Wall clock time and date at job start Mon Mar 30 2020 06:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 C 1.50710 * 109.46737 * 174.99856 * 4 2 1 6 6 C 1.38403 * 119.82405 * 269.72404 * 5 4 2 7 7 C 1.37893 * 120.16734 * 179.76675 * 6 5 4 8 8 C 1.39850 * 119.82393 * 0.48492 * 7 6 5 9 9 C 1.47167 * 120.16891 * 179.78772 * 8 7 6 10 10 O 1.21256 * 120.00099 * 179.97438 * 9 8 7 11 11 C 1.50700 * 120.00212 * 359.97438 * 9 8 7 12 12 H 1.09004 * 109.47137 * 330.00183 * 11 9 8 13 13 C 1.53005 * 109.47271 * 89.99567 * 11 9 8 14 14 C 1.50699 * 109.47279 * 209.99766 * 11 9 8 15 15 H 1.07998 * 120.00028 * 0.02562 * 14 11 9 16 16 C 1.37877 * 119.99857 * 180.02562 * 14 11 9 17 17 N 1.31512 * 120.00064 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 120.00050 * 180.02562 * 16 14 11 19 19 H 1.48506 * 109.46696 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47350 * 119.99799 * 18 16 14 21 21 H 1.48499 * 109.46968 * 240.00079 * 18 16 14 22 22 C 1.39853 * 119.65969 * 359.77261 * 8 7 6 23 23 C 1.37889 * 119.82289 * 359.97438 * 22 8 7 24 24 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 27 27 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 28 28 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 30 30 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 31 31 H 1.08997 * 109.47756 * 294.99575 * 4 2 1 32 32 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 33 33 H 1.08001 * 119.91762 * 0.02562 * 6 5 4 34 34 H 1.08000 * 120.08092 * 180.23717 * 7 6 5 35 35 H 1.08998 * 109.46576 * 59.99801 * 13 11 9 36 36 H 1.08991 * 109.47450 * 180.02562 * 13 11 9 37 37 H 1.08997 * 109.46980 * 300.00377 * 13 11 9 38 38 H 0.97003 * 119.99827 * 180.02562 * 17 16 14 39 39 H 1.07996 * 120.08403 * 179.97438 * 22 8 7 40 40 H 1.07994 * 119.91088 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.8294 1.1889 6 6 4.1292 -1.9349 0.5986 7 6 5.5028 -2.0389 0.5352 8 6 6.3026 -1.0285 1.0785 9 6 7.7693 -1.1339 1.0192 10 8 8.4598 -0.2558 1.4907 11 6 8.4130 -2.3332 0.3724 12 1 7.7643 -3.2013 0.4898 13 6 8.6286 -2.0554 -1.1167 14 6 9.7412 -2.6062 1.0300 15 1 10.0847 -1.9746 1.8359 16 6 10.5180 -3.6621 0.6026 17 7 10.0995 -4.4315 -0.3785 18 14 12.1641 -4.0009 1.4181 19 1 12.4021 -2.9987 2.4878 20 1 12.1527 -5.3631 2.0092 21 1 13.2463 -3.9098 0.4054 22 6 5.7015 0.0829 1.6780 23 6 4.3266 0.1747 1.7289 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.7517 -0.1583 2.1370 32 1 1.6053 -1.7198 1.2952 33 1 3.5102 -2.7162 0.1828 34 1 5.9596 -2.9004 0.0709 35 1 9.2773 -1.1873 -1.2340 36 1 9.0938 -2.9229 -1.5845 37 1 7.6679 -1.8580 -1.5922 38 1 10.6458 -5.1747 -0.6788 39 1 6.3125 0.8669 2.1001 40 1 3.8609 1.0320 2.1919 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094901987.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:25 Heat of formation + Delta-G solvation = -58.246587 kcal Electronic energy + Delta-G solvation = -18971.294028 eV Core-core repulsion = 16135.258028 eV Total energy + Delta-G solvation = -2836.036000 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.04365 -39.54447 -36.91485 -35.86583 -33.11810 -32.20059 -31.67565 -28.06304 -27.85644 -27.30378 -24.99973 -23.50419 -22.78130 -20.82817 -20.38967 -18.50638 -17.73278 -17.02374 -16.36741 -16.26817 -15.63306 -15.50480 -15.20557 -15.07682 -14.85797 -14.50119 -14.17678 -13.79694 -13.58947 -13.25095 -13.04404 -12.96650 -12.80230 -12.71261 -12.61750 -12.48838 -12.26826 -12.14299 -11.89928 -11.71337 -11.58781 -11.45270 -11.06167 -10.58619 -10.16986 -9.89312 -9.61366 -8.17989 -6.30517 -0.21347 0.46996 1.37081 1.38855 1.51492 1.63723 2.39710 2.88711 3.10218 3.38688 3.80416 3.87629 4.06231 4.11263 4.15552 4.38881 4.43074 4.49286 4.63647 4.70996 4.80609 4.84234 4.87306 4.93422 4.96482 5.00762 5.07467 5.10439 5.11593 5.17697 5.36107 5.41501 5.43578 5.47248 5.54029 5.56064 5.66745 5.68056 5.91631 6.01770 6.19733 6.72978 6.87269 7.36920 8.87496 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.041712 B = 0.004016 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.114181 B = 6970.460644 C = 7219.619194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 C -0.154 4.154 4 C -0.075 4.075 5 C -0.047 4.047 6 C -0.131 4.131 7 C -0.073 4.073 8 C -0.191 4.191 9 C 0.397 3.603 10 O -0.505 6.505 11 C -0.001 4.001 12 H 0.048 0.952 13 C -0.116 4.116 14 C -0.536 4.536 15 H 0.042 0.958 16 C 0.022 3.978 17 N -0.908 5.908 18 Si 0.956 3.044 19 H -0.279 1.279 20 H -0.270 1.270 21 H -0.274 1.274 22 C -0.079 4.079 23 C -0.126 4.126 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.045 0.955 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.152 0.848 34 H 0.129 0.871 35 H 0.018 0.982 36 H 0.076 0.924 37 H 0.043 0.957 38 H 0.266 0.734 39 H 0.119 0.881 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.812 6.241 0.326 21.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 C -0.211 4.211 4 C -0.112 4.112 5 C -0.047 4.047 6 C -0.148 4.148 7 C -0.091 4.091 8 C -0.192 4.192 9 C 0.279 3.721 10 O -0.384 6.384 11 C -0.020 4.020 12 H 0.065 0.935 13 C -0.174 4.174 14 C -0.574 4.574 15 H 0.060 0.940 16 C -0.178 4.178 17 N -0.547 5.547 18 Si 0.781 3.219 19 H -0.204 1.204 20 H -0.196 1.196 21 H -0.199 1.199 22 C -0.097 4.097 23 C -0.144 4.144 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.170 0.830 34 H 0.147 0.853 35 H 0.038 0.962 36 H 0.094 0.906 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.137 0.863 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -20.406 6.535 0.463 21.432 hybrid contribution 1.539 -0.277 0.277 1.588 sum -18.867 6.258 0.740 19.891 Atomic orbital electron populations 1.21816 0.93709 1.02306 1.02243 1.21066 0.96453 0.96086 0.97245 1.21953 1.00815 0.96149 1.02186 1.20817 0.88405 1.02649 0.99355 1.20432 0.97286 0.92799 0.94180 1.21303 0.93503 0.99268 1.00743 1.21667 0.94544 0.97162 0.95705 1.20740 0.94359 0.98584 1.05473 1.23463 0.88644 0.86522 0.73501 1.90313 1.67302 1.41252 1.39500 1.19135 0.96019 0.92323 0.94486 0.93463 1.21487 0.98966 1.01105 0.95859 1.21281 1.04205 1.13340 1.18526 0.93991 1.25610 1.01283 0.95348 0.95552 1.69946 1.39027 1.17983 1.27727 0.85543 0.79763 0.78054 0.78553 1.20393 1.19564 1.19948 1.21474 0.96043 0.96176 0.96052 1.21204 0.91835 1.00096 1.01226 0.92433 0.92039 0.92008 0.91768 0.93636 0.92575 0.91742 0.89495 0.89348 0.82985 0.85288 0.96245 0.90564 0.93829 0.92438 0.86272 0.83243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.19 71.98 0.66 -0.86 16 2 C -0.09 -1.26 2.91 -10.79 -0.03 -1.29 16 3 C -0.15 -2.32 8.75 71.98 0.63 -1.69 16 4 C -0.08 -1.10 4.83 29.85 0.14 -0.96 16 5 C -0.05 -1.03 4.72 -19.78 -0.09 -1.12 16 6 C -0.13 -3.25 9.68 22.23 0.22 -3.04 16 7 C -0.07 -2.40 9.36 22.58 0.21 -2.19 16 8 C -0.19 -7.41 5.87 -20.15 -0.12 -7.53 16 9 C 0.40 19.39 6.17 28.03 0.17 19.56 16 10 O -0.50 -27.39 15.95 -2.95 -0.05 -27.44 16 11 C 0.00 -0.04 2.08 -12.28 -0.03 -0.07 16 12 H 0.05 2.49 6.47 -2.38 -0.02 2.47 16 13 C -0.12 -5.75 8.95 71.98 0.64 -5.11 16 14 C -0.54 -31.71 8.32 25.60 0.21 -31.50 16 15 H 0.04 2.62 7.14 -2.91 -0.02 2.60 16 16 C 0.02 1.23 5.30 84.65 0.45 1.68 16 17 N -0.91 -51.56 11.32 21.45 0.24 -51.32 16 18 Si 0.96 45.22 29.54 68.60 2.03 47.24 16 19 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 22 C -0.08 -2.63 9.60 22.58 0.22 -2.41 16 23 C -0.13 -3.10 7.93 22.23 0.18 -2.92 16 24 H 0.06 0.59 8.14 -2.39 -0.02 0.58 16 25 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.04 0.85 6.26 -2.39 -0.01 0.83 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 1.08 8.08 -2.39 -0.02 1.06 16 32 H 0.09 1.09 8.08 -2.39 -0.02 1.07 16 33 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 34 H 0.13 4.44 6.36 -2.91 -0.02 4.42 16 35 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.08 4.04 6.07 -2.39 -0.01 4.02 16 37 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 39 H 0.12 4.07 7.65 -2.91 -0.02 4.05 16 40 H 0.15 2.78 8.03 -2.91 -0.02 2.76 16 Total: -1.00 -67.04 327.44 6.69 -60.35 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 1.00 Total: 10.61 kcal Atomic # 6 Polarization: -42.91 SS G_CDS: 3.47 Total: -39.44 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: 0.24 Total: -51.32 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.05 Total: -27.44 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -67.04 6.69 -60.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094901987.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.100 kcal (2) G-P(sol) polarization free energy of solvation -67.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds