35 5.98 -51.93 -0.31 2.04 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.33 7.12 7.86 -39.29 -0.31 6.81 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.20 8.09 -51.93 -0.42 0.78 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.39 3.95 8.84 -40.82 -0.36 3.58 16 38 H 0.39 3.67 8.84 -40.82 -0.36 3.30 16 39 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 40 H 0.13 2.78 7.58 -52.49 -0.40 2.38 16 LS Contribution 319.77 15.07 4.82 4.82 Total: -1.00 -27.80 319.77 -9.75 -37.55 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -6.22 Total: 13.99 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: -3.70 Total: -23.99 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: 0.37 Total: -48.57 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.80 -9.75 -37.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094088812.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.191 kcal (2) G-P(sol) polarization free energy of solvation -27.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds