Wall clock time and date at job start Mon Mar 30 2020 06:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48501 * 109.46755 * 269.99801 * 3 2 1 5 5 H 1.48495 * 109.46931 * 29.99815 * 3 2 1 6 6 H 1.48500 * 109.46738 * 150.00057 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46623 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.46626 * 179.97438 * 11 10 9 13 13 C 1.47164 * 110.99478 * 170.00158 * 12 11 10 14 14 C 1.52883 * 108.50660 * 52.12216 * 13 12 11 15 15 C 1.50747 * 109.97290 * 50.42243 * 14 13 12 16 16 C 1.38747 * 118.41477 * 163.09448 * 15 14 13 17 17 C 1.37880 * 120.45841 * 179.83177 * 16 15 14 18 18 C 1.38934 * 119.75411 * 359.97438 * 17 16 15 19 19 N 1.39676 * 120.15398 * 180.02562 * 18 17 16 20 20 C 1.38692 * 119.70024 * 0.07813 * 18 17 16 21 21 C 1.37906 * 121.62332 * 343.02894 * 15 14 13 22 22 C 1.46622 * 111.00339 * 292.97303 * 12 11 10 23 23 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 25 25 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 26 26 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 27 27 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 28 28 H 1.08993 * 109.46955 * 300.00075 * 11 10 9 29 29 H 1.09000 * 109.47050 * 59.99904 * 11 10 9 30 30 H 1.09000 * 109.62963 * 171.82525 * 13 12 11 31 31 H 1.09001 * 109.63349 * 292.41061 * 13 12 11 32 32 H 1.09004 * 109.38861 * 170.57848 * 14 13 12 33 33 H 1.08998 * 109.38653 * 290.37103 * 14 13 12 34 34 H 1.08002 * 119.76929 * 359.81098 * 16 15 14 35 35 H 1.08003 * 120.12342 * 179.97438 * 17 16 15 36 36 H 0.97000 * 119.99547 * 359.97438 * 19 18 17 37 37 H 0.96991 * 120.00186 * 179.97438 * 19 18 17 38 38 H 1.08007 * 119.83282 * 180.02562 * 20 18 17 39 39 H 1.09003 * 109.27040 * 49.42060 * 22 12 11 40 40 H 1.08997 * 109.27344 * 168.89446 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0046 12 7 2.4348 -6.1037 0.0050 13 6 1.7493 -7.3835 0.2452 14 6 0.5926 -7.5082 -0.7467 15 6 1.0831 -7.2373 -2.1462 16 6 0.2926 -7.6410 -3.2126 17 6 0.6987 -7.4114 -4.5100 18 6 1.9078 -6.7707 -4.7509 19 7 2.3271 -6.5333 -6.0619 20 6 2.6970 -6.3688 -3.6836 21 6 2.2851 -6.6034 -2.3812 22 6 3.1815 -6.1571 -1.2558 23 1 -0.4851 0.8400 -0.0004 24 1 0.6240 -2.5576 -0.8880 25 1 0.6247 -2.5563 0.8920 26 1 2.8719 -3.6036 0.8927 27 1 2.8719 -3.6052 -0.8873 28 1 0.8539 -5.0438 0.8948 29 1 0.8532 -5.0459 -0.8851 30 1 2.4484 -8.2067 0.0979 31 1 1.3621 -7.4060 1.2639 32 1 0.1799 -8.5158 -0.6966 33 1 -0.1830 -6.7864 -0.4907 34 1 -0.6473 -8.1390 -3.0250 35 1 0.0793 -7.7284 -5.3361 36 1 1.7739 -6.8163 -6.8067 37 1 3.1713 -6.0856 -6.2275 38 1 3.6371 -5.8702 -3.8684 39 1 3.5767 -5.1668 -1.4821 40 1 4.0089 -6.8594 -1.1544 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094792239.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:19 Heat of formation + Delta-G solvation = -9.072168 kcal Electronic energy + Delta-G solvation = -19311.176120 eV Core-core repulsion = 16509.565234 eV Total energy + Delta-G solvation = -2801.610886 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.36525 -38.81180 -36.07359 -35.06882 -33.48651 -33.14924 -31.07826 -28.89935 -28.59097 -25.92385 -24.50010 -23.34675 -23.15692 -21.99177 -19.98756 -18.43403 -17.85092 -17.63904 -16.75064 -16.45823 -16.43971 -15.92723 -15.73847 -15.08374 -14.79216 -14.53233 -14.29342 -14.19652 -13.69196 -13.56109 -13.35011 -12.97154 -12.87238 -12.62770 -12.59161 -12.43292 -12.20401 -12.02034 -11.63745 -11.37046 -11.33001 -11.06683 -11.00580 -10.54398 -9.60857 -9.23016 -8.30295 -8.19174 -6.30348 0.50226 0.68928 1.39605 1.41509 1.52979 2.41481 2.90509 3.03665 3.09003 3.13705 3.86942 3.91283 4.10685 4.14447 4.21477 4.28831 4.41783 4.47125 4.60109 4.66809 4.77006 4.78531 4.87398 4.98096 5.01092 5.04490 5.09284 5.13232 5.20097 5.27118 5.41501 5.52408 5.53790 5.75854 5.81041 5.86661 6.02384 6.14149 6.21328 6.29159 6.62532 6.86284 7.02245 7.38723 8.92992 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019733 B = 0.004875 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.595187 B = 5741.873468 C = 6449.266945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.541 4.541 8 H 0.059 0.941 9 C 0.028 3.972 10 C -0.089 4.089 11 C 0.068 3.932 12 N -0.531 5.531 13 C 0.052 3.948 14 C -0.106 4.106 15 C -0.154 4.154 16 C -0.078 4.078 17 C -0.208 4.208 18 C 0.206 3.794 19 N -0.870 5.870 20 C -0.212 4.212 21 C -0.072 4.072 22 C 0.086 3.914 23 H 0.263 0.737 24 H -0.016 1.016 25 H -0.008 1.008 26 H 0.053 0.947 27 H 0.046 0.954 28 H 0.066 0.934 29 H 0.025 0.975 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.406 0.594 37 H 0.404 0.596 38 H 0.125 0.875 39 H 0.078 0.922 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.947 -18.376 -8.568 20.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.579 4.579 8 H 0.077 0.923 9 C -0.009 4.009 10 C -0.127 4.127 11 C -0.060 4.060 12 N -0.252 5.252 13 C -0.075 4.075 14 C -0.144 4.144 15 C -0.156 4.156 16 C -0.097 4.097 17 C -0.231 4.231 18 C 0.101 3.899 19 N -0.411 5.411 20 C -0.235 4.235 21 C -0.074 4.074 22 C -0.042 4.042 23 H 0.072 0.928 24 H 0.003 0.997 25 H 0.010 0.990 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.043 0.957 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.078 0.922 34 H 0.153 0.847 35 H 0.155 0.845 36 H 0.236 0.764 37 H 0.233 0.767 38 H 0.143 0.857 39 H 0.096 0.904 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.145 -18.197 -8.118 20.353 hybrid contribution -0.491 1.082 -1.139 1.646 sum 3.653 -17.115 -9.258 19.799 Atomic orbital electron populations 1.70106 1.07854 1.27740 1.51799 1.25999 0.95774 1.03399 0.94700 0.85438 0.78731 0.78343 0.78495 1.19793 1.20582 1.18632 1.21683 0.93489 0.92350 1.50404 0.92278 1.18939 0.94354 0.93212 0.94420 1.21401 0.97954 0.92929 1.00415 1.21996 0.93813 0.90399 0.99815 1.62676 1.26902 1.03642 1.31952 1.22315 0.94995 0.91165 0.99075 1.20979 0.99046 1.02731 0.91675 1.19528 0.95879 1.04184 0.96052 1.21071 0.98990 0.97887 0.91745 1.20779 0.97361 1.07169 0.97787 1.17836 0.92974 0.93067 0.86023 1.42397 1.26805 1.68552 1.03299 1.20643 1.02308 1.09025 0.91529 1.20258 0.95585 0.96252 0.95296 1.21221 0.95591 1.02007 0.85374 0.92790 0.99747 0.98994 0.92818 0.93514 0.91518 0.95712 0.89301 0.89412 0.88759 0.92201 0.84656 0.84478 0.76421 0.76670 0.85732 0.90413 0.87998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.52 13.29 21.45 0.28 -58.24 16 2 C 0.00 -0.08 5.46 84.65 0.46 0.39 16 3 Si 0.97 45.35 29.54 68.60 2.03 47.37 16 4 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.54 -32.06 9.11 25.60 0.23 -31.82 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.03 1.58 4.97 29.85 0.15 1.73 16 10 C -0.09 -3.95 5.12 30.60 0.16 -3.79 16 11 C 0.07 2.52 3.92 86.31 0.34 2.86 16 12 N -0.53 -16.24 5.02 -901.18 -4.52 -20.76 16 13 C 0.05 1.27 6.02 86.21 0.52 1.79 16 14 C -0.11 -2.59 5.16 29.82 0.15 -2.43 16 15 C -0.15 -4.24 5.06 -19.81 -0.10 -4.34 16 16 C -0.08 -1.94 9.64 22.31 0.22 -1.72 16 17 C -0.21 -4.87 9.90 22.35 0.22 -4.65 16 18 C 0.21 4.97 6.75 38.17 0.26 5.23 16 19 N -0.87 -14.77 9.09 -51.49 -0.47 -15.23 16 20 C -0.21 -5.72 9.49 22.47 0.21 -5.51 16 21 C -0.07 -2.07 5.19 -19.88 -0.10 -2.17 16 22 C 0.09 2.48 5.43 85.59 0.46 2.94 16 23 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 24 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 25 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 26 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.05 2.04 6.38 -2.39 -0.02 2.03 16 28 H 0.07 2.47 8.08 -2.39 -0.02 2.45 16 29 H 0.02 0.99 5.90 -2.39 -0.01 0.97 16 30 H 0.09 1.88 8.05 -2.39 -0.02 1.86 16 31 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 33 H 0.06 1.64 7.05 -2.39 -0.02 1.63 16 34 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 35 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 36 H 0.41 5.08 8.84 -92.71 -0.82 4.26 16 37 H 0.40 5.73 8.84 -92.72 -0.82 4.91 16 38 H 0.12 3.05 8.06 -2.91 -0.02 3.02 16 39 H 0.08 2.46 6.08 -2.39 -0.01 2.44 16 40 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -69.25 317.80 -0.10 -69.34 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -0.60 Total: 19.03 kcal Atomic # 6 Polarization: -44.69 SS G_CDS: 3.18 Total: -41.51 kcal Atomic # 7 Polarization: -89.53 SS G_CDS: -4.70 Total: -94.23 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -69.25 -0.10 -69.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094792239.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.268 kcal (2) G-P(sol) polarization free energy of solvation -69.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds