Wall clock time and date at job start Mon Mar 30 2020 07:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47473 * 2 1 4 4 H 1.08998 * 109.47171 * 303.97669 * 3 2 1 5 5 C 1.50698 * 109.47126 * 183.97319 * 3 2 1 6 6 H 1.07998 * 119.99614 * 239.99881 * 5 3 2 7 7 C 1.37879 * 119.99816 * 60.00572 * 5 3 2 8 8 N 1.31515 * 120.00367 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99716 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47255 * 89.99508 * 9 7 5 11 11 H 1.48494 * 109.46762 * 209.99682 * 9 7 5 12 12 H 1.48503 * 109.46927 * 329.99146 * 9 7 5 13 13 N 1.46898 * 109.46626 * 63.97295 * 3 2 1 14 14 C 1.46898 * 110.99765 * 204.02601 * 13 3 2 15 15 H 1.09001 * 110.34561 * 324.53629 * 14 13 3 16 16 C 1.54337 * 110.30417 * 202.41231 * 14 13 3 17 17 C 1.54343 * 102.39950 * 267.45719 * 16 14 13 18 18 C 1.51382 * 105.16689 * 333.61467 * 17 16 14 19 19 C 1.38379 * 130.31780 * 197.21237 * 18 17 16 20 20 C 1.38776 * 120.15739 * 180.02562 * 19 18 17 21 21 N 1.39669 * 120.11436 * 180.27811 * 20 19 18 22 22 C 1.38936 * 119.77073 * 359.97438 * 20 19 18 23 23 C 1.37960 * 119.86146 * 0.02562 * 22 20 19 24 24 C 1.38285 * 109.75514 * 17.21155 * 18 17 16 25 25 H 1.08994 * 109.47308 * 55.00593 * 1 2 3 26 26 H 1.08996 * 109.47056 * 175.01446 * 1 2 3 27 27 H 1.09004 * 109.46752 * 295.01376 * 1 2 3 28 28 H 1.09007 * 109.46662 * 240.00224 * 2 1 3 29 29 H 1.08997 * 109.47037 * 120.00703 * 2 1 3 30 30 H 0.96993 * 119.99693 * 180.02562 * 8 7 5 31 31 H 1.00901 * 110.99766 * 80.07660 * 13 3 2 32 32 H 1.08999 * 110.82824 * 149.22577 * 16 14 13 33 33 H 1.09004 * 110.98791 * 25.75463 * 16 14 13 34 34 H 1.09005 * 110.30263 * 214.69335 * 17 16 14 35 35 H 1.09001 * 110.30602 * 92.53868 * 17 16 14 36 36 H 1.07997 * 119.92028 * 0.02562 * 19 18 17 37 37 H 0.96994 * 120.00050 * 179.71776 * 21 20 19 38 38 H 0.97005 * 120.00009 * 359.71441 * 21 20 19 39 39 H 1.07998 * 120.06723 * 179.97438 * 22 20 19 40 40 H 1.08002 * 119.83930 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6198 1.9765 -0.8522 5 6 3.5439 1.4436 -0.0984 6 1 4.1359 1.8928 0.6851 7 6 4.1637 0.8711 -1.1890 8 7 3.4427 0.3238 -2.1430 9 14 6.0278 0.8718 -1.3106 10 1 6.5660 -0.3565 -0.6728 11 1 6.4305 0.9047 -2.7395 12 1 6.5687 2.0679 -0.6163 13 7 1.6303 2.1067 1.2446 14 6 1.5769 3.5643 1.0704 15 1 2.3682 3.8948 0.3975 16 6 1.7049 4.2719 2.4360 17 6 0.2307 4.4473 2.8579 18 6 -0.5501 4.4876 1.5616 19 6 -1.8346 4.9331 1.3035 20 6 -2.3484 4.8711 0.0159 21 7 -3.6429 5.3263 -0.2447 22 6 -1.5685 4.3605 -1.0143 23 6 -0.2885 3.9176 -0.7521 24 6 0.2236 3.9800 0.5340 25 1 -0.3633 0.5893 -0.8418 26 1 -0.3633 -1.0237 -0.0893 27 1 -0.3633 0.4346 0.9313 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.8788 -0.0792 -2.9099 31 1 2.2422 1.8557 2.0067 32 1 2.1944 5.2396 2.3267 33 1 2.2406 3.6471 3.1508 34 1 0.1026 5.3809 3.4058 35 1 -0.0914 3.6030 3.4673 36 1 -2.4386 5.3299 2.1060 37 1 -3.9989 5.2861 -1.1461 38 1 -4.1859 5.6828 0.4758 39 1 -1.9637 4.3097 -2.0181 40 1 0.3174 3.5204 -1.5532 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094088814.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:23 Heat of formation + Delta-G solvation = 13.943869 kcal Electronic energy + Delta-G solvation = -19840.548030 eV Core-core repulsion = 17039.935194 eV Total energy + Delta-G solvation = -2800.612836 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.72209 -36.87009 -35.06275 -32.91485 -31.96532 -30.91374 -29.26410 -27.53788 -26.43528 -24.73620 -22.56569 -22.20492 -20.47047 -19.74036 -19.29431 -16.66608 -16.48862 -16.21497 -15.21319 -14.92017 -14.48836 -14.22334 -13.63623 -13.30381 -13.01447 -12.80967 -12.68422 -12.54630 -12.16067 -11.49040 -11.41379 -11.15955 -11.12740 -10.92155 -10.85263 -10.56654 -10.43900 -10.29272 -10.08875 -9.79690 -9.50079 -9.34400 -8.97136 -8.33306 -8.26192 -7.21487 -7.02085 -5.95206 -4.08271 1.88842 2.09162 3.28871 3.36166 3.38528 4.03168 4.30953 4.42495 4.93185 5.14791 5.28577 5.39095 5.43589 5.56880 5.67935 5.84981 5.96152 6.06351 6.11731 6.28295 6.38244 6.44766 6.48637 6.56061 6.60572 6.60731 6.81108 6.82333 6.96339 7.21087 7.27177 7.30901 7.37444 7.53028 7.67684 7.77759 7.83904 7.92255 8.15484 8.22853 8.40936 8.75200 9.06076 9.59284 11.04385 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.023936 B = 0.005916 C = 0.005490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.510643 B = 4731.574260 C = 5098.995240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.105 4.105 3 C 0.216 3.784 4 H 0.036 0.964 5 C -0.544 4.544 6 H 0.053 0.947 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.676 5.676 14 C 0.132 3.868 15 H 0.052 0.948 16 C -0.121 4.121 17 C -0.072 4.072 18 C -0.048 4.048 19 C -0.193 4.193 20 C 0.203 3.797 21 N -0.886 5.886 22 C -0.200 4.200 23 C -0.048 4.048 24 C -0.110 4.110 25 H 0.036 0.964 26 H 0.021 0.979 27 H 0.046 0.954 28 H 0.088 0.912 29 H 0.028 0.972 30 H 0.260 0.740 31 H 0.327 0.673 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.109 0.891 37 H 0.394 0.606 38 H 0.392 0.608 39 H 0.114 0.886 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.915 8.680 5.573 14.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.054 0.946 5 C -0.583 4.583 6 H 0.071 0.929 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.715 3.285 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.306 5.306 14 C 0.022 3.978 15 H 0.070 0.930 16 C -0.159 4.159 17 C -0.109 4.109 18 C -0.049 4.049 19 C -0.215 4.215 20 C 0.101 3.899 21 N -0.426 5.426 22 C -0.222 4.222 23 C -0.067 4.067 24 C -0.112 4.112 25 H 0.055 0.945 26 H 0.040 0.960 27 H 0.065 0.935 28 H 0.107 0.893 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.145 0.855 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.127 0.873 37 H 0.221 0.779 38 H 0.220 0.780 39 H 0.132 0.868 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.500 8.469 5.285 14.488 hybrid contribution 1.580 0.185 -0.389 1.638 sum -8.920 8.654 4.896 13.358 Atomic orbital electron populations 1.21656 0.98946 0.97926 1.00501 1.21487 0.92079 0.99339 1.01472 1.19184 0.92274 0.91030 0.86735 0.94645 1.21907 0.92860 1.37754 1.05826 0.92926 1.24921 0.97792 0.95078 0.95667 1.69881 1.34803 1.38042 1.09629 0.86689 0.86341 0.78344 0.77162 1.20713 1.21272 1.20095 1.60888 1.56473 1.04085 1.09199 1.20679 0.92698 0.90195 0.94223 0.92973 1.22451 0.95729 1.00366 0.97349 1.20952 0.94264 1.01239 0.94463 1.20267 0.92868 0.95940 0.95805 1.19815 0.96356 1.10590 0.94772 1.17510 0.85158 0.93893 0.93363 1.42328 1.14136 1.73649 1.12486 1.20394 0.95540 1.08528 0.97749 1.20507 0.94156 0.95621 0.96394 1.20340 0.97282 1.00852 0.92764 0.94498 0.95990 0.93501 0.89336 0.95294 0.92957 0.85518 0.91513 0.90749 0.91877 0.90239 0.87339 0.77864 0.78042 0.86809 0.86215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 9.73 37.16 0.36 -2.50 16 2 C -0.11 -2.56 5.44 -26.73 -0.15 -2.70 16 3 C 0.22 5.29 1.84 -68.86 -0.13 5.17 16 4 H 0.04 0.96 6.49 -51.93 -0.34 0.62 16 5 C -0.54 -14.53 8.24 -34.44 -0.28 -14.82 16 6 H 0.05 1.39 7.76 -52.49 -0.41 0.99 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 8 N -0.89 -24.99 11.30 55.43 0.63 -24.36 16 9 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.68 -14.16 5.57 -101.07 -0.56 -14.72 16 14 C 0.13 2.53 2.98 -67.82 -0.20 2.33 16 15 H 0.05 1.13 7.67 -51.93 -0.40 0.73 16 16 C -0.12 -1.85 6.73 -25.33 -0.17 -2.02 16 17 C -0.07 -1.03 6.77 -26.84 -0.18 -1.21 16 18 C -0.05 -0.78 6.13 -104.22 -0.64 -1.42 16 19 C -0.19 -2.87 9.89 -39.33 -0.39 -3.26 16 20 C 0.20 2.94 6.75 -83.83 -0.57 2.37 16 21 N -0.89 -9.26 9.09 32.39 0.29 -8.97 16 22 C -0.20 -3.18 9.90 -39.42 -0.39 -3.57 16 23 C -0.05 -0.88 9.60 -39.56 -0.38 -1.26 16 24 C -0.11 -2.04 5.63 -104.14 -0.59 -2.63 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.99 7.87 -51.93 -0.41 0.58 16 28 H 0.09 2.39 5.97 -51.93 -0.31 2.08 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.33 6.70 7.81 -39.29 -0.31 6.39 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 1.07 7.59 -51.93 -0.39 0.68 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.39 3.43 8.84 -40.82 -0.36 3.07 16 38 H 0.39 3.29 8.84 -40.82 -0.36 2.93 16 39 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 40 H 0.12 2.36 7.24 -52.49 -0.38 1.98 16 LS Contribution 321.10 15.07 4.84 4.84 Total: -1.00 -28.83 321.10 -9.80 -38.63 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -6.18 Total: 12.27 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: -3.79 Total: -23.77 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: 0.36 Total: -48.05 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.83 -9.80 -38.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094088814.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.576 kcal (2) G-P(sol) polarization free energy of solvation -28.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds