Wall clock time and date at job start Mon Mar 30 2020 07:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46954 * 2 1 4 4 H 1.08994 * 109.46847 * 305.65580 * 3 2 1 5 5 C 1.50710 * 109.46864 * 185.66205 * 3 2 1 6 6 H 1.07995 * 119.99730 * 245.49330 * 5 3 2 7 7 C 1.37875 * 119.99790 * 65.49058 * 5 3 2 8 8 N 1.31514 * 120.00060 * 8.24506 * 7 5 3 9 9 Si 1.86803 * 119.99770 * 188.23776 * 7 5 3 10 10 H 1.48502 * 109.47150 * 270.00316 * 9 7 5 11 11 H 1.48497 * 109.46949 * 30.00627 * 9 7 5 12 12 H 1.48500 * 109.46918 * 150.00727 * 9 7 5 13 13 N 1.46890 * 109.47462 * 65.66094 * 3 2 1 14 14 C 1.46718 * 110.99865 * 48.79075 * 13 3 2 15 15 C 1.53381 * 108.25769 * 185.84680 * 14 13 3 16 16 N 1.46725 * 108.24962 * 66.81755 * 15 14 13 17 17 C 1.46897 * 110.99865 * 185.82425 * 16 15 14 18 18 C 1.39936 * 112.11239 * 310.59055 * 16 15 14 19 19 C 1.39223 * 117.92487 * 197.67178 * 18 16 15 20 20 C 1.38045 * 120.39776 * 180.22824 * 19 18 16 21 21 C 1.38257 * 120.02471 * 0.02562 * 20 19 18 22 22 C 1.38039 * 120.02072 * 359.88206 * 21 20 19 23 23 C 1.38955 * 122.49783 * 17.73465 * 18 16 15 24 24 H 1.09001 * 109.47372 * 60.00559 * 1 2 3 25 25 H 1.09003 * 109.47610 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47718 * 300.00064 * 1 2 3 27 27 H 1.09000 * 109.47180 * 239.99433 * 2 1 3 28 28 H 1.09001 * 109.47115 * 119.99927 * 2 1 3 29 29 H 0.97000 * 120.00666 * 355.97017 * 8 7 5 30 30 H 1.08996 * 109.70827 * 305.53676 * 14 13 3 31 31 H 1.09000 * 109.71069 * 66.11869 * 14 13 3 32 32 H 1.08996 * 109.70832 * 186.49919 * 15 14 13 33 33 H 1.08995 * 109.71052 * 307.08725 * 15 14 13 34 34 H 1.08994 * 109.47846 * 67.32202 * 17 16 15 35 35 H 1.09002 * 109.47225 * 187.32703 * 17 16 15 36 36 H 1.09001 * 109.46975 * 307.32253 * 17 16 15 37 37 H 1.07998 * 119.79929 * 0.24924 * 19 18 16 38 38 H 1.08000 * 119.98477 * 180.02562 * 20 19 18 39 39 H 1.07993 * 119.98525 * 179.89751 * 21 20 19 40 40 H 1.08004 * 119.79875 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5962 1.9847 -0.8350 5 6 3.5405 1.4448 -0.1402 6 1 4.1578 1.8054 0.6692 7 6 4.1250 0.9865 -1.3018 8 7 3.3777 0.7004 -2.3455 9 14 5.9784 0.7721 -1.3931 10 1 6.5996 2.0332 -1.8718 11 1 6.5054 0.4413 -0.0448 12 1 6.3035 -0.3285 -2.3355 13 7 1.6650 2.0945 1.2618 14 6 2.0155 1.2541 2.4122 15 6 1.4678 1.9219 3.6798 16 7 0.0022 1.8876 3.6205 17 6 -0.5875 2.6343 4.7397 18 6 -0.4865 2.3527 2.3945 19 6 -1.8253 2.7286 2.3266 20 6 -2.3619 3.1903 1.1415 21 6 -1.5693 3.2814 0.0123 22 6 -0.2403 2.9129 0.0698 23 6 0.3111 2.4480 1.2607 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3635 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.4115 0.7557 -2.2801 30 1 1.5698 0.2663 2.2953 31 1 3.0993 1.1621 2.4836 32 1 1.8128 1.3789 4.5596 33 1 1.8102 2.9555 3.7280 34 1 -0.3678 3.6956 4.6243 35 1 -1.6673 2.4855 4.7470 36 1 -0.1651 2.2758 5.6784 37 1 -2.4477 2.6589 3.2064 38 1 -3.4012 3.4806 1.0964 39 1 -1.9902 3.6411 -0.9150 40 1 0.3757 2.9859 -0.8144 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111460248.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:04 Heat of formation + Delta-G solvation = 36.906981 kcal Electronic energy + Delta-G solvation = -20803.621244 eV Core-core repulsion = 18004.004163 eV Total energy + Delta-G solvation = -2799.617081 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.17457 -38.58278 -37.73158 -35.12245 -32.92890 -31.44677 -30.98016 -29.98855 -27.58290 -25.70555 -24.94178 -24.70790 -23.11284 -21.36194 -20.43951 -18.91869 -18.63553 -17.19387 -17.14983 -16.38877 -15.69105 -15.48985 -15.39247 -15.23953 -15.14409 -14.51548 -14.32753 -13.86940 -13.78598 -13.52444 -13.17301 -13.04398 -12.81879 -12.68323 -12.57447 -12.44620 -12.32035 -11.97185 -11.89911 -11.77796 -11.47351 -10.99036 -10.74823 -10.39608 -10.26031 -9.04442 -8.61354 -8.09107 -6.31916 0.50930 0.58225 1.52582 1.60570 1.78253 2.53926 2.64682 2.95532 3.14280 3.26549 3.77578 3.82054 4.05922 4.17894 4.26794 4.28657 4.31658 4.40316 4.45956 4.52649 4.53469 4.60211 4.69016 4.78178 4.80144 4.87374 4.95384 5.01582 5.04222 5.08969 5.19048 5.24375 5.41172 5.51641 5.72670 5.83606 5.87611 5.97661 6.11754 6.28973 6.43068 6.55060 6.74660 7.45058 8.76528 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.026027 B = 0.007274 C = 0.006291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.552710 B = 3848.521043 C = 4449.672543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.211 3.789 4 H 0.020 0.980 5 C -0.598 4.598 6 H 0.048 0.952 7 C -0.025 4.025 8 N -0.933 5.933 9 Si 1.115 2.885 10 H -0.278 1.278 11 H -0.271 1.271 12 H -0.284 1.284 13 N -0.491 5.491 14 C 0.055 3.945 15 C 0.059 3.941 16 N -0.500 5.500 17 C 0.025 3.975 18 C 0.049 3.951 19 C -0.131 4.131 20 C -0.133 4.133 21 C -0.123 4.123 22 C -0.161 4.161 23 C 0.089 3.911 24 H 0.041 0.959 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.043 0.957 28 H 0.051 0.949 29 H 0.260 0.740 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.043 0.957 34 H 0.031 0.969 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.134 0.866 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.756 2.894 12.431 16.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.180 4.180 3 C 0.105 3.895 4 H 0.038 0.962 5 C -0.636 4.636 6 H 0.066 0.934 7 C -0.223 4.223 8 N -0.571 5.571 9 Si 0.938 3.062 10 H -0.204 1.204 11 H -0.196 1.196 12 H -0.210 1.210 13 N -0.204 5.204 14 C -0.072 4.072 15 C -0.068 4.068 16 N -0.215 5.215 17 C -0.120 4.120 18 C -0.051 4.051 19 C -0.152 4.152 20 C -0.153 4.153 21 C -0.142 4.142 22 C -0.183 4.183 23 C -0.012 4.012 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.134 0.866 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.168 0.832 38 H 0.169 0.831 39 H 0.152 0.848 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.248 2.374 11.604 14.434 hybrid contribution -1.044 0.460 0.231 1.164 sum -9.292 2.834 11.835 15.312 Atomic orbital electron populations 1.22016 0.95904 1.00810 1.01437 1.22101 0.95064 1.00330 1.00513 1.19453 0.95331 0.88913 0.85769 0.96201 1.22175 0.91747 1.45539 1.04139 0.93390 1.27082 1.10611 0.93154 0.91494 1.70879 1.06908 1.48488 1.30800 0.82947 0.69755 0.77188 0.76346 1.20413 1.19584 1.20952 1.58946 1.13585 1.42510 1.05370 1.22272 1.01189 0.94919 0.88801 1.22357 0.85826 1.00229 0.98413 1.58995 1.07719 1.52938 1.01873 1.22624 1.01608 0.95409 0.92364 1.18816 0.94255 1.01780 0.90297 1.21188 0.92726 1.01367 0.99912 1.21105 1.00700 1.01565 0.91893 1.21067 0.92622 1.00742 0.99800 1.21023 0.96736 1.04360 0.96132 1.18998 0.87856 1.00014 0.94375 0.93994 0.93106 0.91913 0.93855 0.93035 0.92983 0.93318 0.90159 0.86599 0.93833 0.94985 0.89048 0.88907 0.83216 0.83068 0.84802 0.88467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.98 8.41 71.98 0.61 -5.37 16 2 C -0.14 -6.71 4.59 30.59 0.14 -6.57 16 3 C 0.21 10.69 1.41 44.17 0.06 10.75 16 4 H 0.02 1.14 4.77 -2.39 -0.01 1.12 16 5 C -0.60 -33.41 8.12 25.60 0.21 -33.20 16 6 H 0.05 2.70 7.29 -2.91 -0.02 2.68 16 7 C -0.02 -1.39 5.17 84.65 0.44 -0.95 16 8 N -0.93 -56.16 13.05 21.45 0.28 -55.88 16 9 Si 1.12 50.27 29.91 68.60 2.05 52.32 16 10 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 N -0.49 -21.96 4.53 -674.69 -3.06 -25.02 16 14 C 0.05 2.13 4.93 86.47 0.43 2.56 16 15 C 0.06 1.77 5.70 86.46 0.49 2.27 16 16 N -0.50 -14.51 4.88 -719.18 -3.51 -18.02 16 17 C 0.03 0.51 8.93 127.69 1.14 1.65 16 18 C 0.05 1.62 4.89 38.26 0.19 1.81 16 19 C -0.13 -3.58 9.05 22.46 0.20 -3.38 16 20 C -0.13 -3.50 10.04 22.23 0.22 -3.28 16 21 C -0.12 -3.86 10.04 22.23 0.22 -3.63 16 22 C -0.16 -6.38 7.15 22.46 0.16 -6.22 16 23 C 0.09 3.57 3.37 38.26 0.13 3.70 16 24 H 0.04 1.75 7.42 -2.39 -0.02 1.73 16 25 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.06 2.55 4.62 -2.39 -0.01 2.54 16 27 H 0.04 2.29 6.29 -2.39 -0.02 2.28 16 28 H 0.05 2.41 5.84 -2.39 -0.01 2.39 16 29 H 0.26 15.80 5.98 -92.71 -0.55 15.25 16 30 H 0.05 1.97 5.67 -2.39 -0.01 1.96 16 31 H 0.08 3.26 7.29 -2.39 -0.02 3.24 16 32 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.04 1.38 8.13 -2.39 -0.02 1.36 16 34 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.09 1.52 6.24 -2.39 -0.01 1.51 16 36 H 0.09 1.47 8.11 -2.39 -0.02 1.45 16 37 H 0.15 3.10 6.08 -2.91 -0.02 3.09 16 38 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 39 H 0.13 3.56 8.06 -2.91 -0.02 3.54 16 40 H 0.10 4.40 5.87 -2.91 -0.02 4.39 16 Total: -1.00 -65.45 295.63 1.65 -63.80 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 1.25 Total: 22.67 kcal Atomic # 6 Polarization: -44.51 SS G_CDS: 4.64 Total: -39.87 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -6.29 Total: -98.92 kcal Atomic # 14 Polarization: 50.27 SS G_CDS: 2.05 Total: 52.32 kcal Total: -65.45 1.65 -63.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111460248.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.703 kcal (2) G-P(sol) polarization free energy of solvation -65.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds