Wall clock time and date at job start Mon Mar 30 2020 07:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47473 * 2 1 4 4 H 1.08998 * 109.47171 * 303.97669 * 3 2 1 5 5 C 1.50698 * 109.47126 * 183.97319 * 3 2 1 6 6 H 1.07998 * 119.99614 * 239.99881 * 5 3 2 7 7 C 1.37879 * 119.99816 * 60.00572 * 5 3 2 8 8 N 1.31515 * 120.00367 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99716 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47255 * 89.99508 * 9 7 5 11 11 H 1.48494 * 109.46762 * 209.99682 * 9 7 5 12 12 H 1.48503 * 109.46927 * 329.99146 * 9 7 5 13 13 N 1.46898 * 109.46626 * 63.97295 * 3 2 1 14 14 C 1.46898 * 110.99765 * 204.02601 * 13 3 2 15 15 H 1.09001 * 110.34561 * 324.53629 * 14 13 3 16 16 C 1.54337 * 110.30417 * 202.41231 * 14 13 3 17 17 C 1.54343 * 102.39950 * 267.45719 * 16 14 13 18 18 C 1.51382 * 105.16689 * 333.61467 * 17 16 14 19 19 C 1.38379 * 130.31780 * 197.21237 * 18 17 16 20 20 C 1.38776 * 120.15739 * 180.02562 * 19 18 17 21 21 N 1.39669 * 120.11436 * 180.27811 * 20 19 18 22 22 C 1.38936 * 119.77073 * 359.97438 * 20 19 18 23 23 C 1.37960 * 119.86146 * 0.02562 * 22 20 19 24 24 C 1.38285 * 109.75514 * 17.21155 * 18 17 16 25 25 H 1.08994 * 109.47308 * 55.00593 * 1 2 3 26 26 H 1.08996 * 109.47056 * 175.01446 * 1 2 3 27 27 H 1.09004 * 109.46752 * 295.01376 * 1 2 3 28 28 H 1.09007 * 109.46662 * 240.00224 * 2 1 3 29 29 H 1.08997 * 109.47037 * 120.00703 * 2 1 3 30 30 H 0.96993 * 119.99693 * 180.02562 * 8 7 5 31 31 H 1.00901 * 110.99766 * 80.07660 * 13 3 2 32 32 H 1.08999 * 110.82824 * 149.22577 * 16 14 13 33 33 H 1.09004 * 110.98791 * 25.75463 * 16 14 13 34 34 H 1.09005 * 110.30263 * 214.69335 * 17 16 14 35 35 H 1.09001 * 110.30602 * 92.53868 * 17 16 14 36 36 H 1.07997 * 119.92028 * 0.02562 * 19 18 17 37 37 H 0.96994 * 120.00050 * 179.71776 * 21 20 19 38 38 H 0.97005 * 120.00009 * 359.71441 * 21 20 19 39 39 H 1.07998 * 120.06723 * 179.97438 * 22 20 19 40 40 H 1.08002 * 119.83930 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6198 1.9765 -0.8522 5 6 3.5439 1.4436 -0.0984 6 1 4.1359 1.8928 0.6851 7 6 4.1637 0.8711 -1.1890 8 7 3.4427 0.3238 -2.1430 9 14 6.0278 0.8718 -1.3106 10 1 6.5660 -0.3565 -0.6728 11 1 6.4305 0.9047 -2.7395 12 1 6.5687 2.0679 -0.6163 13 7 1.6303 2.1067 1.2446 14 6 1.5769 3.5643 1.0704 15 1 2.3682 3.8948 0.3975 16 6 1.7049 4.2719 2.4360 17 6 0.2307 4.4473 2.8579 18 6 -0.5501 4.4876 1.5616 19 6 -1.8346 4.9331 1.3035 20 6 -2.3484 4.8711 0.0159 21 7 -3.6429 5.3263 -0.2447 22 6 -1.5685 4.3605 -1.0143 23 6 -0.2885 3.9176 -0.7521 24 6 0.2236 3.9800 0.5340 25 1 -0.3633 0.5893 -0.8418 26 1 -0.3633 -1.0237 -0.0893 27 1 -0.3633 0.4346 0.9313 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.8788 -0.0792 -2.9099 31 1 2.2422 1.8557 2.0067 32 1 2.1944 5.2396 2.3267 33 1 2.2406 3.6471 3.1508 34 1 0.1026 5.3809 3.4058 35 1 -0.0914 3.6030 3.4673 36 1 -2.4386 5.3299 2.1060 37 1 -3.9989 5.2861 -1.1461 38 1 -4.1859 5.6828 0.4758 39 1 -1.9637 4.3097 -2.0181 40 1 0.3174 3.5204 -1.5532 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094088814.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:22 Heat of formation + Delta-G solvation = -3.857928 kcal Electronic energy + Delta-G solvation = -19841.319974 eV Core-core repulsion = 17039.935194 eV Total energy + Delta-G solvation = -2801.384780 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.00415 -38.29979 -36.69998 -34.21119 -33.78051 -32.56627 -30.68153 -28.76606 -28.23672 -26.28010 -24.43068 -23.48637 -21.78577 -21.14209 -21.09505 -18.57995 -17.68490 -17.36435 -16.91764 -16.27486 -16.17081 -15.50887 -15.17926 -15.00819 -14.65426 -14.25375 -14.01217 -13.88634 -13.68065 -13.22439 -13.11335 -12.92952 -12.68371 -12.59685 -12.30022 -12.18657 -12.04788 -11.84890 -11.55180 -11.44809 -11.25613 -10.99907 -10.88862 -10.42868 -9.50493 -8.97890 -8.20133 -8.02366 -6.25119 0.63115 0.81731 1.38197 1.39295 1.48352 2.41022 3.02349 3.08170 3.16604 3.68233 3.85858 3.99456 4.25836 4.30052 4.39525 4.58005 4.63226 4.67153 4.75727 4.83050 4.92330 4.95785 5.05492 5.08663 5.22411 5.23283 5.31378 5.36959 5.42011 5.52813 5.56301 5.66729 5.69906 5.82215 6.06003 6.09369 6.15180 6.24701 6.44776 6.71519 6.90519 7.09868 7.12809 7.46557 8.93478 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.023936 B = 0.005916 C = 0.005490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.510643 B = 4731.574260 C = 5098.995240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.101 4.101 3 C 0.226 3.774 4 H 0.001 0.999 5 C -0.557 4.557 6 H 0.050 0.950 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.950 3.050 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.272 1.272 13 N -0.666 5.666 14 C 0.129 3.871 15 H 0.012 0.988 16 C -0.114 4.114 17 C -0.065 4.065 18 C -0.048 4.048 19 C -0.195 4.195 20 C 0.214 3.786 21 N -0.867 5.867 22 C -0.211 4.211 23 C -0.071 4.071 24 C -0.145 4.145 25 H 0.024 0.976 26 H 0.041 0.959 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.028 0.972 30 H 0.261 0.739 31 H 0.329 0.671 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.140 0.860 37 H 0.405 0.595 38 H 0.407 0.593 39 H 0.127 0.873 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.314 9.838 7.528 16.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.140 4.140 3 C 0.117 3.883 4 H 0.019 0.981 5 C -0.597 4.597 6 H 0.068 0.932 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.776 3.224 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.296 5.296 14 C 0.019 3.981 15 H 0.030 0.970 16 C -0.152 4.152 17 C -0.101 4.101 18 C -0.049 4.049 19 C -0.217 4.217 20 C 0.108 3.892 21 N -0.409 5.409 22 C -0.233 4.233 23 C -0.090 4.090 24 C -0.148 4.148 25 H 0.043 0.957 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.147 0.853 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.104 0.896 36 H 0.158 0.842 37 H 0.234 0.766 38 H 0.237 0.763 39 H 0.145 0.855 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.940 9.648 7.250 16.977 hybrid contribution 1.922 -0.117 -1.044 2.191 sum -10.018 9.531 6.206 15.156 Atomic orbital electron populations 1.21475 0.96715 0.99004 1.00243 1.21350 0.94023 0.98719 0.99870 1.18896 0.91076 0.91104 0.87226 0.98097 1.22220 0.94163 1.37435 1.05836 0.93171 1.25667 1.02089 0.94879 0.95423 1.70020 1.36414 1.38728 1.10051 0.85694 0.81181 0.78491 0.77077 1.20007 1.21104 1.19654 1.60829 1.55793 1.05476 1.07514 1.20747 0.92324 0.89041 0.96037 0.97039 1.22436 0.97352 1.00539 0.94865 1.20962 0.92489 1.03075 0.93622 1.20554 0.93365 0.95048 0.95923 1.20149 0.96025 1.09876 0.95681 1.17575 0.86255 0.92480 0.92856 1.42279 1.12591 1.72179 1.13802 1.20502 0.94810 1.08882 0.99139 1.20434 0.95334 0.97305 0.95941 1.20340 0.97573 1.03293 0.93552 0.95714 0.93956 0.92847 0.92278 0.95342 0.93017 0.85301 0.90291 0.89758 0.88722 0.89630 0.84180 0.76621 0.76303 0.85509 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.09 9.73 71.98 0.70 -4.39 16 2 C -0.10 -5.06 5.44 30.60 0.17 -4.89 16 3 C 0.23 11.61 1.84 44.17 0.08 11.69 16 4 H 0.00 0.06 6.49 -2.39 -0.02 0.05 16 5 C -0.56 -30.83 8.24 25.60 0.21 -30.62 16 6 H 0.05 2.73 7.76 -2.91 -0.02 2.71 16 7 C 0.02 1.07 5.30 84.65 0.45 1.52 16 8 N -0.91 -53.48 11.30 21.45 0.24 -53.24 16 9 Si 0.95 44.18 29.54 68.60 2.03 46.21 16 10 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 13 N -0.67 -28.63 5.57 -473.68 -2.64 -31.27 16 14 C 0.13 5.08 2.98 44.84 0.13 5.21 16 15 H 0.01 0.54 7.67 -2.39 -0.02 0.52 16 16 C -0.11 -3.34 6.73 31.50 0.21 -3.13 16 17 C -0.06 -1.66 6.77 30.52 0.21 -1.45 16 18 C -0.05 -1.48 6.13 -19.60 -0.12 -1.60 16 19 C -0.19 -5.20 9.89 22.43 0.22 -4.98 16 20 C 0.21 5.68 6.75 38.19 0.26 5.93 16 21 N -0.87 -15.17 9.09 -51.44 -0.47 -15.64 16 22 C -0.21 -6.70 9.90 22.37 0.22 -6.47 16 23 C -0.07 -2.76 9.60 22.28 0.21 -2.55 16 24 C -0.14 -5.50 5.63 -19.55 -0.11 -5.61 16 25 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.05 2.23 7.87 -2.38 -0.02 2.21 16 28 H 0.06 3.32 5.97 -2.38 -0.01 3.31 16 29 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 31 H 0.33 13.62 7.81 -89.69 -0.70 12.92 16 32 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.08 2.29 7.59 -2.39 -0.02 2.27 16 34 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 35 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 37 H 0.40 5.76 8.84 -92.71 -0.82 4.94 16 38 H 0.41 5.10 8.84 -92.70 -0.82 4.28 16 39 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 40 H 0.09 3.81 7.24 -2.91 -0.02 3.79 16 Total: -1.00 -64.58 321.10 0.72 -63.86 By element: Atomic # 1 Polarization: 32.71 SS G_CDS: -1.28 Total: 31.43 kcal Atomic # 6 Polarization: -44.18 SS G_CDS: 2.84 Total: -41.34 kcal Atomic # 7 Polarization: -97.29 SS G_CDS: -2.86 Total: -100.15 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -64.58 0.72 -63.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094088814.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.998 kcal (2) G-P(sol) polarization free energy of solvation -64.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds