Wall clock time and date at job start Mon Mar 30 2020 07:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53117 * 109.51926 * 2 1 4 4 C 1.53035 * 109.27725 * 182.43434 * 3 2 1 5 5 N 1.46849 * 109.52053 * 59.18196 * 4 3 2 6 6 C 1.39854 * 111.00161 * 174.16188 * 5 4 3 7 7 C 1.39605 * 119.83680 * 359.72204 * 6 5 4 8 8 C 1.38057 * 120.54825 * 179.76527 * 7 6 5 9 9 C 1.38736 * 120.21879 * 0.51048 * 8 7 6 10 10 N 1.38867 * 120.16275 * 179.72434 * 9 8 7 11 11 C 1.41563 * 119.67677 * 359.74421 * 9 8 7 12 12 C 1.41026 * 120.27029 * 180.02562 * 11 9 8 13 13 H 1.08003 * 120.00174 * 25.74114 * 12 11 9 14 14 C 1.39889 * 119.99954 * 205.74435 * 12 11 9 15 15 N 1.30895 * 119.99915 * 15.07890 * 14 12 11 16 16 Si 1.86800 * 119.99710 * 195.07779 * 14 12 11 17 17 H 1.48496 * 109.47462 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.46957 * 120.00163 * 16 14 12 19 19 H 1.48507 * 109.47072 * 239.99782 * 16 14 12 20 20 C 1.38008 * 119.84272 * 179.97438 * 6 5 4 21 21 C 1.46850 * 111.19809 * 298.25544 * 5 4 3 22 22 C 1.53037 * 109.52344 * 61.74000 * 21 5 4 23 23 H 1.08998 * 109.46805 * 60.00950 * 1 2 3 24 24 H 1.09007 * 109.46770 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47342 * 300.00208 * 1 2 3 26 26 H 1.08999 * 109.57122 * 120.15441 * 2 1 3 27 27 H 1.09002 * 109.50517 * 62.49643 * 3 2 1 28 28 H 1.08994 * 109.50575 * 302.37902 * 3 2 1 29 29 H 1.08994 * 109.46582 * 299.16358 * 4 3 2 30 30 H 1.08998 * 109.46575 * 179.19209 * 4 3 2 31 31 H 1.08002 * 119.72449 * 359.97438 * 7 6 5 32 32 H 1.07992 * 119.89161 * 180.25632 * 8 7 6 33 33 H 0.97005 * 119.99943 * 186.67529 * 10 9 8 34 34 H 0.97002 * 120.00223 * 6.67686 * 10 9 8 35 35 H 0.97009 * 119.99878 * 174.96155 * 15 14 12 36 36 H 1.07993 * 120.11161 * 359.95423 * 20 6 5 37 37 H 1.08994 * 109.46728 * 181.76144 * 21 5 4 38 38 H 1.09001 * 109.45912 * 301.72961 * 21 5 4 39 39 H 1.08997 * 109.50449 * 180.88008 * 22 21 5 40 40 H 1.09007 * 109.50017 * 60.76263 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0417 1.4432 0.0000 4 6 3.5708 1.4371 -0.0614 5 7 4.0103 0.7431 -1.2786 6 6 5.3972 0.8334 -1.4340 7 6 6.1582 1.5263 -0.4907 8 6 7.5288 1.6205 -0.6271 9 6 8.1644 1.0346 -1.7121 10 7 9.5425 1.1349 -1.8512 11 6 7.4013 0.3342 -2.6771 12 6 8.0346 -0.2667 -3.7846 13 1 9.0700 -0.5668 -3.7175 14 6 7.3219 -0.4741 -4.9703 15 7 6.1822 0.1397 -5.1646 16 14 7.9966 -1.6268 -6.2762 17 1 9.2913 -2.1909 -5.8174 18 1 7.0303 -2.7300 -6.5097 19 1 8.2047 -0.8753 -7.5401 20 6 6.0064 0.2416 -2.5218 21 6 3.5709 -0.6582 -1.2788 22 6 2.0418 -0.7147 -1.2536 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8952 -0.5159 0.8880 27 1 1.7160 1.9447 0.9113 28 1 1.6447 1.9700 -0.8677 29 1 3.9674 0.9223 0.8136 30 1 3.9377 2.4634 -0.0760 31 1 5.6710 1.9897 0.3545 32 1 8.1075 2.1556 0.1111 33 1 9.9736 0.8098 -2.6570 34 1 10.0740 1.5301 -1.1425 35 1 5.7239 0.0537 -6.0153 36 1 5.4141 -0.2908 -3.2512 37 1 3.9379 -1.1538 -2.1775 38 1 3.9675 -1.1632 -0.3980 39 1 1.7163 -1.7548 -1.2381 40 1 1.6448 -0.2218 -2.1411 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127164684.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:42 Heat of formation + Delta-G solvation = 12.881332 kcal Electronic energy + Delta-G solvation = -19734.501869 eV Core-core repulsion = 16933.842958 eV Total energy + Delta-G solvation = -2800.658911 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.28918 -37.31242 -34.68421 -33.49782 -31.79125 -30.71189 -29.32524 -28.22491 -25.90811 -24.78385 -22.90349 -22.07309 -20.64139 -19.78675 -19.08994 -17.21262 -15.96945 -15.57920 -15.28656 -14.66925 -14.33758 -14.24860 -13.90133 -13.74277 -13.18737 -12.68668 -12.40030 -12.24741 -12.07330 -11.97046 -11.66978 -11.49305 -11.23912 -11.03417 -10.99610 -10.77330 -10.49540 -10.39736 -10.12603 -9.96057 -9.81149 -9.39094 -9.28347 -9.08971 -7.83678 -7.25169 -6.58324 -5.87547 -4.09289 2.86249 3.13424 3.17398 3.22954 3.27196 4.02151 4.61315 4.77950 4.98954 5.04999 5.08885 5.34076 5.58153 5.66394 5.71471 5.79194 5.81681 5.86612 5.92561 5.98071 6.18735 6.22660 6.26737 6.31459 6.39172 6.45405 6.52689 6.57275 6.70167 7.07811 7.11483 7.29209 7.38699 7.62600 7.78207 7.82675 8.06954 8.34635 8.40982 8.71725 8.89254 8.94587 9.18342 9.25515 10.37493 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.020618 B = 0.006307 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.705602 B = 4438.490587 C = 5572.697841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.112 4.112 4 C 0.058 3.942 5 N -0.480 5.480 6 C 0.070 3.930 7 C -0.233 4.233 8 C -0.167 4.167 9 C 0.104 3.896 10 N -0.887 5.887 11 C 0.075 3.925 12 C -0.464 4.464 13 H 0.072 0.928 14 C 0.074 3.926 15 N -0.797 5.797 16 Si 0.903 3.097 17 H -0.264 1.264 18 H -0.274 1.274 19 H -0.277 1.277 20 C -0.148 4.148 21 C 0.061 3.939 22 C -0.112 4.112 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.032 0.968 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.390 0.610 34 H 0.375 0.625 35 H 0.276 0.724 36 H 0.126 0.874 37 H 0.081 0.919 38 H 0.028 0.972 39 H 0.060 0.940 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.131 -0.864 6.390 8.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 C -0.150 4.150 4 C -0.070 4.070 5 N -0.197 5.197 6 C -0.026 4.026 7 C -0.256 4.256 8 C -0.191 4.191 9 C 0.003 3.997 10 N -0.429 5.429 11 C 0.070 3.930 12 C -0.495 4.495 13 H 0.090 0.910 14 C -0.142 4.142 15 N -0.424 5.424 16 Si 0.729 3.271 17 H -0.188 1.188 18 H -0.200 1.200 19 H -0.203 1.203 20 C -0.170 4.170 21 C -0.065 4.065 22 C -0.149 4.149 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.050 0.950 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.218 0.782 34 H 0.200 0.800 35 H 0.087 0.913 36 H 0.144 0.856 37 H 0.099 0.901 38 H 0.047 0.953 39 H 0.079 0.921 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.718 -0.685 5.828 8.920 hybrid contribution 1.022 -0.644 -0.080 1.211 sum -5.695 -1.330 5.748 8.200 Atomic orbital electron populations 1.21809 0.95584 1.01252 1.01473 1.21188 0.95074 0.96604 0.98417 1.21681 0.95590 0.96142 1.01543 1.22086 0.94324 0.99517 0.91051 1.59257 1.12079 1.13047 1.35343 1.18526 0.85580 1.02109 0.96416 1.20249 0.93302 1.11438 1.00563 1.19800 0.94106 1.06238 0.98965 1.17962 0.83984 1.00079 0.97703 1.41874 1.04762 1.73531 1.22702 1.17116 0.91554 0.92272 0.92044 1.19168 0.98077 1.35878 0.96410 0.91003 1.25781 0.94217 0.94802 0.99379 1.69853 1.14138 1.34366 1.24040 0.86351 0.79851 0.80715 0.80227 1.18779 1.19983 1.20269 1.20739 0.94409 1.05142 0.96753 1.22121 0.94345 0.88851 1.01224 1.21677 0.95588 0.99632 0.98039 0.92673 0.93039 0.93100 0.91831 0.92183 0.91284 0.95021 0.90628 0.89063 0.89677 0.78156 0.79995 0.91294 0.85618 0.90077 0.95336 0.92090 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.20 37.16 0.34 -1.21 16 2 C -0.09 -1.23 2.79 -90.50 -0.25 -1.48 16 3 C -0.11 -1.57 5.38 -26.65 -0.14 -1.71 16 4 C 0.06 1.00 4.14 -3.83 -0.02 0.98 16 5 N -0.48 -9.84 4.70 -171.16 -0.80 -10.65 16 6 C 0.07 1.66 5.65 -83.77 -0.47 1.19 16 7 C -0.23 -5.34 8.82 -39.14 -0.35 -5.69 16 8 C -0.17 -3.84 9.87 -39.46 -0.39 -4.23 16 9 C 0.10 2.52 6.79 -83.22 -0.56 1.95 16 10 N -0.89 -18.04 8.96 32.75 0.29 -17.75 16 11 C 0.08 2.01 5.58 -106.66 -0.60 1.41 16 12 C -0.46 -12.16 8.45 -37.91 -0.32 -12.48 16 13 H 0.07 1.79 6.78 -52.48 -0.36 1.44 16 14 C 0.07 1.88 5.19 -17.33 -0.09 1.79 16 15 N -0.80 -21.03 10.87 55.55 0.60 -20.42 16 16 Si 0.90 18.93 29.59 -169.99 -5.03 13.90 16 17 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 18 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 19 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 20 C -0.15 -3.88 7.77 -38.75 -0.30 -4.18 16 21 C 0.06 1.12 5.25 -3.83 -0.02 1.10 16 22 C -0.11 -1.65 5.38 -26.65 -0.14 -1.79 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.03 0.55 7.74 -51.93 -0.40 0.14 16 30 H 0.08 1.34 6.95 -51.93 -0.36 0.97 16 31 H 0.09 1.88 5.77 -52.49 -0.30 1.58 16 32 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.39 7.79 7.12 -40.82 -0.29 7.50 16 34 H 0.37 6.43 8.84 -40.82 -0.36 6.07 16 35 H 0.28 6.71 8.31 -40.82 -0.34 6.37 16 36 H 0.13 3.46 5.21 -52.49 -0.27 3.18 16 37 H 0.08 1.63 6.68 -51.93 -0.35 1.29 16 38 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 LS Contribution 310.42 15.07 4.68 4.68 Total: -1.00 -28.05 310.42 -9.63 -37.68 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: -6.06 Total: 16.89 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: -3.31 Total: -24.32 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: 0.09 Total: -48.82 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.05 -9.63 -37.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127164684.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.558 kcal (2) G-P(sol) polarization free energy of solvation -28.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds