Wall clock time and date at job start Mon Mar 30 2020 07:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.89216 * 2 1 4 4 C 1.53502 * 109.90257 * 238.82747 * 2 1 3 5 5 N 1.46559 * 109.10353 * 178.78562 * 4 2 1 6 6 C 1.46901 * 111.00159 * 287.97886 * 5 4 2 7 7 C 1.52999 * 109.46768 * 205.53034 * 6 5 4 8 8 C 1.50700 * 109.47104 * 179.97438 * 7 6 5 9 9 H 1.08002 * 119.99858 * 0.02562 * 8 7 6 10 10 C 1.37873 * 120.00243 * 179.97438 * 8 7 6 11 11 N 1.31520 * 120.00069 * 180.02562 * 10 8 7 12 12 Si 1.86806 * 119.99925 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47195 * 89.99732 * 12 10 8 14 14 H 1.48502 * 109.46737 * 209.99685 * 12 10 8 15 15 H 1.48497 * 109.46687 * 329.99401 * 12 10 8 16 16 C 1.39732 * 113.02430 * 53.44536 * 5 4 2 17 17 C 1.39087 * 118.85980 * 157.20606 * 16 5 4 18 18 C 1.38118 * 120.22279 * 179.79589 * 17 16 5 19 19 C 1.38256 * 120.30094 * 359.96077 * 18 17 16 20 20 C 1.38264 * 119.97376 * 0.10915 * 19 18 17 21 21 C 1.38649 * 120.00848 * 0.02562 * 20 19 18 22 22 N 1.40475 * 119.46922 * 179.65707 * 21 20 19 23 23 H 1.08996 * 109.47219 * 298.92840 * 1 2 3 24 24 H 1.09001 * 109.47094 * 58.93080 * 1 2 3 25 25 H 1.09000 * 109.46912 * 178.92480 * 1 2 3 26 26 H 1.08995 * 109.47005 * 154.59961 * 3 2 1 27 27 H 1.08995 * 109.46853 * 274.60028 * 3 2 1 28 28 H 1.09000 * 109.47229 * 34.59780 * 3 2 1 29 29 H 1.09002 * 109.53300 * 58.90752 * 4 2 1 30 30 H 1.08993 * 109.53821 * 298.67783 * 4 2 1 31 31 H 1.08995 * 109.47103 * 85.52981 * 6 5 4 32 32 H 1.09002 * 109.46963 * 325.52976 * 6 5 4 33 33 H 1.09002 * 109.47332 * 299.99717 * 7 6 5 34 34 H 1.09008 * 109.47276 * 59.99805 * 7 6 5 35 35 H 0.97001 * 119.99636 * 180.02562 * 11 10 8 36 36 H 1.07998 * 119.88897 * 359.73639 * 17 16 5 37 37 H 1.08003 * 119.85038 * 179.97438 * 18 17 16 38 38 H 1.08004 * 120.01471 * 180.13080 * 19 18 17 39 39 H 1.07999 * 119.99676 * 179.97438 * 20 19 18 40 40 H 0.97002 * 121.18643 * 348.68609 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0506 1.4387 0.0000 4 6 2.0526 -0.7471 -1.2349 5 7 3.5178 -0.7115 -1.2327 6 6 4.0122 0.6339 -1.5544 7 6 5.4139 0.5310 -2.1588 8 6 5.9209 1.9112 -2.4895 9 1 5.3051 2.7753 -2.2882 10 6 7.1714 2.0708 -3.0479 11 7 7.6140 3.2753 -3.3360 12 14 8.2368 0.5763 -3.3954 13 1 7.9604 0.0794 -4.7672 14 1 9.6690 0.9529 -3.2845 15 1 7.9281 -0.4914 -2.4106 16 6 4.0740 -1.1770 -0.0384 17 6 5.3820 -1.6499 -0.0465 18 6 5.9611 -2.1127 1.1189 19 6 5.2463 -2.1092 2.3023 20 6 3.9448 -1.6428 2.3218 21 6 3.3567 -1.1794 1.1548 22 7 2.0314 -0.7148 1.1861 23 1 -0.3633 0.4971 0.8994 24 1 -0.3633 0.5304 -0.8803 25 1 -0.3633 -1.0275 -0.0193 26 1 3.0471 1.4645 0.4408 27 1 2.0967 1.8083 -1.0243 28 1 1.3788 2.0682 0.5835 29 1 1.6778 -0.2653 -2.1380 30 1 1.7132 -1.7824 -1.2053 31 1 4.0517 1.2335 -0.6451 32 1 3.3408 1.1058 -2.2719 33 1 6.0853 0.0592 -1.4413 34 1 5.3744 -0.0687 -3.0683 35 1 8.4936 3.3875 -3.7292 36 1 5.9464 -1.6560 -0.9672 37 1 6.9771 -2.4789 1.1057 38 1 5.7044 -2.4702 3.2113 39 1 3.3859 -1.6402 3.2459 40 1 1.4666 -0.8593 1.9614 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096548974.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:49 Heat of formation + Delta-G solvation = 27.392890 kcal Electronic energy + Delta-G solvation = -20304.823798 eV Core-core repulsion = 17504.794156 eV Total energy + Delta-G solvation = -2800.029643 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.93190 -38.42554 -36.85738 -34.94938 -33.35622 -32.26165 -30.92627 -28.88037 -28.52759 -27.25172 -25.21868 -23.32835 -23.15614 -21.72321 -20.01183 -18.98581 -18.36085 -17.45536 -17.15022 -16.39952 -15.93064 -15.51008 -15.36924 -15.02542 -14.85708 -14.79063 -14.49588 -13.90159 -13.55711 -13.40205 -13.35501 -13.07379 -12.88958 -12.71249 -12.63321 -12.39871 -12.11214 -12.03646 -11.83684 -11.70534 -11.48316 -11.21806 -10.96951 -10.73490 -9.96268 -8.91867 -8.30234 -8.20210 -6.32994 0.55602 0.73702 1.34410 1.35746 1.48875 2.35724 2.44561 2.85141 3.05695 3.11331 3.75218 3.87912 3.94054 4.07676 4.24365 4.31956 4.41330 4.52248 4.57619 4.60362 4.64266 4.72027 4.80089 4.84661 4.86823 4.98393 5.00901 5.16200 5.20471 5.21843 5.35707 5.39966 5.45873 5.57222 5.63205 5.77478 5.93791 6.14040 6.23873 6.29856 6.66004 6.74114 6.98463 7.31383 8.86373 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019843 B = 0.007388 C = 0.005917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.771056 B = 3789.169027 C = 4731.040857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.143 3.857 3 C -0.166 4.166 4 C 0.050 3.950 5 N -0.506 5.506 6 C 0.080 3.920 7 C -0.007 4.007 8 C -0.527 4.527 9 H 0.033 0.967 10 C 0.010 3.990 11 N -0.949 5.949 12 Si 0.945 3.055 13 H -0.267 1.267 14 H -0.282 1.282 15 H -0.250 1.250 16 C 0.022 3.978 17 C -0.099 4.099 18 C -0.173 4.173 19 C -0.091 4.091 20 C -0.182 4.182 21 C 0.167 3.833 22 N -0.737 5.737 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.039 0.961 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.041 0.959 32 H 0.067 0.933 33 H 0.024 0.976 34 H 0.013 0.987 35 H 0.266 0.734 36 H 0.106 0.894 37 H 0.130 0.870 38 H 0.149 0.851 39 H 0.144 0.856 40 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.638 -11.825 11.303 21.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.054 3.946 3 C -0.224 4.224 4 C -0.078 4.078 5 N -0.222 5.222 6 C -0.045 4.045 7 C -0.044 4.044 8 C -0.566 4.566 9 H 0.052 0.948 10 C -0.187 4.187 11 N -0.590 5.590 12 Si 0.769 3.231 13 H -0.192 1.192 14 H -0.208 1.208 15 H -0.174 1.174 16 C -0.077 4.077 17 C -0.119 4.119 18 C -0.194 4.194 19 C -0.110 4.110 20 C -0.205 4.205 21 C 0.063 3.937 22 N -0.371 5.371 23 H 0.092 0.908 24 H 0.100 0.900 25 H 0.091 0.909 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.113 0.887 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.042 0.958 34 H 0.031 0.969 35 H 0.075 0.925 36 H 0.125 0.875 37 H 0.147 0.853 38 H 0.166 0.834 39 H 0.161 0.839 40 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -13.438 -11.933 10.668 20.899 hybrid contribution 0.543 0.504 0.196 0.767 sum -12.895 -11.428 10.864 20.369 Atomic orbital electron populations 1.21897 0.90277 1.03482 1.03883 1.21188 0.96301 0.90656 0.86453 1.22679 1.00601 0.96815 1.02318 1.22774 0.85444 1.01450 0.98128 1.58695 1.08598 1.24632 1.30291 1.22410 0.96557 0.86709 0.98781 1.19641 0.94194 0.94692 0.95903 1.21375 1.01557 0.93040 1.40626 0.94825 1.25888 0.99181 0.98810 0.94819 1.70056 1.19914 1.23881 1.45151 0.85730 0.77559 0.80144 0.79695 1.19239 1.20772 1.17354 1.18416 0.95341 1.06300 0.87684 1.21097 0.94110 0.97771 0.98962 1.21028 1.00983 1.04625 0.92739 1.21158 0.93659 0.98125 0.98070 1.20785 0.96667 1.06564 0.96437 1.18166 0.86979 0.95916 0.92661 1.44988 1.09816 1.63007 1.19338 0.90844 0.89995 0.90947 0.94208 0.91969 0.91050 0.88727 0.89841 0.94094 0.91470 0.95835 0.96855 0.92494 0.87548 0.85251 0.83375 0.83869 0.75167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.63 71.98 0.62 -1.46 16 2 C 0.14 3.31 1.10 3.63 0.00 3.31 16 3 C -0.17 -4.58 7.33 71.98 0.53 -4.05 16 4 C 0.05 1.39 4.92 86.54 0.43 1.82 16 5 N -0.51 -18.26 4.49 -694.63 -3.12 -21.37 16 6 C 0.08 3.36 3.19 86.30 0.28 3.64 16 7 C -0.01 -0.33 3.74 29.85 0.11 -0.22 16 8 C -0.53 -31.45 9.66 25.60 0.25 -31.21 16 9 H 0.03 2.17 7.99 -2.91 -0.02 2.15 16 10 C 0.01 0.60 5.47 84.65 0.46 1.06 16 11 N -0.95 -60.73 13.96 21.45 0.30 -60.43 16 12 Si 0.95 46.24 27.47 68.60 1.88 48.12 16 13 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 14 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 15 H -0.25 -11.59 6.54 99.48 0.65 -10.94 16 16 C 0.02 0.80 4.81 38.32 0.18 0.98 16 17 C -0.10 -3.66 8.37 22.44 0.19 -3.47 16 18 C -0.17 -5.31 10.03 22.25 0.22 -5.09 16 19 C -0.09 -2.33 10.05 22.28 0.22 -2.10 16 20 C -0.18 -4.62 9.90 22.37 0.22 -4.40 16 21 C 0.17 4.94 6.06 38.09 0.23 5.17 16 22 N -0.74 -17.21 5.34 -296.47 -1.58 -18.79 16 23 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.04 1.37 5.45 -2.39 -0.01 1.36 16 27 H 0.06 1.83 6.15 -2.39 -0.01 1.81 16 28 H 0.07 1.65 7.92 -2.39 -0.02 1.63 16 29 H 0.09 2.42 7.73 -2.39 -0.02 2.40 16 30 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.04 1.81 4.69 -2.39 -0.01 1.80 16 32 H 0.07 2.75 6.60 -2.39 -0.02 2.73 16 33 H 0.02 1.19 4.38 -2.39 -0.01 1.18 16 34 H 0.01 0.66 7.57 -2.38 -0.02 0.64 16 35 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 36 H 0.11 4.33 6.40 -2.91 -0.02 4.31 16 37 H 0.13 3.47 8.06 -2.91 -0.02 3.44 16 38 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 39 H 0.14 2.73 8.06 -2.91 -0.02 2.70 16 40 H 0.41 7.27 8.69 -92.71 -0.81 6.47 16 Total: -1.00 -70.03 303.91 1.61 -68.42 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.18 Total: 20.09 kcal Atomic # 6 Polarization: -39.98 SS G_CDS: 3.95 Total: -36.03 kcal Atomic # 7 Polarization: -96.20 SS G_CDS: -4.40 Total: -100.60 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 1.88 Total: 48.12 kcal Total: -70.03 1.61 -68.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096548974.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.815 kcal (2) G-P(sol) polarization free energy of solvation -70.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds