Wall clock time and date at job start Mon Mar 30 2020 06:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 C 1.50710 * 109.46737 * 174.99856 * 4 2 1 6 6 C 1.38403 * 119.82405 * 269.72404 * 5 4 2 7 7 C 1.37893 * 120.16734 * 179.76675 * 6 5 4 8 8 C 1.39850 * 119.82393 * 0.48492 * 7 6 5 9 9 C 1.47167 * 120.16891 * 179.78772 * 8 7 6 10 10 O 1.21256 * 120.00099 * 179.97438 * 9 8 7 11 11 C 1.50700 * 120.00212 * 359.97438 * 9 8 7 12 12 H 1.09004 * 109.47137 * 330.00183 * 11 9 8 13 13 C 1.53005 * 109.47271 * 89.99567 * 11 9 8 14 14 C 1.50699 * 109.47279 * 209.99766 * 11 9 8 15 15 H 1.07998 * 120.00028 * 0.02562 * 14 11 9 16 16 C 1.37877 * 119.99857 * 180.02562 * 14 11 9 17 17 N 1.31512 * 120.00064 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 120.00050 * 180.02562 * 16 14 11 19 19 H 1.48506 * 109.46696 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47350 * 119.99799 * 18 16 14 21 21 H 1.48499 * 109.46968 * 240.00079 * 18 16 14 22 22 C 1.39853 * 119.65969 * 359.77261 * 8 7 6 23 23 C 1.37889 * 119.82289 * 359.97438 * 22 8 7 24 24 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 27 27 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 28 28 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 30 30 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 31 31 H 1.08997 * 109.47756 * 294.99575 * 4 2 1 32 32 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 33 33 H 1.08001 * 119.91762 * 0.02562 * 6 5 4 34 34 H 1.08000 * 120.08092 * 180.23717 * 7 6 5 35 35 H 1.08998 * 109.46576 * 59.99801 * 13 11 9 36 36 H 1.08991 * 109.47450 * 180.02562 * 13 11 9 37 37 H 1.08997 * 109.46980 * 300.00377 * 13 11 9 38 38 H 0.97003 * 119.99827 * 180.02562 * 17 16 14 39 39 H 1.07996 * 120.08403 * 179.97438 * 22 8 7 40 40 H 1.07994 * 119.91088 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.8294 1.1889 6 6 4.1292 -1.9349 0.5986 7 6 5.5028 -2.0389 0.5352 8 6 6.3026 -1.0285 1.0785 9 6 7.7693 -1.1339 1.0192 10 8 8.4598 -0.2558 1.4907 11 6 8.4130 -2.3332 0.3724 12 1 7.7643 -3.2013 0.4898 13 6 8.6286 -2.0554 -1.1167 14 6 9.7412 -2.6062 1.0300 15 1 10.0847 -1.9746 1.8359 16 6 10.5180 -3.6621 0.6026 17 7 10.0995 -4.4315 -0.3785 18 14 12.1641 -4.0009 1.4181 19 1 12.4021 -2.9987 2.4878 20 1 12.1527 -5.3631 2.0092 21 1 13.2463 -3.9098 0.4054 22 6 5.7015 0.0829 1.6780 23 6 4.3266 0.1747 1.7289 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.7517 -0.1583 2.1370 32 1 1.6053 -1.7198 1.2952 33 1 3.5102 -2.7162 0.1828 34 1 5.9596 -2.9004 0.0709 35 1 9.2773 -1.1873 -1.2340 36 1 9.0938 -2.9229 -1.5845 37 1 7.6679 -1.8580 -1.5922 38 1 10.6458 -5.1747 -0.6788 39 1 6.3125 0.8669 2.1001 40 1 3.8609 1.0320 2.1919 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094901987.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:26 Heat of formation + Delta-G solvation = -43.757475 kcal Electronic energy + Delta-G solvation = -18970.665733 eV Core-core repulsion = 16135.258028 eV Total energy + Delta-G solvation = -2835.407705 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.65512 -38.04992 -36.00004 -33.80938 -31.61217 -30.90559 -30.09390 -27.32271 -26.88352 -25.18339 -23.43682 -22.29009 -21.34925 -20.06839 -18.76201 -16.63426 -16.01721 -15.58514 -15.10865 -14.79963 -14.47796 -14.29722 -14.00507 -13.53936 -13.26230 -13.20664 -12.98601 -12.42831 -12.32298 -12.18994 -11.97406 -11.68191 -11.44920 -11.08597 -10.99570 -10.86475 -10.78195 -10.75563 -10.64422 -10.62341 -10.23086 -10.06592 -8.96879 -8.69893 -8.51934 -8.39082 -8.27446 -6.04185 -4.08830 1.14264 1.66071 3.19226 3.30870 3.38459 3.46078 4.21662 4.42907 4.63813 4.69496 4.80876 4.98887 5.06077 5.18450 5.25541 5.28828 5.37460 5.46051 5.51280 5.65351 5.69665 5.72284 5.74184 5.90602 5.91932 6.14019 6.15618 6.18985 6.23819 6.39235 6.65985 6.70225 6.75156 6.84965 6.94466 7.01661 7.18940 7.51850 7.76593 8.00714 8.25496 8.67248 8.95937 9.55823 11.02664 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.041712 B = 0.004016 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.114181 B = 6970.460644 C = 7219.619194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.152 4.152 4 C -0.077 4.077 5 C -0.065 4.065 6 C -0.135 4.135 7 C -0.066 4.066 8 C -0.158 4.158 9 C 0.397 3.603 10 O -0.465 6.465 11 C 0.005 3.995 12 H 0.052 0.948 13 C -0.128 4.128 14 C -0.505 4.505 15 H 0.066 0.934 16 C 0.061 3.939 17 N -0.893 5.893 18 Si 0.897 3.103 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.283 1.283 22 C -0.072 4.072 23 C -0.134 4.134 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.122 0.878 34 H 0.139 0.861 35 H 0.032 0.968 36 H 0.094 0.906 37 H 0.013 0.987 38 H 0.261 0.739 39 H 0.128 0.872 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.083 6.326 0.155 19.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.209 4.209 4 C -0.114 4.114 5 C -0.065 4.065 6 C -0.153 4.153 7 C -0.084 4.084 8 C -0.159 4.159 9 C 0.275 3.725 10 O -0.341 6.341 11 C -0.014 4.014 12 H 0.069 0.931 13 C -0.186 4.186 14 C -0.543 4.543 15 H 0.084 0.916 16 C -0.140 4.140 17 N -0.532 5.532 18 Si 0.725 3.275 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.090 4.090 23 C -0.152 4.152 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.140 0.860 34 H 0.157 0.843 35 H 0.051 0.949 36 H 0.113 0.887 37 H 0.032 0.968 38 H 0.071 0.929 39 H 0.146 0.854 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -17.659 6.637 0.306 18.867 hybrid contribution 0.828 -0.314 0.350 0.953 sum -16.830 6.323 0.656 17.991 Atomic orbital electron populations 1.21851 0.95214 1.01659 1.01686 1.21085 0.95260 0.96617 0.98067 1.21933 1.02014 0.95620 1.01334 1.20713 0.91217 1.01186 0.98324 1.19993 0.95317 0.94259 0.96980 1.20989 0.94762 0.98125 1.01377 1.21683 0.93170 0.98014 0.95502 1.21118 0.97065 0.96012 1.01658 1.23412 0.86334 0.87955 0.74788 1.90349 1.65892 1.40287 1.37549 1.19152 0.97127 0.91267 0.93846 0.93052 1.21664 0.97913 1.02700 0.96339 1.21117 1.02169 1.12835 1.18181 0.91578 1.24933 0.98266 0.95754 0.95061 1.69873 1.37991 1.17924 1.27425 0.86441 0.83556 0.78039 0.79498 1.19619 1.20972 1.20942 1.21438 0.94491 0.97076 0.95967 1.20911 0.93341 0.98995 1.01983 0.92712 0.92702 0.92759 0.90943 0.91851 0.92969 0.92870 0.91085 0.90961 0.85973 0.84341 0.94917 0.88748 0.96751 0.92949 0.85441 0.86221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.19 37.16 0.34 -0.72 16 2 C -0.09 -0.81 2.91 -90.62 -0.26 -1.08 16 3 C -0.15 -1.37 8.75 37.16 0.33 -1.05 16 4 C -0.08 -0.73 4.83 -27.88 -0.13 -0.87 16 5 C -0.07 -0.82 4.72 -104.50 -0.49 -1.31 16 6 C -0.13 -1.85 9.68 -39.65 -0.38 -2.23 16 7 C -0.07 -1.10 9.36 -39.10 -0.37 -1.47 16 8 C -0.16 -3.00 5.87 -105.07 -0.62 -3.62 16 9 C 0.40 9.24 6.17 -30.69 -0.19 9.05 16 10 O -0.47 -11.92 15.95 5.58 0.09 -11.84 16 11 C 0.00 0.12 2.08 -92.92 -0.19 -0.07 16 12 H 0.05 1.30 6.47 -51.93 -0.34 0.96 16 13 C -0.13 -3.08 8.95 37.16 0.33 -2.75 16 14 C -0.50 -14.35 8.32 -34.44 -0.29 -14.64 16 15 H 0.07 1.96 7.14 -52.49 -0.37 1.59 16 16 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 17 N -0.89 -25.06 11.32 55.43 0.63 -24.43 16 18 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 19 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C -0.07 -1.19 9.60 -39.11 -0.38 -1.57 16 23 C -0.13 -1.81 7.93 -39.65 -0.31 -2.12 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.67 6.26 -51.93 -0.33 0.34 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 32 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 33 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.14 2.35 6.36 -52.49 -0.33 2.02 16 35 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 37 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 39 H 0.13 2.12 7.65 -52.49 -0.40 1.71 16 40 H 0.12 1.32 8.03 -52.49 -0.42 0.90 16 LS Contribution 327.44 15.07 4.93 4.93 Total: -1.00 -30.05 327.44 -8.37 -38.41 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -6.29 Total: -0.94 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: -2.71 Total: -22.84 kcal Atomic # 7 Polarization: -25.06 SS G_CDS: 0.63 Total: -24.43 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.09 Total: -11.84 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.05 -8.37 -38.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094901987.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.343 kcal (2) G-P(sol) polarization free energy of solvation -30.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds