Wall clock time and date at job start Mon Mar 30 2020 07:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47218 * 2 1 4 4 H 1.09001 * 109.47148 * 56.16914 * 3 2 1 5 5 C 1.50703 * 109.47147 * 176.16782 * 3 2 1 6 6 H 1.08001 * 119.99491 * 119.99886 * 5 3 2 7 7 C 1.37875 * 120.00145 * 300.00017 * 5 3 2 8 8 N 1.31514 * 120.00021 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00036 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46925 * 89.99848 * 9 7 5 11 11 H 1.48493 * 109.47054 * 210.00056 * 9 7 5 12 12 H 1.48505 * 109.46898 * 330.00376 * 9 7 5 13 13 N 1.46904 * 109.47191 * 296.17200 * 3 2 1 14 14 C 1.46892 * 111.00003 * 142.45470 * 13 3 2 15 15 H 1.09006 * 110.34754 * 325.28322 * 14 13 3 16 16 C 1.54344 * 110.29944 * 203.16284 * 14 13 3 17 17 C 1.54336 * 102.40057 * 267.45651 * 16 14 13 18 18 C 1.51396 * 105.16671 * 333.61710 * 17 16 14 19 19 C 1.38372 * 130.31771 * 197.21288 * 18 17 16 20 20 C 1.38772 * 120.15606 * 180.02562 * 19 18 17 21 21 N 1.39681 * 120.11054 * 180.27755 * 20 19 18 22 22 C 1.38923 * 119.77580 * 359.97438 * 20 19 18 23 23 C 1.37964 * 119.86145 * 359.97438 * 22 20 19 24 24 C 1.38282 * 109.75185 * 17.20815 * 18 17 16 25 25 H 1.09002 * 109.46863 * 55.23478 * 1 2 3 26 26 H 1.08994 * 109.47210 * 175.23324 * 1 2 3 27 27 H 1.08998 * 109.47341 * 295.23932 * 1 2 3 28 28 H 1.08998 * 109.46953 * 239.99807 * 2 1 3 29 29 H 1.09005 * 109.46549 * 119.99753 * 2 1 3 30 30 H 0.96994 * 120.00091 * 179.97438 * 8 7 5 31 31 H 1.00901 * 110.99222 * 266.40651 * 13 3 2 32 32 H 1.09003 * 110.82085 * 149.22808 * 16 14 13 33 33 H 1.09002 * 110.99122 * 25.75922 * 16 14 13 34 34 H 1.08999 * 110.30261 * 214.70088 * 17 16 14 35 35 H 1.08999 * 110.38854 * 92.58434 * 17 16 14 36 36 H 1.08000 * 119.92451 * 359.97438 * 19 18 17 37 37 H 0.97001 * 119.99592 * 179.72351 * 21 20 19 38 38 H 0.96993 * 120.00121 * 359.71776 * 21 20 19 39 39 H 1.07999 * 120.07675 * 179.97438 * 22 20 19 40 40 H 1.07999 * 119.84610 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6217 1.9757 0.8537 5 6 3.5441 1.4435 0.0950 6 1 4.1343 1.8934 -0.6897 7 6 4.1665 0.8702 1.1834 8 7 3.4477 0.3219 2.1386 9 14 6.0308 0.8708 1.3008 10 1 6.4821 2.0990 2.0030 11 1 6.4796 -0.3254 2.0575 12 1 6.6128 0.8396 -0.0652 13 7 1.6273 2.1078 -1.2430 14 6 1.2648 3.5094 -0.9946 15 1 0.7933 3.6114 -0.0170 16 6 0.3190 4.0222 -2.1013 17 6 1.3023 4.6427 -3.1163 18 6 2.5129 5.0440 -2.3004 19 6 3.5491 5.9099 -2.6024 20 6 4.5672 6.1257 -1.6845 21 7 5.6097 7.0044 -1.9881 22 6 4.5428 5.4697 -0.4602 23 6 3.5070 4.6081 -0.1630 24 6 2.4913 4.3926 -1.0808 25 1 -0.3633 0.5860 -0.8443 26 1 -0.3633 -1.0240 -0.0854 27 1 -0.3634 0.4382 0.9295 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 3.8856 -0.0818 2.9042 31 1 2.3480 2.0398 -1.9459 32 1 -0.3618 4.7779 -1.7097 33 1 -0.2359 3.1997 -2.5527 34 1 0.8567 5.5186 -3.5876 35 1 1.5819 3.9084 -3.8718 36 1 3.5660 6.4183 -3.5551 37 1 6.3184 7.1571 -1.3436 38 1 5.6250 7.4618 -2.8433 39 1 5.3328 5.6338 0.2576 40 1 3.4885 4.0980 0.7887 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094088812.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:20 Heat of formation + Delta-G solvation = -2.130676 kcal Electronic energy + Delta-G solvation = -20018.164996 eV Core-core repulsion = 17216.855115 eV Total energy + Delta-G solvation = -2801.309881 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.06668 -38.26940 -36.67004 -34.19992 -33.67840 -32.56114 -30.63257 -28.65217 -28.32965 -26.22766 -24.45157 -23.42541 -21.56404 -21.32368 -21.07260 -18.67522 -17.70403 -17.36540 -16.83745 -16.50620 -16.04374 -15.39447 -15.15370 -14.83645 -14.51577 -14.30473 -13.96466 -13.80970 -13.64619 -13.22575 -13.08902 -12.95791 -12.67854 -12.59547 -12.47225 -12.16869 -11.97602 -11.83320 -11.56484 -11.45424 -11.10956 -10.98727 -10.83056 -10.41542 -9.50790 -9.05851 -8.19645 -8.00549 -6.17601 0.63114 0.80060 1.34065 1.36801 1.45311 2.41271 3.01778 3.05507 3.20769 3.70697 3.81539 4.02748 4.24671 4.41150 4.44195 4.59296 4.63831 4.66184 4.82875 4.90375 4.97194 4.98772 5.01096 5.20118 5.22306 5.26545 5.37705 5.41780 5.47958 5.52898 5.60746 5.67785 5.75892 5.83717 6.03414 6.10098 6.17322 6.28377 6.49769 6.68048 6.89043 7.08568 7.10668 7.50710 8.96521 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.015343 B = 0.009073 C = 0.006030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.551032 B = 3085.392979 C = 4642.619424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.102 4.102 3 C 0.225 3.775 4 H -0.007 1.007 5 C -0.524 4.524 6 H 0.045 0.955 7 C 0.022 3.978 8 N -0.913 5.913 9 Si 0.936 3.064 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.661 5.661 14 C 0.131 3.869 15 H 0.047 0.953 16 C -0.102 4.102 17 C -0.072 4.072 18 C -0.051 4.051 19 C -0.200 4.200 20 C 0.215 3.785 21 N -0.868 5.868 22 C -0.223 4.223 23 C -0.047 4.047 24 C -0.189 4.189 25 H 0.061 0.939 26 H 0.043 0.957 27 H 0.027 0.973 28 H 0.026 0.974 29 H 0.058 0.942 30 H 0.259 0.741 31 H 0.328 0.672 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.139 0.861 37 H 0.403 0.597 38 H 0.407 0.593 39 H 0.118 0.882 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.100 11.828 -9.940 15.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.141 4.141 3 C 0.116 3.884 4 H 0.011 0.989 5 C -0.564 4.564 6 H 0.064 0.936 7 C -0.178 4.178 8 N -0.553 5.553 9 Si 0.763 3.237 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.289 5.289 14 C 0.020 3.980 15 H 0.065 0.935 16 C -0.140 4.140 17 C -0.108 4.108 18 C -0.053 4.053 19 C -0.222 4.222 20 C 0.110 3.890 21 N -0.409 5.409 22 C -0.246 4.246 23 C -0.067 4.067 24 C -0.193 4.193 25 H 0.080 0.920 26 H 0.063 0.937 27 H 0.047 0.953 28 H 0.045 0.955 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.144 0.856 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.102 0.898 36 H 0.157 0.843 37 H 0.232 0.768 38 H 0.237 0.763 39 H 0.136 0.864 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.783 11.461 -9.722 15.134 hybrid contribution 2.580 0.220 1.057 2.797 sum 0.797 11.682 -8.665 14.566 Atomic orbital electron populations 1.21569 0.96480 0.99896 1.00366 1.21371 0.94366 0.98625 0.99755 1.18930 0.91742 0.91262 0.86446 0.98937 1.21954 0.93428 1.35860 1.05126 0.93639 1.25511 1.01037 0.95375 0.95829 1.69999 1.35941 1.39259 1.10134 0.85895 0.82601 0.77333 0.77867 1.20593 1.21060 1.19928 1.61044 1.45168 1.11808 1.10850 1.21008 0.91828 0.86974 0.98142 0.93493 1.22285 0.96442 1.00295 0.94944 1.21057 0.91611 1.01125 0.97058 1.20653 0.95803 0.94015 0.94779 1.20131 0.95830 1.05474 1.00806 1.17606 0.88974 0.89968 0.92485 1.42289 1.26195 1.49738 1.22672 1.20528 1.01612 1.04284 0.98172 1.20440 0.93238 0.94528 0.98474 1.21137 0.99641 1.02214 0.96281 0.91975 0.93743 0.95350 0.95533 0.92358 0.93204 0.85566 0.90186 0.89353 0.88692 0.89807 0.84285 0.76770 0.76276 0.86447 0.89245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.14 9.85 71.98 0.71 -4.43 16 2 C -0.10 -5.01 5.44 30.59 0.17 -4.84 16 3 C 0.23 11.29 2.04 44.17 0.09 11.38 16 4 H -0.01 -0.41 7.25 -2.39 -0.02 -0.43 16 5 C -0.52 -28.44 6.90 25.60 0.18 -28.26 16 6 H 0.05 2.52 7.38 -2.91 -0.02 2.50 16 7 C 0.02 1.20 5.30 84.65 0.45 1.65 16 8 N -0.91 -52.95 11.30 21.45 0.24 -52.71 16 9 Si 0.94 44.66 29.54 68.60 2.03 46.68 16 10 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 11 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 12 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 13 N -0.66 -27.71 5.43 -473.67 -2.57 -30.28 16 14 C 0.13 4.93 3.15 44.85 0.14 5.07 16 15 H 0.05 1.97 7.40 -2.38 -0.02 1.95 16 16 C -0.10 -2.84 6.77 31.50 0.21 -2.63 16 17 C -0.07 -1.80 6.77 30.52 0.21 -1.59 16 18 C -0.05 -1.60 6.13 -19.60 -0.12 -1.72 16 19 C -0.20 -5.62 9.89 22.43 0.22 -5.40 16 20 C 0.21 6.25 6.75 38.18 0.26 6.50 16 21 N -0.87 -17.36 9.09 -51.44 -0.47 -17.83 16 22 C -0.22 -7.86 9.90 22.37 0.22 -7.64 16 23 C -0.05 -1.94 8.87 22.29 0.20 -1.75 16 24 C -0.19 -7.18 5.26 -19.55 -0.10 -7.28 16 25 H 0.06 2.38 7.59 -2.39 -0.02 2.36 16 26 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.06 3.22 5.98 -2.38 -0.01 3.20 16 30 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 31 H 0.33 14.15 7.86 -89.69 -0.70 13.45 16 32 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.09 2.37 8.09 -2.39 -0.02 2.35 16 34 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 37 H 0.40 6.92 8.84 -92.71 -0.82 6.10 16 38 H 0.41 5.95 8.84 -92.71 -0.82 5.13 16 39 H 0.12 3.84 8.06 -2.91 -0.02 3.81 16 40 H 0.09 4.25 7.58 -2.91 -0.02 4.23 16 Total: -1.00 -62.12 319.77 0.77 -61.35 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: -1.29 Total: 33.72 kcal Atomic # 6 Polarization: -43.76 SS G_CDS: 2.83 Total: -40.93 kcal Atomic # 7 Polarization: -98.03 SS G_CDS: -2.80 Total: -100.83 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -62.12 0.77 -61.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094088812.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.222 kcal (2) G-P(sol) polarization free energy of solvation -62.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds