Wall clock time and date at job start Mon Mar 30 2020 06:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48501 * 109.46755 * 269.99801 * 3 2 1 5 5 H 1.48495 * 109.46931 * 29.99815 * 3 2 1 6 6 H 1.48500 * 109.46738 * 150.00057 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46623 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.46626 * 179.97438 * 11 10 9 13 13 C 1.47164 * 110.99478 * 170.00158 * 12 11 10 14 14 C 1.52883 * 108.50660 * 52.12216 * 13 12 11 15 15 C 1.50747 * 109.97290 * 50.42243 * 14 13 12 16 16 C 1.38747 * 118.41477 * 163.09448 * 15 14 13 17 17 C 1.37880 * 120.45841 * 179.83177 * 16 15 14 18 18 C 1.38934 * 119.75411 * 359.97438 * 17 16 15 19 19 N 1.39676 * 120.15398 * 180.02562 * 18 17 16 20 20 C 1.38692 * 119.70024 * 0.07813 * 18 17 16 21 21 C 1.37906 * 121.62332 * 343.02894 * 15 14 13 22 22 C 1.46622 * 111.00339 * 292.97303 * 12 11 10 23 23 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 25 25 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 26 26 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 27 27 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 28 28 H 1.08993 * 109.46955 * 300.00075 * 11 10 9 29 29 H 1.09000 * 109.47050 * 59.99904 * 11 10 9 30 30 H 1.09000 * 109.62963 * 171.82525 * 13 12 11 31 31 H 1.09001 * 109.63349 * 292.41061 * 13 12 11 32 32 H 1.09004 * 109.38861 * 170.57848 * 14 13 12 33 33 H 1.08998 * 109.38653 * 290.37103 * 14 13 12 34 34 H 1.08002 * 119.76929 * 359.81098 * 16 15 14 35 35 H 1.08003 * 120.12342 * 179.97438 * 17 16 15 36 36 H 0.97000 * 119.99547 * 359.97438 * 19 18 17 37 37 H 0.96991 * 120.00186 * 179.97438 * 19 18 17 38 38 H 1.08007 * 119.83282 * 180.02562 * 20 18 17 39 39 H 1.09003 * 109.27040 * 49.42060 * 22 12 11 40 40 H 1.08997 * 109.27344 * 168.89446 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0046 12 7 2.4348 -6.1037 0.0050 13 6 1.7493 -7.3835 0.2452 14 6 0.5926 -7.5082 -0.7467 15 6 1.0831 -7.2373 -2.1462 16 6 0.2926 -7.6410 -3.2126 17 6 0.6987 -7.4114 -4.5100 18 6 1.9078 -6.7707 -4.7509 19 7 2.3271 -6.5333 -6.0619 20 6 2.6970 -6.3688 -3.6836 21 6 2.2851 -6.6034 -2.3812 22 6 3.1815 -6.1571 -1.2558 23 1 -0.4851 0.8400 -0.0004 24 1 0.6240 -2.5576 -0.8880 25 1 0.6247 -2.5563 0.8920 26 1 2.8719 -3.6036 0.8927 27 1 2.8719 -3.6052 -0.8873 28 1 0.8539 -5.0438 0.8948 29 1 0.8532 -5.0459 -0.8851 30 1 2.4484 -8.2067 0.0979 31 1 1.3621 -7.4060 1.2639 32 1 0.1799 -8.5158 -0.6966 33 1 -0.1830 -6.7864 -0.4907 34 1 -0.6473 -8.1390 -3.0250 35 1 0.0793 -7.7284 -5.3361 36 1 1.7739 -6.8163 -6.8067 37 1 3.1713 -6.0856 -6.2275 38 1 3.6371 -5.8702 -3.8684 39 1 3.5767 -5.1668 -1.4821 40 1 4.0089 -6.8594 -1.1544 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094792239.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:20 Heat of formation + Delta-G solvation = 11.874160 kcal Electronic energy + Delta-G solvation = -19310.267819 eV Core-core repulsion = 16509.565234 eV Total energy + Delta-G solvation = -2800.702585 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.30116 -37.71502 -34.57230 -33.51500 -32.18992 -31.60273 -29.82544 -27.89975 -26.82460 -24.39786 -23.12310 -22.28911 -21.92609 -20.24759 -18.79298 -16.95591 -16.70003 -16.24292 -15.48297 -15.14483 -14.89950 -14.60951 -14.33163 -13.85241 -13.69643 -13.34340 -13.14060 -12.46326 -12.32526 -12.22015 -11.88701 -11.75103 -11.26817 -11.24126 -10.99726 -10.77915 -10.68253 -10.46116 -10.32928 -10.09427 -9.51884 -9.25203 -8.98473 -8.58263 -8.27897 -7.98984 -7.38904 -5.93459 -3.95100 1.51140 1.68832 3.35773 3.41671 3.45663 3.82684 3.92239 4.29717 4.52445 4.87168 4.93337 5.07917 5.18963 5.29423 5.41999 5.42929 5.49986 5.65747 5.75569 5.84813 5.87358 5.98702 6.04532 6.10587 6.15889 6.17880 6.38088 6.46311 6.51496 6.79493 6.81084 6.88147 6.99208 7.22042 7.42399 7.47759 7.50974 7.70776 7.76405 7.92804 8.07904 8.51383 9.12229 9.68384 11.18092 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019733 B = 0.004875 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.595187 B = 5741.873468 C = 6449.266945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.890 3.110 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.104 4.104 11 C 0.050 3.950 12 N -0.526 5.526 13 C 0.052 3.948 14 C -0.110 4.110 15 C -0.133 4.133 16 C -0.071 4.071 17 C -0.200 4.200 18 C 0.211 3.789 19 N -0.882 5.882 20 C -0.192 4.192 21 C -0.054 4.054 22 C 0.084 3.916 23 H 0.259 0.741 24 H 0.013 0.987 25 H 0.015 0.985 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.068 0.932 29 H 0.038 0.962 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.395 0.605 37 H 0.397 0.603 38 H 0.119 0.881 39 H 0.094 0.906 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.101 -17.763 -7.939 19.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.554 4.554 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.142 4.142 11 C -0.077 4.077 12 N -0.247 5.247 13 C -0.076 4.076 14 C -0.149 4.149 15 C -0.135 4.135 16 C -0.090 4.090 17 C -0.223 4.223 18 C 0.107 3.893 19 N -0.421 5.421 20 C -0.215 4.215 21 C -0.057 4.057 22 C -0.044 4.044 23 H 0.069 0.931 24 H 0.031 0.969 25 H 0.033 0.967 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.056 0.944 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.223 0.777 37 H 0.225 0.775 38 H 0.137 0.863 39 H 0.112 0.888 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.282 -17.564 -7.462 19.364 hybrid contribution -0.205 0.934 -1.271 1.590 sum 3.077 -16.631 -8.733 19.034 Atomic orbital electron populations 1.69970 1.06046 1.26444 1.51201 1.25023 0.94823 0.99180 0.95490 0.86618 0.79907 0.83612 0.78016 1.20777 1.21264 1.19847 1.21263 0.93015 0.91081 1.50077 0.92729 1.19059 0.94050 0.91388 0.97013 1.21649 0.99125 0.92905 1.00526 1.22351 0.94054 0.90753 1.00513 1.62733 1.27487 1.03271 1.31240 1.22205 0.94612 0.92316 0.98481 1.21012 0.99638 1.01858 0.92382 1.19293 0.95643 1.03475 0.95078 1.20776 0.98430 0.98094 0.91698 1.20453 0.97162 1.07496 0.97164 1.17679 0.92988 0.93521 0.85080 1.42418 1.26384 1.69219 1.04066 1.20467 1.01541 1.08222 0.91266 1.20173 0.95042 0.95450 0.95003 1.21239 0.95174 1.02376 0.85603 0.93114 0.96891 0.96671 0.92728 0.93593 0.91389 0.94376 0.91035 0.90359 0.91127 0.90606 0.86500 0.86655 0.77745 0.77546 0.86335 0.88774 0.89881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -15.04 9.11 -34.44 -0.31 -15.36 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.10 -2.26 5.12 -26.73 -0.14 -2.39 16 11 C 0.05 0.92 3.92 -3.82 -0.01 0.91 16 12 N -0.53 -8.22 5.02 -236.19 -1.18 -9.41 16 13 C 0.05 0.67 6.02 -3.74 -0.02 0.65 16 14 C -0.11 -1.41 5.16 -27.92 -0.14 -1.55 16 15 C -0.13 -1.88 5.06 -104.53 -0.53 -2.41 16 16 C -0.07 -0.93 9.64 -39.52 -0.38 -1.31 16 17 C -0.20 -2.50 9.90 -39.45 -0.39 -2.89 16 18 C 0.21 2.67 6.75 -83.86 -0.57 2.10 16 19 N -0.88 -8.22 9.09 32.37 0.29 -7.92 16 20 C -0.19 -2.64 9.49 -39.28 -0.37 -3.01 16 21 C -0.05 -0.80 5.19 -104.64 -0.54 -1.34 16 22 C 0.08 1.23 5.43 -5.16 -0.03 1.21 16 23 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.05 0.98 6.38 -51.93 -0.33 0.65 16 28 H 0.07 1.24 8.08 -51.93 -0.42 0.82 16 29 H 0.04 0.74 5.90 -51.93 -0.31 0.43 16 30 H 0.07 0.84 8.05 -51.93 -0.42 0.42 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.05 7.05 -51.93 -0.37 0.68 16 34 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 36 H 0.39 2.88 8.84 -40.82 -0.36 2.52 16 37 H 0.40 3.12 8.84 -40.82 -0.36 2.76 16 38 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 39 H 0.09 1.47 6.08 -51.93 -0.32 1.16 16 40 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 317.80 15.07 4.79 4.79 Total: -1.00 -32.16 317.80 -10.29 -42.45 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.23 Total: 3.27 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -3.68 Total: -23.40 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: -0.15 Total: -44.21 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.16 -10.29 -42.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094792239.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.326 kcal (2) G-P(sol) polarization free energy of solvation -32.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds