Wall clock time and date at job start Mon Mar 30 2020 06:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30895 * 1 3 3 Si 1.86800 * 119.99602 * 2 1 4 4 H 1.48507 * 109.47294 * 269.99953 * 3 2 1 5 5 H 1.48497 * 109.47556 * 30.00089 * 3 2 1 6 6 H 1.48504 * 109.47124 * 150.00082 * 3 2 1 7 7 C 1.39884 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99793 * 196.77677 * 7 2 1 9 9 C 1.41022 * 120.00170 * 16.77409 * 7 2 1 10 10 C 1.40664 * 120.26661 * 26.25968 * 9 7 2 11 11 C 1.38004 * 119.77087 * 179.97438 * 10 9 7 12 12 N 1.39854 * 119.83986 * 179.97438 * 11 10 9 13 13 C 1.47996 * 110.99854 * 168.74863 * 12 11 10 14 14 C 1.50444 * 112.82815 * 191.34785 * 13 12 11 15 15 C 1.54318 * 108.50223 * 93.72438 * 14 13 12 16 16 C 1.45880 * 112.18371 * 281.46861 * 15 14 13 17 17 C 1.54307 * 112.18686 * 61.11751 * 16 15 14 18 18 C 1.48005 * 110.99834 * 40.02935 * 12 11 10 19 19 C 1.39601 * 120.32051 * 359.97438 * 11 10 9 20 20 C 1.38060 * 120.55224 * 0.28879 * 19 11 10 21 21 C 1.38738 * 120.21380 * 359.45445 * 20 19 11 22 22 N 1.38872 * 120.16359 * 180.25120 * 21 20 19 23 23 H 0.97003 * 120.00753 * 4.99130 * 1 2 3 24 24 H 1.08002 * 120.11208 * 359.97438 * 10 9 7 25 25 H 1.09000 * 108.81184 * 312.21016 * 13 12 11 26 26 H 1.08996 * 108.81589 * 70.48673 * 13 12 11 27 27 H 1.09005 * 109.63255 * 334.02638 * 14 13 12 28 28 H 1.08999 * 109.63801 * 213.42910 * 14 13 12 29 29 H 1.08997 * 108.93570 * 160.76603 * 15 14 13 30 30 H 1.09000 * 108.93548 * 42.16333 * 15 14 13 31 31 H 1.08998 * 108.93692 * 300.41696 * 16 15 14 32 32 H 1.08999 * 108.93246 * 181.81470 * 16 15 14 33 33 H 1.09000 * 109.63362 * 161.75813 * 17 16 15 34 34 H 1.09005 * 109.62962 * 41.16821 * 17 16 15 35 35 H 1.08998 * 108.80600 * 205.69954 * 18 12 11 36 36 H 1.08997 * 108.80928 * 323.97386 * 18 12 11 37 37 H 1.07998 * 119.72417 * 180.02562 * 19 11 10 38 38 H 1.07993 * 119.89502 * 179.72712 * 20 19 11 39 39 H 0.96997 * 120.00235 * 186.44018 * 22 21 20 40 40 H 0.97000 * 119.99830 * 6.42922 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4903 2.0466 -1.4001 5 1 1.4403 2.6527 0.7000 6 1 3.5404 1.4403 0.7000 7 6 2.0084 -1.2114 -0.0005 8 1 3.0539 -1.2314 0.2694 9 6 1.3484 -2.4066 -0.3535 10 6 0.2274 -2.3733 -1.2026 11 6 -0.4104 -3.5492 -1.5418 12 7 -1.5254 -3.5177 -2.3855 13 6 -1.8891 -4.8801 -2.8349 14 6 -2.9009 -4.8768 -3.9481 15 6 -2.1484 -4.9353 -5.2941 16 6 -1.6036 -3.6374 -5.6774 17 6 -0.5826 -3.1073 -4.6491 18 6 -1.3361 -2.5377 -3.4783 19 6 0.0520 -4.7699 -1.0470 20 6 1.1477 -4.8175 -0.2084 21 6 1.8092 -3.6497 0.1430 22 7 2.9144 -3.6993 0.9824 23 1 -0.4851 0.8368 -0.0731 24 1 -0.1329 -1.4308 -1.5876 25 1 -0.9887 -5.3884 -3.1798 26 1 -2.2992 -5.4315 -1.9889 27 1 -3.4952 -3.9642 -3.9003 28 1 -3.5516 -5.7463 -3.8543 29 1 -2.8359 -5.2735 -6.0693 30 1 -1.3310 -5.6516 -5.2115 31 1 -2.4216 -2.9223 -5.7648 32 1 -1.1135 -3.7318 -6.6464 33 1 0.0269 -2.3279 -5.1065 34 1 0.0553 -3.9243 -4.3118 35 1 -2.3143 -2.1998 -3.8206 36 1 -0.7865 -1.6802 -3.0901 37 1 -0.4542 -5.6843 -1.3190 38 1 1.4937 -5.7672 0.1718 39 1 3.3182 -2.8772 1.3017 40 1 3.2824 -4.5561 1.2495 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127167114.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:14 Heat of formation + Delta-G solvation = 22.773016 kcal Electronic energy + Delta-G solvation = -20074.142503 eV Core-core repulsion = 17273.912527 eV Total energy + Delta-G solvation = -2800.229975 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.44558 -37.33251 -34.61234 -33.50728 -31.91756 -31.65028 -29.44193 -27.46274 -25.82862 -24.75878 -24.01692 -20.93410 -20.61278 -20.09025 -18.79605 -17.24251 -16.08093 -15.73665 -15.34698 -14.93090 -14.65816 -14.51225 -13.78873 -13.35176 -12.94378 -12.87696 -12.69300 -12.40817 -11.97340 -11.84151 -11.59511 -11.21813 -11.16279 -11.02538 -10.86782 -10.63420 -10.44485 -10.31667 -10.31112 -10.09197 -9.72562 -9.37780 -9.22874 -9.02372 -7.81724 -7.25810 -6.62490 -5.78283 -4.08547 2.88059 3.14275 3.16274 3.23643 3.29197 4.03990 4.55623 4.77457 4.92009 5.00703 5.20703 5.35609 5.44610 5.56070 5.73348 5.79190 5.85614 5.91028 6.01375 6.16533 6.24566 6.30426 6.31853 6.34943 6.44039 6.52966 6.56914 6.58720 6.75276 7.07195 7.13967 7.26946 7.35748 7.63239 7.80007 7.82623 8.04656 8.38338 8.42801 8.71347 8.89543 8.94814 9.19331 9.26957 10.37234 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.020733 B = 0.006873 C = 0.005621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.147959 B = 4072.711405 C = 4979.933774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.077 3.923 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.465 4.465 8 H 0.071 0.929 9 C 0.081 3.919 10 C -0.162 4.162 11 C 0.082 3.918 12 N -0.491 5.491 13 C 0.064 3.936 14 C -0.122 4.122 15 C -0.118 4.118 16 C -0.116 4.116 17 C -0.144 4.144 18 C 0.056 3.944 19 C -0.233 4.233 20 C -0.164 4.164 21 C 0.100 3.900 22 N -0.887 5.887 23 H 0.276 0.724 24 H 0.125 0.875 25 H 0.040 0.960 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.390 0.610 40 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.138 -4.896 -7.362 9.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.139 4.139 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.496 4.496 8 H 0.089 0.911 9 C 0.076 3.924 10 C -0.185 4.185 11 C -0.015 4.015 12 N -0.207 5.207 13 C -0.063 4.063 14 C -0.159 4.159 15 C -0.156 4.156 16 C -0.154 4.154 17 C -0.183 4.183 18 C -0.070 4.070 19 C -0.255 4.255 20 C -0.188 4.188 21 C -0.001 4.001 22 N -0.429 5.429 23 H 0.087 0.913 24 H 0.142 0.858 25 H 0.058 0.942 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.218 0.782 40 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -2.856 -4.550 -7.133 8.930 hybrid contribution 1.193 0.446 -0.099 1.278 sum -1.663 -4.104 -7.232 8.480 Atomic orbital electron populations 1.69877 1.07118 1.28881 1.36517 1.25723 0.94625 1.00590 0.92917 0.86482 0.80445 0.81697 0.79046 1.19625 1.20588 1.18961 1.19121 0.96988 0.91337 1.42202 0.91132 1.17092 0.93354 0.90389 0.91592 1.20735 0.99609 0.95431 1.02688 1.18507 0.90593 0.94134 0.98253 1.59153 1.35748 1.07880 1.17892 1.21799 0.97445 0.90110 0.96909 1.21470 0.98054 1.02351 0.94059 1.20593 0.99654 0.98011 0.97329 1.20560 0.98799 0.97478 0.98540 1.21892 0.98240 1.01263 0.96915 1.22047 0.99549 0.95726 0.89695 1.20081 1.01549 0.94841 1.09058 1.19800 0.99263 0.94848 1.04909 1.17946 0.91724 0.94079 0.96319 1.41865 1.35038 1.08502 1.57509 0.91262 0.85762 0.94213 0.91481 0.90888 0.91639 0.92709 0.92391 0.92289 0.92857 0.91672 0.91464 0.91952 0.89646 0.89122 0.89699 0.78186 0.80026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.93 11.00 55.54 0.61 -20.32 16 2 C 0.08 1.95 5.14 -17.34 -0.09 1.87 16 3 Si 0.90 18.89 29.59 -169.99 -5.03 13.86 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.47 -12.15 8.43 -37.91 -0.32 -12.47 16 8 H 0.07 1.76 6.80 -52.49 -0.36 1.40 16 9 C 0.08 2.14 5.57 -106.66 -0.59 1.55 16 10 C -0.16 -4.18 7.61 -38.75 -0.29 -4.48 16 11 C 0.08 1.93 5.70 -83.77 -0.48 1.45 16 12 N -0.49 -9.90 4.77 -172.33 -0.82 -10.72 16 13 C 0.06 1.08 3.71 -4.50 -0.02 1.06 16 14 C -0.12 -1.64 5.63 -27.32 -0.15 -1.80 16 15 C -0.12 -1.46 5.30 -29.41 -0.16 -1.61 16 16 C -0.12 -1.49 5.30 -29.42 -0.16 -1.65 16 17 C -0.14 -2.28 5.58 -27.33 -0.15 -2.43 16 18 C 0.06 1.02 4.99 -4.49 -0.02 0.99 16 19 C -0.23 -5.30 8.77 -39.14 -0.34 -5.64 16 20 C -0.16 -3.76 9.87 -39.46 -0.39 -4.15 16 21 C 0.10 2.43 6.79 -83.22 -0.56 1.86 16 22 N -0.89 -18.08 8.96 32.75 0.29 -17.79 16 23 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 24 H 0.12 3.32 4.42 -52.49 -0.23 3.09 16 25 H 0.04 0.69 5.56 -51.93 -0.29 0.40 16 26 H 0.07 1.15 7.51 -51.93 -0.39 0.76 16 27 H 0.07 1.03 7.08 -51.93 -0.37 0.66 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.74 7.52 -51.93 -0.39 0.35 16 31 H 0.06 0.73 7.52 -51.93 -0.39 0.34 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 1.18 6.94 -51.93 -0.36 0.82 16 35 H 0.06 1.04 6.59 -51.93 -0.34 0.70 16 36 H 0.09 1.76 5.38 -51.93 -0.28 1.48 16 37 H 0.09 1.87 5.87 -52.49 -0.31 1.56 16 38 H 0.08 1.74 8.06 -52.49 -0.42 1.31 16 39 H 0.39 7.82 7.12 -40.82 -0.29 7.53 16 40 H 0.37 6.44 8.84 -40.82 -0.36 6.08 16 LS Contribution 300.12 15.07 4.52 4.52 Total: -1.00 -27.84 300.12 -9.76 -37.60 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: -5.61 Total: 18.29 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -3.73 Total: -25.45 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: 0.08 Total: -48.82 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.84 -9.76 -37.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127167114.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.374 kcal (2) G-P(sol) polarization free energy of solvation -27.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds