Wall clock time and date at job start Mon Mar 30 2020 07:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47312 * 2 1 4 4 H 1.08998 * 109.46838 * 54.90626 * 3 2 1 5 5 C 1.50691 * 109.47154 * 174.90755 * 3 2 1 6 6 H 1.08005 * 120.00394 * 115.13794 * 5 3 2 7 7 C 1.37870 * 120.00114 * 295.13635 * 5 3 2 8 8 N 1.31519 * 120.00120 * 349.51796 * 7 5 3 9 9 Si 1.86807 * 120.00141 * 169.52282 * 7 5 3 10 10 H 1.48499 * 109.47203 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47175 * 239.99888 * 9 7 5 12 12 H 1.48502 * 109.46942 * 119.99873 * 9 7 5 13 13 N 1.46902 * 109.47004 * 294.90879 * 3 2 1 14 14 C 1.46900 * 111.00000 * 155.20991 * 13 3 2 15 15 H 1.09000 * 110.26689 * 30.35995 * 14 13 3 16 16 C 1.54344 * 110.29996 * 152.43287 * 14 13 3 17 17 C 1.54337 * 102.39913 * 92.54602 * 16 14 13 18 18 C 1.51388 * 105.17071 * 26.37764 * 17 16 14 19 19 C 1.38378 * 130.31733 * 162.79635 * 18 17 16 20 20 C 1.38778 * 120.14981 * 179.97438 * 19 18 17 21 21 N 1.39679 * 120.10858 * 179.97438 * 20 19 18 22 22 C 1.38920 * 119.77995 * 0.02562 * 20 19 18 23 23 C 1.37961 * 119.86123 * 359.97438 * 22 20 19 24 24 C 1.38284 * 109.75409 * 342.79077 * 18 17 16 25 25 H 1.09000 * 109.47205 * 186.19399 * 1 2 3 26 26 H 1.09000 * 109.47228 * 306.19327 * 1 2 3 27 27 H 1.09004 * 109.47456 * 66.19289 * 1 2 3 28 28 H 1.09002 * 109.47138 * 239.99987 * 2 1 3 29 29 H 1.08999 * 109.47175 * 119.99696 * 2 1 3 30 30 H 0.96994 * 119.99598 * 358.64830 * 8 7 5 31 31 H 1.00902 * 111.00068 * 31.25572 * 13 3 2 32 32 H 1.08997 * 110.81445 * 210.77607 * 16 14 13 33 33 H 1.09002 * 110.82101 * 334.12141 * 16 14 13 34 34 H 1.09001 * 110.29790 * 145.29625 * 17 16 14 35 35 H 1.08997 * 110.30595 * 267.35182 * 17 16 14 36 36 H 1.07997 * 119.92507 * 0.02562 * 19 18 17 37 37 H 0.97004 * 119.99859 * 0.02562 * 21 20 19 38 38 H 0.96998 * 120.00328 * 180.02562 * 21 20 19 39 39 H 1.08001 * 120.07435 * 180.02562 * 22 20 19 40 40 H 1.07995 * 119.84594 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6041 1.9820 0.8408 5 6 3.5416 1.4443 0.1261 6 1 4.1512 1.8171 -0.6838 7 6 4.1375 0.9702 1.2754 8 7 3.4054 0.7102 2.3366 9 14 5.9848 0.6972 1.3256 10 1 6.5750 1.0621 0.0126 11 1 6.2663 -0.7320 1.6142 12 1 6.5816 1.5439 2.3896 13 7 1.6533 2.0986 -1.2562 14 6 1.5791 3.5560 -1.0878 15 1 2.2897 3.8852 -0.3296 16 6 1.8606 4.2651 -2.4295 17 6 0.4436 4.4399 -3.0156 18 6 -0.4793 4.4781 -1.8162 19 6 -1.7852 4.9221 -1.7051 20 6 -2.4417 4.8583 -0.4841 21 7 -3.7597 5.3072 -0.3729 22 6 -1.7833 4.3474 0.6273 23 6 -0.4813 3.9059 0.5117 24 6 0.1732 3.9700 -0.7080 25 1 -0.3633 -1.0217 0.1109 26 1 -0.3634 0.6068 0.8293 27 1 -0.3634 0.4148 -0.9402 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.4490 0.8706 2.3170 31 1 0.7805 1.7298 -1.6030 32 1 2.3337 5.2331 -2.2642 33 1 2.4763 3.6401 -3.0763 34 1 0.3777 5.3741 -3.5734 35 1 0.1942 3.5969 -3.6600 36 1 -2.2950 5.3185 -2.5708 37 1 -4.2177 5.6640 -1.1500 38 1 -4.2169 5.2622 0.4814 39 1 -2.2898 4.2951 1.5798 40 1 0.0301 3.5084 1.3758 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094088816.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:24 Heat of formation + Delta-G solvation = -7.913181 kcal Electronic energy + Delta-G solvation = -19875.572913 eV Core-core repulsion = 17074.012284 eV Total energy + Delta-G solvation = -2801.560629 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.21950 -38.54283 -36.99476 -34.26939 -33.91588 -32.67511 -30.71632 -28.81147 -27.98546 -26.40032 -24.73571 -23.57204 -21.80999 -21.59288 -21.20132 -18.76825 -17.84218 -17.51025 -16.92017 -16.68473 -15.71060 -15.64160 -15.55811 -15.12441 -14.50951 -14.38574 -14.18011 -14.02103 -13.84215 -13.65181 -13.19973 -12.81340 -12.72903 -12.54137 -12.40200 -12.23204 -12.04996 -11.92192 -11.72723 -11.71005 -11.31305 -11.10786 -10.63265 -10.44073 -9.64697 -9.11350 -8.53346 -8.27623 -6.21212 0.48517 0.63719 1.53464 1.61861 1.79621 2.59696 2.88528 2.97162 3.22708 3.55890 3.67782 3.84885 4.13492 4.24413 4.30983 4.33750 4.35464 4.43894 4.48477 4.53438 4.78427 4.84962 4.90313 4.91777 5.05995 5.07354 5.13748 5.16385 5.25466 5.30105 5.36357 5.40671 5.51245 5.62267 5.87957 5.94871 6.09881 6.20985 6.58169 6.60610 6.63783 7.00429 7.03637 7.55771 8.82741 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025121 B = 0.005830 C = 0.005379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.354073 B = 4801.661713 C = 5203.735276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.119 4.119 3 C 0.215 3.785 4 H -0.036 1.036 5 C -0.586 4.586 6 H 0.041 0.959 7 C -0.031 4.031 8 N -0.938 5.938 9 Si 1.114 2.886 10 H -0.275 1.275 11 H -0.279 1.279 12 H -0.284 1.284 13 N -0.661 5.661 14 C 0.133 3.867 15 H 0.038 0.962 16 C -0.105 4.105 17 C -0.071 4.071 18 C -0.044 4.044 19 C -0.192 4.192 20 C 0.220 3.780 21 N -0.865 5.865 22 C -0.209 4.209 23 C -0.069 4.069 24 C -0.199 4.199 25 H 0.062 0.938 26 H 0.034 0.966 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.038 0.962 30 H 0.256 0.744 31 H 0.325 0.675 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.144 0.856 37 H 0.409 0.591 38 H 0.406 0.594 39 H 0.130 0.870 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.497 8.955 -9.097 18.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.158 4.158 3 C 0.106 3.894 4 H -0.019 1.019 5 C -0.625 4.625 6 H 0.060 0.940 7 C -0.228 4.228 8 N -0.576 5.576 9 Si 0.938 3.062 10 H -0.200 1.200 11 H -0.205 1.205 12 H -0.210 1.210 13 N -0.291 5.291 14 C 0.022 3.978 15 H 0.056 0.944 16 C -0.143 4.143 17 C -0.108 4.108 18 C -0.045 4.045 19 C -0.215 4.215 20 C 0.114 3.886 21 N -0.405 5.405 22 C -0.231 4.231 23 C -0.089 4.089 24 C -0.202 4.202 25 H 0.081 0.919 26 H 0.053 0.947 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.144 0.856 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.116 0.884 35 H 0.106 0.894 36 H 0.162 0.838 37 H 0.239 0.761 38 H 0.235 0.765 39 H 0.148 0.852 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.576 8.426 -8.400 16.600 hybrid contribution -2.172 0.474 0.389 2.257 sum -13.748 8.901 -8.011 18.232 Atomic orbital electron populations 1.21712 0.95649 1.01331 1.00679 1.21636 0.94838 0.99058 1.00251 1.19057 0.94367 0.89990 0.85939 1.01869 1.22296 0.92666 1.44357 1.03181 0.94039 1.27057 1.10249 0.93769 0.91761 1.70860 1.07897 1.48605 1.30235 0.82965 0.70265 0.77077 0.75929 1.20027 1.20523 1.21036 1.60819 1.35355 1.02612 1.30302 1.20863 0.91141 0.88697 0.97051 0.94402 1.22264 0.97182 0.99754 0.95058 1.21052 0.91642 1.03502 0.94582 1.20578 0.93744 0.94638 0.95561 1.20197 0.94592 1.09534 0.97148 1.17601 0.86122 0.91926 0.92915 1.42324 1.10734 1.71929 1.15551 1.20532 0.95136 1.08587 0.98870 1.20430 0.94766 0.97538 0.96147 1.21141 0.98543 1.05960 0.94592 0.91852 0.94661 0.92405 0.93151 0.94308 0.93365 0.85639 0.90702 0.90143 0.88401 0.89392 0.83835 0.76139 0.76463 0.85171 0.89589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.29 9.62 71.98 0.69 -4.59 16 2 C -0.12 -5.71 5.25 30.59 0.16 -5.55 16 3 C 0.22 11.16 1.51 44.17 0.07 11.22 16 4 H -0.04 -2.08 6.49 -2.39 -0.02 -2.10 16 5 C -0.59 -34.12 8.46 25.60 0.22 -33.91 16 6 H 0.04 2.48 7.84 -2.91 -0.02 2.45 16 7 C -0.03 -1.79 5.14 84.65 0.43 -1.35 16 8 N -0.94 -58.13 12.91 21.45 0.28 -57.85 16 9 Si 1.11 52.39 29.92 68.60 2.05 54.44 16 10 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 13 N -0.66 -29.19 6.10 -473.67 -2.89 -32.08 16 14 C 0.13 5.39 2.96 44.85 0.13 5.52 16 15 H 0.04 1.84 7.65 -2.39 -0.02 1.82 16 16 C -0.10 -3.31 6.78 31.50 0.21 -3.10 16 17 C -0.07 -1.80 6.77 30.52 0.21 -1.59 16 18 C -0.04 -1.28 6.13 -19.60 -0.12 -1.40 16 19 C -0.19 -4.72 9.89 22.43 0.22 -4.50 16 20 C 0.22 5.34 6.75 38.18 0.26 5.60 16 21 N -0.86 -13.28 9.09 -51.44 -0.47 -13.75 16 22 C -0.21 -6.11 9.90 22.37 0.22 -5.89 16 23 C -0.07 -2.54 9.90 22.28 0.22 -2.32 16 24 C -0.20 -7.23 5.45 -19.55 -0.11 -7.34 16 25 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.03 1.40 8.14 -2.39 -0.02 1.39 16 27 H 0.06 2.04 6.65 -2.39 -0.02 2.03 16 28 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.04 2.07 6.47 -2.39 -0.02 2.06 16 30 H 0.26 16.13 6.29 -92.71 -0.58 15.55 16 31 H 0.33 13.27 6.25 -89.69 -0.56 12.71 16 32 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.08 2.60 8.08 -2.39 -0.02 2.58 16 34 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 37 H 0.41 4.31 8.84 -92.71 -0.82 3.49 16 38 H 0.41 4.94 8.84 -92.71 -0.82 4.12 16 39 H 0.13 3.30 8.06 -2.91 -0.02 3.27 16 40 H 0.09 3.59 7.54 -2.91 -0.02 3.57 16 Total: -1.00 -68.84 319.74 0.84 -68.00 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: -0.95 Total: 30.45 kcal Atomic # 6 Polarization: -52.02 SS G_CDS: 2.82 Total: -49.21 kcal Atomic # 7 Polarization: -100.60 SS G_CDS: -3.08 Total: -103.68 kcal Atomic # 14 Polarization: 52.39 SS G_CDS: 2.05 Total: 54.44 kcal Total: -68.84 0.84 -68.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094088816.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.090 kcal (2) G-P(sol) polarization free energy of solvation -68.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds