Wall clock time and date at job start Mon Mar 30 2020 07:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47427 * 2 1 4 4 H 1.08992 * 109.47092 * 59.19509 * 3 2 1 5 5 C 1.50705 * 109.46982 * 179.19384 * 3 2 1 6 6 H 1.07995 * 119.99790 * 119.99984 * 5 3 2 7 7 C 1.37879 * 119.99982 * 300.00116 * 5 3 2 8 8 N 1.31520 * 120.00019 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99948 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46745 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47237 * 119.99772 * 9 7 5 12 12 H 1.48502 * 109.46912 * 239.99912 * 9 7 5 13 13 N 1.46895 * 109.47115 * 299.19314 * 3 2 1 14 14 C 1.46713 * 111.00146 * 318.68011 * 13 3 2 15 15 C 1.53377 * 108.26250 * 284.62448 * 14 13 3 16 16 N 1.46719 * 108.25360 * 293.21364 * 15 14 13 17 17 C 1.46902 * 110.99689 * 284.65630 * 16 15 14 18 18 C 1.39932 * 112.11678 * 49.42813 * 16 15 14 19 19 C 1.39220 * 117.92682 * 162.32230 * 18 16 15 20 20 C 1.38046 * 120.40015 * 179.62340 * 19 18 16 21 21 C 1.38260 * 120.02152 * 0.04801 * 20 19 18 22 22 C 1.38043 * 120.01902 * 0.10305 * 21 20 19 23 23 C 1.38947 * 122.49245 * 342.13941 * 18 16 15 24 24 H 1.08994 * 109.47110 * 294.34921 * 1 2 3 25 25 H 1.09001 * 109.46660 * 54.34531 * 1 2 3 26 26 H 1.09001 * 109.47529 * 174.34193 * 1 2 3 27 27 H 1.09007 * 109.47219 * 239.99406 * 2 1 3 28 28 H 1.09001 * 109.46729 * 120.00006 * 2 1 3 29 29 H 0.96992 * 119.99824 * 180.02562 * 8 7 5 30 30 H 1.08999 * 109.70480 * 44.31506 * 14 13 3 31 31 H 1.08997 * 109.70960 * 164.88608 * 14 13 3 32 32 H 1.08996 * 109.70863 * 52.90240 * 15 14 13 33 33 H 1.09000 * 109.71099 * 173.52500 * 15 14 13 34 34 H 1.09000 * 109.46959 * 60.00101 * 17 16 15 35 35 H 1.09002 * 109.47296 * 180.02562 * 17 16 15 36 36 H 1.09002 * 109.47471 * 299.99970 * 17 16 15 37 37 H 1.08000 * 119.80281 * 359.66005 * 19 18 16 38 38 H 1.07998 * 119.99336 * 180.02562 * 20 19 18 39 39 H 1.08000 * 119.99500 * 180.37433 * 21 20 19 40 40 H 1.08006 * 119.79941 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6651 1.9604 0.8826 5 6 3.5470 1.4424 0.0200 6 1 4.0977 1.9062 -0.7849 7 6 4.2225 0.8502 1.0659 8 7 3.5518 0.2857 2.0464 9 14 6.0904 0.8507 1.0910 10 1 6.6014 1.5450 -0.1181 11 1 6.5689 1.5563 2.3069 12 1 6.5856 -0.5492 1.1040 13 7 1.5664 2.1293 -1.2090 14 6 1.6602 1.2534 -2.3822 15 6 3.1332 1.1666 -2.8007 16 7 3.5530 2.4877 -3.2815 17 6 3.0162 2.7548 -4.6225 18 6 3.2046 3.5080 -2.3895 19 6 3.8506 4.7346 -2.5174 20 6 3.5408 5.7791 -1.6696 21 6 2.5848 5.6107 -0.6852 22 6 1.9409 4.3973 -0.5481 23 6 2.2461 3.3377 -1.3981 24 1 -0.3633 0.4237 0.9362 25 1 -0.3633 0.5990 -0.8351 26 1 -0.3634 -1.0226 -0.1013 27 1 1.8934 -0.5140 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 4.0271 -0.1305 2.7823 30 1 1.2908 0.2595 -2.1293 31 1 1.0693 1.6681 -3.1988 32 1 3.7421 0.8765 -1.9445 33 1 3.2461 0.4323 -3.5984 34 1 1.9271 2.7243 -4.5907 35 1 3.3429 3.7401 -4.9550 36 1 3.3808 1.9981 -5.3173 37 1 4.5982 4.8701 -3.2850 38 1 4.0457 6.7279 -1.7750 39 1 2.3384 6.4299 -0.0260 40 1 1.1949 4.2696 0.2224 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111460245.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:01 Heat of formation + Delta-G solvation = 44.306882 kcal Electronic energy + Delta-G solvation = -21044.964179 eV Core-core repulsion = 18245.667982 eV Total energy + Delta-G solvation = -2799.296197 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.02228 -38.33332 -37.29884 -34.65005 -33.20337 -31.16241 -30.68567 -29.18426 -28.41479 -25.77122 -24.80730 -24.29747 -22.82432 -21.45383 -20.08287 -18.69201 -17.97482 -17.50415 -16.92349 -16.38200 -15.65292 -15.41018 -15.19575 -15.05281 -14.67828 -14.38032 -14.16748 -13.71164 -13.42532 -13.26746 -13.17651 -13.01033 -12.84734 -12.75351 -12.64499 -12.29957 -12.16752 -12.01797 -11.75236 -11.48225 -11.27921 -10.93373 -10.54659 -10.33581 -9.80449 -8.73159 -8.57077 -8.02046 -6.20659 0.63820 0.70329 1.33316 1.38375 1.48874 2.40280 2.89355 3.05436 3.16579 3.39878 4.02732 4.20828 4.26703 4.33701 4.35806 4.48012 4.57897 4.60155 4.65195 4.69209 4.74246 4.80440 4.82456 4.87941 4.95809 5.12831 5.20162 5.31972 5.36624 5.43023 5.51314 5.59123 5.66909 5.76643 5.81782 5.94897 6.01087 6.12323 6.22744 6.38740 6.51345 6.81423 6.95922 7.46564 8.91944 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.015774 B = 0.010379 C = 0.008890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.676019 B = 2696.994129 C = 3148.876375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.115 4.115 3 C 0.231 3.769 4 H 0.003 0.997 5 C -0.539 4.539 6 H 0.070 0.930 7 C 0.028 3.972 8 N -0.909 5.909 9 Si 0.935 3.065 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.279 1.279 13 N -0.499 5.499 14 C 0.022 3.978 15 C -0.003 4.003 16 N -0.503 5.503 17 C 0.032 3.968 18 C 0.050 3.950 19 C -0.122 4.122 20 C -0.135 4.135 21 C -0.126 4.126 22 C -0.130 4.130 23 C 0.094 3.906 24 H 0.033 0.967 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.068 0.932 29 H 0.260 0.740 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.027 0.973 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.132 0.868 38 H 0.148 0.852 39 H 0.140 0.860 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.329 5.118 -10.156 11.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.153 4.153 3 C 0.127 3.873 4 H 0.021 0.979 5 C -0.578 4.578 6 H 0.088 0.912 7 C -0.172 4.172 8 N -0.549 5.549 9 Si 0.763 3.237 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.205 1.205 13 N -0.215 5.215 14 C -0.106 4.106 15 C -0.131 4.131 16 N -0.219 5.219 17 C -0.114 4.114 18 C -0.048 4.048 19 C -0.142 4.142 20 C -0.154 4.154 21 C -0.145 4.145 22 C -0.151 4.151 23 C -0.006 4.006 24 H 0.053 0.947 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.116 0.884 31 H 0.088 0.912 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.046 0.954 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.150 0.850 38 H 0.166 0.834 39 H 0.158 0.842 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.316 5.013 -9.991 11.415 hybrid contribution 0.953 -0.471 0.622 1.232 sum -1.363 4.542 -9.368 10.500 Atomic orbital electron populations 1.21689 0.96200 1.00468 1.00775 1.21667 0.94461 0.97765 1.01442 1.19107 0.92046 0.90649 0.85507 0.97896 1.22201 0.93099 1.35566 1.06884 0.91217 1.25468 1.01147 0.95280 0.95353 1.69991 1.36081 1.38152 1.10663 0.85843 0.82619 0.77631 0.77651 1.20000 1.21191 1.20471 1.59568 1.52944 1.03620 1.05326 1.22822 0.96644 0.99016 0.92156 1.23339 0.97169 0.89899 1.02705 1.59223 1.58071 1.01443 1.03159 1.22527 0.97616 1.03229 0.88004 1.19009 0.94274 0.93033 0.98498 1.21016 0.99861 0.91986 1.01316 1.21125 0.98973 0.99458 0.95861 1.21134 0.97397 0.96803 0.99185 1.20932 1.01507 0.93158 0.99478 1.18975 0.91529 0.92350 0.97739 0.94743 0.92492 0.92803 0.93490 0.91391 0.93056 0.88438 0.91236 0.88405 0.89122 0.95404 0.90419 0.89494 0.84991 0.83433 0.84205 0.87616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.06 9.42 71.98 0.68 -4.38 16 2 C -0.12 -5.18 4.66 30.59 0.14 -5.04 16 3 C 0.23 11.23 1.83 44.17 0.08 11.32 16 4 H 0.00 0.18 8.10 -2.39 -0.02 0.16 16 5 C -0.54 -28.32 5.85 25.60 0.15 -28.17 16 6 H 0.07 3.76 4.25 -2.91 -0.01 3.75 16 7 C 0.03 1.49 5.30 84.65 0.45 1.94 16 8 N -0.91 -50.98 11.31 21.45 0.24 -50.74 16 9 Si 0.94 44.16 29.54 68.60 2.03 46.19 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 13 N -0.50 -21.16 4.14 -674.73 -2.79 -23.95 16 14 C 0.02 0.82 4.84 86.47 0.42 1.24 16 15 C 0.00 -0.11 5.52 86.46 0.48 0.37 16 16 N -0.50 -17.83 4.84 -719.19 -3.48 -21.31 16 17 C 0.03 0.85 9.28 127.69 1.18 2.03 16 18 C 0.05 1.95 4.14 38.25 0.16 2.11 16 19 C -0.12 -4.11 9.24 22.46 0.21 -3.90 16 20 C -0.14 -4.14 10.04 22.23 0.22 -3.92 16 21 C -0.13 -4.19 10.04 22.23 0.22 -3.97 16 22 C -0.13 -5.22 9.52 22.46 0.21 -5.01 16 23 C 0.09 3.94 3.99 38.26 0.15 4.10 16 24 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.06 2.05 6.68 -2.39 -0.02 2.03 16 26 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.05 2.02 5.99 -2.38 -0.01 2.01 16 28 H 0.07 3.50 6.05 -2.39 -0.01 3.49 16 29 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 30 H 0.10 3.49 4.56 -2.39 -0.01 3.48 16 31 H 0.07 2.34 6.61 -2.39 -0.02 2.32 16 32 H 0.10 4.43 4.36 -2.39 -0.01 4.42 16 33 H 0.09 2.82 7.97 -2.39 -0.02 2.80 16 34 H 0.03 0.75 6.66 -2.39 -0.02 0.73 16 35 H 0.08 1.88 7.61 -2.39 -0.02 1.86 16 36 H 0.09 1.94 8.09 -2.39 -0.02 1.92 16 37 H 0.13 3.87 8.03 -2.91 -0.02 3.85 16 38 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 39 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 40 H 0.11 4.32 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -59.64 298.54 1.79 -57.85 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 1.03 Total: 23.24 kcal Atomic # 6 Polarization: -36.04 SS G_CDS: 4.76 Total: -31.28 kcal Atomic # 7 Polarization: -89.97 SS G_CDS: -6.03 Total: -96.00 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -59.64 1.79 -57.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111460245.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.158 kcal (2) G-P(sol) polarization free energy of solvation -59.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds