Wall clock time and date at job start Mon Mar 30 2020 07:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.89216 * 2 1 4 4 C 1.53502 * 109.90257 * 238.82747 * 2 1 3 5 5 N 1.46559 * 109.10353 * 178.78562 * 4 2 1 6 6 C 1.46901 * 111.00159 * 287.97886 * 5 4 2 7 7 C 1.52999 * 109.46768 * 205.53034 * 6 5 4 8 8 C 1.50700 * 109.47104 * 179.97438 * 7 6 5 9 9 H 1.08002 * 119.99858 * 0.02562 * 8 7 6 10 10 C 1.37873 * 120.00243 * 179.97438 * 8 7 6 11 11 N 1.31520 * 120.00069 * 180.02562 * 10 8 7 12 12 Si 1.86806 * 119.99925 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47195 * 89.99732 * 12 10 8 14 14 H 1.48502 * 109.46737 * 209.99685 * 12 10 8 15 15 H 1.48497 * 109.46687 * 329.99401 * 12 10 8 16 16 C 1.39732 * 113.02430 * 53.44536 * 5 4 2 17 17 C 1.39087 * 118.85980 * 157.20606 * 16 5 4 18 18 C 1.38118 * 120.22279 * 179.79589 * 17 16 5 19 19 C 1.38256 * 120.30094 * 359.96077 * 18 17 16 20 20 C 1.38264 * 119.97376 * 0.10915 * 19 18 17 21 21 C 1.38649 * 120.00848 * 0.02562 * 20 19 18 22 22 N 1.40475 * 119.46922 * 179.65707 * 21 20 19 23 23 H 1.08996 * 109.47219 * 298.92840 * 1 2 3 24 24 H 1.09001 * 109.47094 * 58.93080 * 1 2 3 25 25 H 1.09000 * 109.46912 * 178.92480 * 1 2 3 26 26 H 1.08995 * 109.47005 * 154.59961 * 3 2 1 27 27 H 1.08995 * 109.46853 * 274.60028 * 3 2 1 28 28 H 1.09000 * 109.47229 * 34.59780 * 3 2 1 29 29 H 1.09002 * 109.53300 * 58.90752 * 4 2 1 30 30 H 1.08993 * 109.53821 * 298.67783 * 4 2 1 31 31 H 1.08995 * 109.47103 * 85.52981 * 6 5 4 32 32 H 1.09002 * 109.46963 * 325.52976 * 6 5 4 33 33 H 1.09002 * 109.47332 * 299.99717 * 7 6 5 34 34 H 1.09008 * 109.47276 * 59.99805 * 7 6 5 35 35 H 0.97001 * 119.99636 * 180.02562 * 11 10 8 36 36 H 1.07998 * 119.88897 * 359.73639 * 17 16 5 37 37 H 1.08003 * 119.85038 * 179.97438 * 18 17 16 38 38 H 1.08004 * 120.01471 * 180.13080 * 19 18 17 39 39 H 1.07999 * 119.99676 * 179.97438 * 20 19 18 40 40 H 0.97002 * 121.18643 * 348.68609 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0506 1.4387 0.0000 4 6 2.0526 -0.7471 -1.2349 5 7 3.5178 -0.7115 -1.2327 6 6 4.0122 0.6339 -1.5544 7 6 5.4139 0.5310 -2.1588 8 6 5.9209 1.9112 -2.4895 9 1 5.3051 2.7753 -2.2882 10 6 7.1714 2.0708 -3.0479 11 7 7.6140 3.2753 -3.3360 12 14 8.2368 0.5763 -3.3954 13 1 7.9604 0.0794 -4.7672 14 1 9.6690 0.9529 -3.2845 15 1 7.9281 -0.4914 -2.4106 16 6 4.0740 -1.1770 -0.0384 17 6 5.3820 -1.6499 -0.0465 18 6 5.9611 -2.1127 1.1189 19 6 5.2463 -2.1092 2.3023 20 6 3.9448 -1.6428 2.3218 21 6 3.3567 -1.1794 1.1548 22 7 2.0314 -0.7148 1.1861 23 1 -0.3633 0.4971 0.8994 24 1 -0.3633 0.5304 -0.8803 25 1 -0.3633 -1.0275 -0.0193 26 1 3.0471 1.4645 0.4408 27 1 2.0967 1.8083 -1.0243 28 1 1.3788 2.0682 0.5835 29 1 1.6778 -0.2653 -2.1380 30 1 1.7132 -1.7824 -1.2053 31 1 4.0517 1.2335 -0.6451 32 1 3.3408 1.1058 -2.2719 33 1 6.0853 0.0592 -1.4413 34 1 5.3744 -0.0687 -3.0683 35 1 8.4936 3.3875 -3.7292 36 1 5.9464 -1.6560 -0.9672 37 1 6.9771 -2.4789 1.1057 38 1 5.7044 -2.4702 3.2113 39 1 3.3859 -1.6402 3.2459 40 1 1.4666 -0.8593 1.9614 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096548974.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:49 Heat of formation + Delta-G solvation = 47.881630 kcal Electronic energy + Delta-G solvation = -20303.935340 eV Core-core repulsion = 17504.794156 eV Total energy + Delta-G solvation = -2799.141184 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.72353 -37.27633 -35.48664 -32.86469 -32.27385 -30.38844 -29.69220 -27.68456 -27.47669 -25.75050 -23.72203 -21.98791 -21.84171 -20.09215 -18.86718 -17.18912 -16.86380 -16.29294 -15.82938 -14.63956 -14.56729 -14.15231 -13.97900 -13.71885 -13.62717 -13.48544 -12.63211 -12.51029 -12.36425 -12.29769 -12.07041 -11.83541 -11.56516 -11.46794 -11.16759 -10.95054 -10.82923 -10.69373 -10.20629 -9.80965 -9.74269 -9.64063 -9.12059 -8.65978 -8.48917 -7.64079 -7.03525 -6.01159 -3.98619 1.78031 1.94210 3.35551 3.42524 3.47058 3.47938 4.12448 4.32275 4.49650 4.77112 4.87957 4.99308 5.20766 5.33856 5.37968 5.42291 5.50104 5.58879 5.70934 5.73787 5.80328 5.86704 5.87368 5.95751 6.03270 6.20231 6.23378 6.37940 6.48079 6.57080 6.70227 6.83867 6.96708 7.07553 7.19458 7.38521 7.50248 7.58503 7.84442 7.89686 8.00766 8.55820 9.02466 9.61814 11.12231 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019843 B = 0.007388 C = 0.005917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.771056 B = 3789.169027 C = 4731.040857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.139 3.861 3 C -0.171 4.171 4 C 0.055 3.945 5 N -0.496 5.496 6 C 0.062 3.938 7 C -0.014 4.014 8 C -0.519 4.519 9 H 0.069 0.931 10 C 0.068 3.932 11 N -0.905 5.905 12 Si 0.879 3.121 13 H -0.277 1.277 14 H -0.289 1.289 15 H -0.263 1.263 16 C 0.052 3.948 17 C -0.072 4.072 18 C -0.162 4.162 19 C -0.098 4.098 20 C -0.183 4.183 21 C 0.171 3.829 22 N -0.747 5.747 23 H 0.058 0.942 24 H 0.072 0.928 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.025 0.975 34 H 0.017 0.983 35 H 0.262 0.738 36 H 0.131 0.869 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.281 -9.858 9.568 18.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.050 3.950 3 C -0.229 4.229 4 C -0.074 4.074 5 N -0.212 5.212 6 C -0.061 4.061 7 C -0.052 4.052 8 C -0.557 4.557 9 H 0.087 0.913 10 C -0.133 4.133 11 N -0.544 5.544 12 Si 0.707 3.293 13 H -0.203 1.203 14 H -0.215 1.215 15 H -0.188 1.188 16 C -0.048 4.048 17 C -0.092 4.092 18 C -0.182 4.182 19 C -0.117 4.117 20 C -0.206 4.206 21 C 0.068 3.932 22 N -0.381 5.381 23 H 0.077 0.923 24 H 0.091 0.909 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.070 0.930 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.035 0.965 35 H 0.072 0.928 36 H 0.149 0.851 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -12.039 -9.952 8.911 17.983 hybrid contribution 0.166 -0.162 0.668 0.707 sum -11.872 -10.114 9.579 18.303 Atomic orbital electron populations 1.21948 0.93487 1.02310 1.02675 1.21207 0.94084 0.92266 0.87395 1.22764 1.02025 0.95047 1.03021 1.22634 0.87582 1.00547 0.96675 1.58850 1.06406 1.26663 1.29251 1.22772 0.98764 0.84960 0.99639 1.19770 0.91738 0.97662 0.96008 1.21057 1.01696 0.91982 1.40968 0.91255 1.24974 0.97641 0.95668 0.95009 1.69917 1.19145 1.21477 1.43862 0.86780 0.79503 0.83839 0.79215 1.20327 1.21517 1.18768 1.18276 0.94849 1.04808 0.86837 1.21086 0.93489 0.95744 0.98865 1.20797 1.00083 1.04550 0.92766 1.20759 0.93756 0.99589 0.97627 1.20380 0.96424 1.07884 0.95875 1.18018 0.85991 0.96210 0.92953 1.45002 1.10618 1.63752 1.18692 0.92275 0.90916 0.92118 0.90830 0.90845 0.92985 0.89472 0.90634 0.92968 0.91417 0.95657 0.96479 0.92793 0.85087 0.86578 0.86723 0.86935 0.76853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.63 37.16 0.32 -1.03 16 2 C 0.14 1.75 1.10 -131.13 -0.14 1.61 16 3 C -0.17 -2.41 7.33 37.16 0.27 -2.14 16 4 C 0.05 0.79 4.92 -3.75 -0.02 0.77 16 5 N -0.50 -8.91 4.49 -170.91 -0.77 -9.68 16 6 C 0.06 1.27 3.19 -3.82 -0.01 1.26 16 7 C -0.01 -0.34 3.74 -27.88 -0.10 -0.45 16 8 C -0.52 -14.86 9.66 -34.44 -0.33 -15.19 16 9 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 10 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 11 N -0.90 -28.11 13.96 55.43 0.77 -27.34 16 12 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 14 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 15 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 16 C 0.05 0.94 4.81 -83.58 -0.40 0.54 16 17 C -0.07 -1.32 8.37 -39.31 -0.33 -1.64 16 18 C -0.16 -2.57 10.03 -39.62 -0.40 -2.96 16 19 C -0.10 -1.39 10.05 -39.57 -0.40 -1.79 16 20 C -0.18 -2.60 9.90 -39.42 -0.39 -2.99 16 21 C 0.17 2.68 6.06 -83.38 -0.51 2.18 16 22 N -0.75 -9.68 5.34 -45.06 -0.24 -9.92 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 1.26 5.45 -51.93 -0.28 0.97 16 27 H 0.07 1.07 6.15 -51.93 -0.32 0.75 16 28 H 0.05 0.64 7.92 -51.93 -0.41 0.23 16 29 H 0.09 1.16 7.73 -51.93 -0.40 0.76 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.05 1.10 4.69 -51.93 -0.24 0.86 16 32 H 0.07 1.33 6.60 -51.93 -0.34 0.99 16 33 H 0.03 0.63 4.38 -51.93 -0.23 0.40 16 34 H 0.02 0.42 7.57 -51.92 -0.39 0.03 16 35 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 36 H 0.13 2.58 6.40 -52.49 -0.34 2.24 16 37 H 0.12 1.63 8.06 -52.48 -0.42 1.20 16 38 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 39 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 40 H 0.40 4.23 8.69 -40.82 -0.35 3.87 16 LS Contribution 303.91 15.07 4.58 4.58 Total: -1.00 -31.28 303.91 -8.72 -40.00 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -5.86 Total: 4.88 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: -2.54 Total: -19.94 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: -0.23 Total: -46.94 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.28 -8.72 -40.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096548974.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.881 kcal (2) G-P(sol) polarization free energy of solvation -31.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds