Wall clock time and date at job start Mon Mar 30 2020 07:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47312 * 2 1 4 4 H 1.08998 * 109.46838 * 54.90626 * 3 2 1 5 5 C 1.50691 * 109.47154 * 174.90755 * 3 2 1 6 6 H 1.08005 * 120.00394 * 115.13794 * 5 3 2 7 7 C 1.37870 * 120.00114 * 295.13635 * 5 3 2 8 8 N 1.31519 * 120.00120 * 349.51796 * 7 5 3 9 9 Si 1.86807 * 120.00141 * 169.52282 * 7 5 3 10 10 H 1.48499 * 109.47203 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47175 * 239.99888 * 9 7 5 12 12 H 1.48502 * 109.46942 * 119.99873 * 9 7 5 13 13 N 1.46902 * 109.47004 * 294.90879 * 3 2 1 14 14 C 1.46900 * 111.00000 * 155.20991 * 13 3 2 15 15 H 1.09000 * 110.26689 * 30.35995 * 14 13 3 16 16 C 1.54344 * 110.29996 * 152.43287 * 14 13 3 17 17 C 1.54337 * 102.39913 * 92.54602 * 16 14 13 18 18 C 1.51388 * 105.17071 * 26.37764 * 17 16 14 19 19 C 1.38378 * 130.31733 * 162.79635 * 18 17 16 20 20 C 1.38778 * 120.14981 * 179.97438 * 19 18 17 21 21 N 1.39679 * 120.10858 * 179.97438 * 20 19 18 22 22 C 1.38920 * 119.77995 * 0.02562 * 20 19 18 23 23 C 1.37961 * 119.86123 * 359.97438 * 22 20 19 24 24 C 1.38284 * 109.75409 * 342.79077 * 18 17 16 25 25 H 1.09000 * 109.47205 * 186.19399 * 1 2 3 26 26 H 1.09000 * 109.47228 * 306.19327 * 1 2 3 27 27 H 1.09004 * 109.47456 * 66.19289 * 1 2 3 28 28 H 1.09002 * 109.47138 * 239.99987 * 2 1 3 29 29 H 1.08999 * 109.47175 * 119.99696 * 2 1 3 30 30 H 0.96994 * 119.99598 * 358.64830 * 8 7 5 31 31 H 1.00902 * 111.00068 * 31.25572 * 13 3 2 32 32 H 1.08997 * 110.81445 * 210.77607 * 16 14 13 33 33 H 1.09002 * 110.82101 * 334.12141 * 16 14 13 34 34 H 1.09001 * 110.29790 * 145.29625 * 17 16 14 35 35 H 1.08997 * 110.30595 * 267.35182 * 17 16 14 36 36 H 1.07997 * 119.92507 * 0.02562 * 19 18 17 37 37 H 0.97004 * 119.99859 * 0.02562 * 21 20 19 38 38 H 0.96998 * 120.00328 * 180.02562 * 21 20 19 39 39 H 1.08001 * 120.07435 * 180.02562 * 22 20 19 40 40 H 1.07995 * 119.84594 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6041 1.9820 0.8408 5 6 3.5416 1.4443 0.1261 6 1 4.1512 1.8171 -0.6838 7 6 4.1375 0.9702 1.2754 8 7 3.4054 0.7102 2.3366 9 14 5.9848 0.6972 1.3256 10 1 6.5750 1.0621 0.0126 11 1 6.2663 -0.7320 1.6142 12 1 6.5816 1.5439 2.3896 13 7 1.6533 2.0986 -1.2562 14 6 1.5791 3.5560 -1.0878 15 1 2.2897 3.8852 -0.3296 16 6 1.8606 4.2651 -2.4295 17 6 0.4436 4.4399 -3.0156 18 6 -0.4793 4.4781 -1.8162 19 6 -1.7852 4.9221 -1.7051 20 6 -2.4417 4.8583 -0.4841 21 7 -3.7597 5.3072 -0.3729 22 6 -1.7833 4.3474 0.6273 23 6 -0.4813 3.9059 0.5117 24 6 0.1732 3.9700 -0.7080 25 1 -0.3633 -1.0217 0.1109 26 1 -0.3634 0.6068 0.8293 27 1 -0.3634 0.4148 -0.9402 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.4490 0.8706 2.3170 31 1 0.7805 1.7298 -1.6030 32 1 2.3337 5.2331 -2.2642 33 1 2.4763 3.6401 -3.0763 34 1 0.3777 5.3741 -3.5734 35 1 0.1942 3.5969 -3.6600 36 1 -2.2950 5.3185 -2.5708 37 1 -4.2177 5.6640 -1.1500 38 1 -4.2169 5.2622 0.4814 39 1 -2.2898 4.2951 1.5798 40 1 0.0301 3.5084 1.3758 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094088816.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:25 Heat of formation + Delta-G solvation = 11.481358 kcal Electronic energy + Delta-G solvation = -19874.731903 eV Core-core repulsion = 17074.012284 eV Total energy + Delta-G solvation = -2800.719618 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.95148 -37.08040 -35.41375 -33.01657 -32.07152 -31.10112 -29.34498 -27.59848 -26.22441 -24.80567 -22.81597 -22.33477 -20.51364 -19.91799 -19.69896 -16.84524 -16.67653 -16.35386 -15.48785 -15.12462 -14.35577 -14.16866 -13.73612 -13.66017 -13.14601 -12.88088 -12.81966 -12.47711 -12.39862 -12.07887 -11.54398 -11.34960 -11.14437 -10.93216 -10.68600 -10.59916 -10.50826 -10.40846 -10.04853 -9.93405 -9.84021 -9.61777 -8.61023 -8.47199 -8.27402 -7.46509 -7.03670 -6.23425 -3.92515 1.68095 1.86002 3.50359 3.53106 3.68286 3.87008 4.10084 4.60519 4.81580 5.03994 5.24334 5.30698 5.42938 5.49846 5.59299 5.69082 5.73925 5.95370 6.00165 6.03764 6.06519 6.22223 6.23802 6.32357 6.38813 6.54565 6.56594 6.66252 6.70675 6.78079 6.91366 6.98875 7.10030 7.13846 7.27362 7.47849 7.59550 7.76405 8.14989 8.23593 8.56601 8.79186 9.03071 9.76669 11.11425 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025121 B = 0.005830 C = 0.005379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.354073 B = 4801.661713 C = 5203.735276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.208 3.792 4 H -0.004 1.004 5 C -0.576 4.576 6 H 0.056 0.944 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 1.069 2.931 10 H -0.289 1.289 11 H -0.289 1.289 12 H -0.291 1.291 13 N -0.663 5.663 14 C 0.136 3.864 15 H 0.085 0.915 16 C -0.110 4.110 17 C -0.081 4.081 18 C -0.047 4.047 19 C -0.192 4.192 20 C 0.208 3.792 21 N -0.884 5.884 22 C -0.200 4.200 23 C -0.049 4.049 24 C -0.167 4.167 25 H 0.039 0.961 26 H 0.043 0.957 27 H 0.041 0.959 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.269 0.731 31 H 0.318 0.682 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.394 0.606 38 H 0.395 0.605 39 H 0.116 0.884 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.575 7.984 -7.014 15.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C 0.100 3.900 4 H 0.013 0.987 5 C -0.614 4.614 6 H 0.074 0.926 7 C -0.187 4.187 8 N -0.554 5.554 9 Si 0.899 3.101 10 H -0.215 1.215 11 H -0.215 1.215 12 H -0.218 1.218 13 N -0.292 5.292 14 C 0.025 3.975 15 H 0.103 0.897 16 C -0.148 4.148 17 C -0.118 4.118 18 C -0.048 4.048 19 C -0.215 4.215 20 C 0.105 3.895 21 N -0.424 5.424 22 C -0.223 4.223 23 C -0.068 4.068 24 C -0.171 4.171 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.135 0.865 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.129 0.871 37 H 0.221 0.779 38 H 0.223 0.777 39 H 0.134 0.866 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.593 7.427 -6.300 13.671 hybrid contribution -2.665 0.688 -0.277 2.766 sum -12.258 8.115 -6.578 16.105 Atomic orbital electron populations 1.21868 0.98862 0.99875 1.00183 1.21814 0.91984 1.00723 1.01968 1.19304 0.96109 0.89132 0.85473 0.98691 1.22015 0.90852 1.44855 1.03726 0.92585 1.25721 1.06518 0.94311 0.92114 1.70750 1.08394 1.46860 1.29404 0.83550 0.74801 0.76638 0.75142 1.21498 1.21508 1.21759 1.60880 1.34802 1.01272 1.32265 1.20888 0.90606 0.89774 0.96190 0.89661 1.22314 0.95246 0.99977 0.97234 1.21080 0.94123 1.01504 0.95084 1.20390 0.92933 0.95412 0.96094 1.19887 0.95249 1.10327 0.96006 1.17542 0.84871 0.93459 0.93641 1.42359 1.12342 1.73509 1.14170 1.20425 0.96068 1.08428 0.97348 1.20516 0.93367 0.95997 0.96966 1.21350 0.99261 1.03139 0.93359 0.94195 0.93800 0.94010 0.92996 0.91251 0.92033 0.86468 0.91663 0.89669 0.91493 0.90427 0.87065 0.77878 0.77736 0.86633 0.86382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.62 37.16 0.36 -2.56 16 2 C -0.13 -2.93 5.25 -26.73 -0.14 -3.07 16 3 C 0.21 5.10 1.51 -68.87 -0.10 5.00 16 4 H 0.00 -0.12 6.49 -51.93 -0.34 -0.45 16 5 C -0.58 -16.01 8.46 -34.45 -0.29 -16.30 16 6 H 0.06 1.61 7.84 -52.48 -0.41 1.20 16 7 C 0.02 0.47 5.14 -17.82 -0.09 0.38 16 8 N -0.92 -27.23 12.91 55.43 0.72 -26.52 16 9 Si 1.07 25.51 29.92 -169.99 -5.09 20.42 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 N -0.66 -14.15 6.10 -101.07 -0.62 -14.76 16 14 C 0.14 2.64 2.96 -67.82 -0.20 2.44 16 15 H 0.09 1.90 7.65 -51.93 -0.40 1.51 16 16 C -0.11 -1.76 6.78 -25.33 -0.17 -1.93 16 17 C -0.08 -1.14 6.77 -26.85 -0.18 -1.32 16 18 C -0.05 -0.74 6.13 -104.22 -0.64 -1.38 16 19 C -0.19 -2.71 9.89 -39.33 -0.39 -3.10 16 20 C 0.21 2.83 6.75 -83.83 -0.57 2.26 16 21 N -0.88 -8.56 9.09 32.39 0.29 -8.27 16 22 C -0.20 -3.01 9.90 -39.43 -0.39 -3.40 16 23 C -0.05 -0.86 9.90 -39.56 -0.39 -1.26 16 24 C -0.17 -2.99 5.45 -104.14 -0.57 -3.56 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.04 0.76 6.65 -51.93 -0.35 0.41 16 28 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.07 1.78 6.47 -51.93 -0.34 1.45 16 30 H 0.27 7.95 6.29 -40.82 -0.26 7.69 16 31 H 0.32 6.43 6.25 -39.29 -0.25 6.19 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 1.40 8.08 -51.93 -0.42 0.98 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.39 3.01 8.84 -40.82 -0.36 2.65 16 38 H 0.40 3.15 8.84 -40.82 -0.36 2.78 16 39 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.12 2.21 7.54 -52.49 -0.40 1.81 16 LS Contribution 319.74 15.07 4.82 4.82 Total: -1.00 -30.20 319.74 -9.68 -39.88 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -6.04 Total: 12.20 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: -3.77 Total: -27.77 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: 0.39 Total: -49.55 kcal Atomic # 14 Polarization: 25.51 SS G_CDS: -5.09 Total: 20.42 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.20 -9.68 -39.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094088816.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.362 kcal (2) G-P(sol) polarization free energy of solvation -30.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds