Wall clock time and date at job start Mon Mar 30 2020 07:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46954 * 2 1 4 4 H 1.08994 * 109.46847 * 305.65580 * 3 2 1 5 5 C 1.50710 * 109.46864 * 185.66205 * 3 2 1 6 6 H 1.07995 * 119.99730 * 245.49330 * 5 3 2 7 7 C 1.37875 * 119.99790 * 65.49058 * 5 3 2 8 8 N 1.31514 * 120.00060 * 8.24506 * 7 5 3 9 9 Si 1.86803 * 119.99770 * 188.23776 * 7 5 3 10 10 H 1.48502 * 109.47150 * 270.00316 * 9 7 5 11 11 H 1.48497 * 109.46949 * 30.00627 * 9 7 5 12 12 H 1.48500 * 109.46918 * 150.00727 * 9 7 5 13 13 N 1.46890 * 109.47462 * 65.66094 * 3 2 1 14 14 C 1.46718 * 110.99865 * 48.79075 * 13 3 2 15 15 C 1.53381 * 108.25769 * 185.84680 * 14 13 3 16 16 N 1.46725 * 108.24962 * 66.81755 * 15 14 13 17 17 C 1.46897 * 110.99865 * 185.82425 * 16 15 14 18 18 C 1.39936 * 112.11239 * 310.59055 * 16 15 14 19 19 C 1.39223 * 117.92487 * 197.67178 * 18 16 15 20 20 C 1.38045 * 120.39776 * 180.22824 * 19 18 16 21 21 C 1.38257 * 120.02471 * 0.02562 * 20 19 18 22 22 C 1.38039 * 120.02072 * 359.88206 * 21 20 19 23 23 C 1.38955 * 122.49783 * 17.73465 * 18 16 15 24 24 H 1.09001 * 109.47372 * 60.00559 * 1 2 3 25 25 H 1.09003 * 109.47610 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47718 * 300.00064 * 1 2 3 27 27 H 1.09000 * 109.47180 * 239.99433 * 2 1 3 28 28 H 1.09001 * 109.47115 * 119.99927 * 2 1 3 29 29 H 0.97000 * 120.00666 * 355.97017 * 8 7 5 30 30 H 1.08996 * 109.70827 * 305.53676 * 14 13 3 31 31 H 1.09000 * 109.71069 * 66.11869 * 14 13 3 32 32 H 1.08996 * 109.70832 * 186.49919 * 15 14 13 33 33 H 1.08995 * 109.71052 * 307.08725 * 15 14 13 34 34 H 1.08994 * 109.47846 * 67.32202 * 17 16 15 35 35 H 1.09002 * 109.47225 * 187.32703 * 17 16 15 36 36 H 1.09001 * 109.46975 * 307.32253 * 17 16 15 37 37 H 1.07998 * 119.79929 * 0.24924 * 19 18 16 38 38 H 1.08000 * 119.98477 * 180.02562 * 20 19 18 39 39 H 1.07993 * 119.98525 * 179.89751 * 21 20 19 40 40 H 1.08004 * 119.79875 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5962 1.9847 -0.8350 5 6 3.5405 1.4448 -0.1402 6 1 4.1578 1.8054 0.6692 7 6 4.1250 0.9865 -1.3018 8 7 3.3777 0.7004 -2.3455 9 14 5.9784 0.7721 -1.3931 10 1 6.5996 2.0332 -1.8718 11 1 6.5054 0.4413 -0.0448 12 1 6.3035 -0.3285 -2.3355 13 7 1.6650 2.0945 1.2618 14 6 2.0155 1.2541 2.4122 15 6 1.4678 1.9219 3.6798 16 7 0.0022 1.8876 3.6205 17 6 -0.5875 2.6343 4.7397 18 6 -0.4865 2.3527 2.3945 19 6 -1.8253 2.7286 2.3266 20 6 -2.3619 3.1903 1.1415 21 6 -1.5693 3.2814 0.0123 22 6 -0.2403 2.9129 0.0698 23 6 0.3111 2.4480 1.2607 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3635 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.4115 0.7557 -2.2801 30 1 1.5698 0.2663 2.2953 31 1 3.0993 1.1621 2.4836 32 1 1.8128 1.3789 4.5596 33 1 1.8102 2.9555 3.7280 34 1 -0.3678 3.6956 4.6243 35 1 -1.6673 2.4855 4.7470 36 1 -0.1651 2.2758 5.6784 37 1 -2.4477 2.6589 3.2064 38 1 -3.4012 3.4806 1.0964 39 1 -1.9902 3.6411 -0.9150 40 1 0.3757 2.9859 -0.8144 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111460248.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:04 Heat of formation + Delta-G solvation = 54.914004 kcal Electronic energy + Delta-G solvation = -20802.840401 eV Core-core repulsion = 18004.004163 eV Total energy + Delta-G solvation = -2798.836238 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.75345 -37.02930 -36.46056 -33.24865 -31.13536 -30.08442 -29.65035 -28.50541 -25.91589 -24.36962 -23.36003 -23.06232 -21.60842 -19.75848 -18.98201 -17.24089 -16.97751 -15.84797 -15.74604 -14.77889 -14.25724 -13.97990 -13.92524 -13.74659 -13.69638 -13.10696 -12.68336 -12.41343 -12.18775 -11.88145 -11.81140 -11.66023 -11.38684 -11.26751 -10.89048 -10.86355 -10.63173 -10.37316 -10.20954 -10.06990 -9.84291 -9.56340 -9.19576 -8.51913 -8.26772 -7.70571 -6.64336 -6.42004 -4.13236 1.82593 1.92688 3.40455 3.43393 3.59041 3.88537 4.26852 4.45716 4.71034 5.03556 5.11002 5.27674 5.34517 5.42615 5.45767 5.62765 5.66092 5.71777 5.80636 5.84833 5.97781 6.00544 6.04926 6.20615 6.21913 6.35427 6.39611 6.46907 6.61657 6.72253 6.79628 6.86282 6.98410 7.10876 7.12654 7.27178 7.33621 7.53537 7.86166 7.89799 8.27149 8.48850 8.78888 9.55862 10.95159 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.026027 B = 0.007274 C = 0.006291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.552710 B = 3848.521043 C = 4449.672543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.153 4.153 3 C 0.204 3.796 4 H 0.048 0.952 5 C -0.589 4.589 6 H 0.057 0.943 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 1.071 2.929 10 H -0.288 1.288 11 H -0.288 1.288 12 H -0.285 1.285 13 N -0.475 5.475 14 C 0.055 3.945 15 C 0.049 3.951 16 N -0.493 5.493 17 C 0.027 3.973 18 C 0.052 3.948 19 C -0.132 4.132 20 C -0.148 4.148 21 C -0.118 4.118 22 C -0.141 4.141 23 C 0.122 3.878 24 H 0.048 0.952 25 H 0.034 0.966 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.271 0.729 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.050 0.950 34 H 0.033 0.967 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.117 0.883 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.008 2.578 10.070 13.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.192 4.192 3 C 0.100 3.900 4 H 0.065 0.935 5 C -0.628 4.628 6 H 0.075 0.925 7 C -0.182 4.182 8 N -0.545 5.545 9 Si 0.900 3.100 10 H -0.215 1.215 11 H -0.215 1.215 12 H -0.210 1.210 13 N -0.187 5.187 14 C -0.072 4.072 15 C -0.078 4.078 16 N -0.209 5.209 17 C -0.120 4.120 18 C -0.048 4.048 19 C -0.153 4.153 20 C -0.168 4.168 21 C -0.138 4.138 22 C -0.162 4.162 23 C 0.019 3.981 24 H 0.067 0.933 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.103 0.897 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.135 0.865 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.467 2.039 9.209 11.436 hybrid contribution -1.460 0.505 0.911 1.794 sum -7.927 2.544 10.120 13.105 Atomic orbital electron populations 1.22184 0.98046 0.99940 1.01564 1.22315 0.93237 1.01482 1.02192 1.19766 0.97020 0.88467 0.84779 0.93477 1.21866 0.90017 1.46319 1.04573 0.92494 1.25755 1.06989 0.93750 0.91722 1.70777 1.07374 1.46481 1.29904 0.83503 0.74110 0.76916 0.75487 1.21465 1.21456 1.21021 1.58995 1.11531 1.42041 1.06118 1.22299 1.01953 0.95275 0.87653 1.22411 0.85442 1.00635 0.99338 1.58947 1.08002 1.52352 1.01553 1.22476 1.00579 0.95879 0.93018 1.18565 0.93534 1.02409 0.90288 1.20769 0.93439 1.02651 0.98478 1.20650 0.99233 1.03886 0.93032 1.20807 0.93807 1.01134 0.98031 1.21112 0.95481 1.02628 0.97020 1.18910 0.88252 0.97941 0.93001 0.93336 0.94687 0.92350 0.90870 0.92968 0.91749 0.92146 0.88686 0.89720 0.93194 0.94807 0.90858 0.91203 0.86485 0.86945 0.86757 0.85237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.26 8.41 37.15 0.31 -2.95 16 2 C -0.15 -3.49 4.59 -26.73 -0.12 -3.61 16 3 C 0.20 4.90 1.41 -68.86 -0.10 4.81 16 4 H 0.05 1.23 4.77 -51.93 -0.25 0.98 16 5 C -0.59 -15.78 8.12 -34.44 -0.28 -16.06 16 6 H 0.06 1.54 7.29 -52.49 -0.38 1.16 16 7 C 0.02 0.61 5.17 -17.82 -0.09 0.52 16 8 N -0.91 -26.22 13.05 55.43 0.72 -25.49 16 9 Si 1.07 24.51 29.91 -169.99 -5.08 19.43 16 10 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.48 -10.27 4.53 -164.61 -0.75 -11.02 16 14 C 0.05 1.06 4.93 -3.73 -0.02 1.04 16 15 C 0.05 0.77 5.70 -3.72 -0.02 0.75 16 16 N -0.49 -7.84 4.88 -178.67 -0.87 -8.71 16 17 C 0.03 0.33 8.93 60.06 0.54 0.87 16 18 C 0.05 0.92 4.89 -83.53 -0.41 0.51 16 19 C -0.13 -2.06 9.05 -39.29 -0.36 -2.42 16 20 C -0.15 -2.23 10.04 -39.65 -0.40 -2.62 16 21 C -0.12 -1.94 10.04 -39.65 -0.40 -2.34 16 22 C -0.14 -2.72 7.15 -39.29 -0.28 -3.01 16 23 C 0.12 2.42 3.37 -83.53 -0.28 2.14 16 24 H 0.05 0.98 7.42 -51.93 -0.39 0.60 16 25 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 1.19 4.62 -51.93 -0.24 0.95 16 27 H 0.07 1.84 6.29 -51.93 -0.33 1.51 16 28 H 0.05 1.18 5.84 -51.93 -0.30 0.87 16 29 H 0.27 7.76 5.98 -40.82 -0.24 7.52 16 30 H 0.06 1.21 5.67 -51.93 -0.29 0.91 16 31 H 0.09 1.87 7.29 -51.93 -0.38 1.49 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.05 0.82 8.13 -51.93 -0.42 0.40 16 34 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.80 6.24 -51.93 -0.32 0.48 16 36 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 37 H 0.12 1.54 6.08 -52.49 -0.32 1.22 16 38 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 39 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 40 H 0.13 2.70 5.87 -52.48 -0.31 2.39 16 LS Contribution 295.63 15.07 4.46 4.46 Total: -1.00 -28.97 295.63 -8.94 -37.90 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -5.51 Total: 5.80 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: -1.91 Total: -22.37 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: -0.90 Total: -45.22 kcal Atomic # 14 Polarization: 24.51 SS G_CDS: -5.08 Total: 19.43 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.97 -8.94 -37.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111460248.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.818 kcal (2) G-P(sol) polarization free energy of solvation -28.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds