Wall clock time and date at job start Mon Mar 30 2020 06:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30895 * 1 3 3 Si 1.86800 * 119.99602 * 2 1 4 4 H 1.48507 * 109.47294 * 269.99953 * 3 2 1 5 5 H 1.48497 * 109.47556 * 30.00089 * 3 2 1 6 6 H 1.48504 * 109.47124 * 150.00082 * 3 2 1 7 7 C 1.39884 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99793 * 196.77677 * 7 2 1 9 9 C 1.41022 * 120.00170 * 16.77409 * 7 2 1 10 10 C 1.40664 * 120.26661 * 26.25968 * 9 7 2 11 11 C 1.38004 * 119.77087 * 179.97438 * 10 9 7 12 12 N 1.39854 * 119.83986 * 179.97438 * 11 10 9 13 13 C 1.47996 * 110.99854 * 168.74863 * 12 11 10 14 14 C 1.50444 * 112.82815 * 191.34785 * 13 12 11 15 15 C 1.54318 * 108.50223 * 93.72438 * 14 13 12 16 16 C 1.45880 * 112.18371 * 281.46861 * 15 14 13 17 17 C 1.54307 * 112.18686 * 61.11751 * 16 15 14 18 18 C 1.48005 * 110.99834 * 40.02935 * 12 11 10 19 19 C 1.39601 * 120.32051 * 359.97438 * 11 10 9 20 20 C 1.38060 * 120.55224 * 0.28879 * 19 11 10 21 21 C 1.38738 * 120.21380 * 359.45445 * 20 19 11 22 22 N 1.38872 * 120.16359 * 180.25120 * 21 20 19 23 23 H 0.97003 * 120.00753 * 4.99130 * 1 2 3 24 24 H 1.08002 * 120.11208 * 359.97438 * 10 9 7 25 25 H 1.09000 * 108.81184 * 312.21016 * 13 12 11 26 26 H 1.08996 * 108.81589 * 70.48673 * 13 12 11 27 27 H 1.09005 * 109.63255 * 334.02638 * 14 13 12 28 28 H 1.08999 * 109.63801 * 213.42910 * 14 13 12 29 29 H 1.08997 * 108.93570 * 160.76603 * 15 14 13 30 30 H 1.09000 * 108.93548 * 42.16333 * 15 14 13 31 31 H 1.08998 * 108.93692 * 300.41696 * 16 15 14 32 32 H 1.08999 * 108.93246 * 181.81470 * 16 15 14 33 33 H 1.09000 * 109.63362 * 161.75813 * 17 16 15 34 34 H 1.09005 * 109.62962 * 41.16821 * 17 16 15 35 35 H 1.08998 * 108.80600 * 205.69954 * 18 12 11 36 36 H 1.08997 * 108.80928 * 323.97386 * 18 12 11 37 37 H 1.07998 * 119.72417 * 180.02562 * 19 11 10 38 38 H 1.07993 * 119.89502 * 179.72712 * 20 19 11 39 39 H 0.96997 * 120.00235 * 186.44018 * 22 21 20 40 40 H 0.97000 * 119.99830 * 6.42922 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4903 2.0466 -1.4001 5 1 1.4403 2.6527 0.7000 6 1 3.5404 1.4403 0.7000 7 6 2.0084 -1.2114 -0.0005 8 1 3.0539 -1.2314 0.2694 9 6 1.3484 -2.4066 -0.3535 10 6 0.2274 -2.3733 -1.2026 11 6 -0.4104 -3.5492 -1.5418 12 7 -1.5254 -3.5177 -2.3855 13 6 -1.8891 -4.8801 -2.8349 14 6 -2.9009 -4.8768 -3.9481 15 6 -2.1484 -4.9353 -5.2941 16 6 -1.6036 -3.6374 -5.6774 17 6 -0.5826 -3.1073 -4.6491 18 6 -1.3361 -2.5377 -3.4783 19 6 0.0520 -4.7699 -1.0470 20 6 1.1477 -4.8175 -0.2084 21 6 1.8092 -3.6497 0.1430 22 7 2.9144 -3.6993 0.9824 23 1 -0.4851 0.8368 -0.0731 24 1 -0.1329 -1.4308 -1.5876 25 1 -0.9887 -5.3884 -3.1798 26 1 -2.2992 -5.4315 -1.9889 27 1 -3.4952 -3.9642 -3.9003 28 1 -3.5516 -5.7463 -3.8543 29 1 -2.8359 -5.2735 -6.0693 30 1 -1.3310 -5.6516 -5.2115 31 1 -2.4216 -2.9223 -5.7648 32 1 -1.1135 -3.7318 -6.6464 33 1 0.0269 -2.3279 -5.1065 34 1 0.0553 -3.9243 -4.3118 35 1 -2.3143 -2.1998 -3.8206 36 1 -0.7865 -1.6802 -3.0901 37 1 -0.4542 -5.6843 -1.3190 38 1 1.4937 -5.7672 0.1718 39 1 3.3182 -2.8772 1.3017 40 1 3.2824 -4.5561 1.2495 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127167114.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:14 Heat of formation + Delta-G solvation = 6.294618 kcal Electronic energy + Delta-G solvation = -20074.857060 eV Core-core repulsion = 17273.912527 eV Total energy + Delta-G solvation = -2800.944532 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.93956 -38.96540 -36.08763 -35.37015 -33.28412 -33.18837 -31.29875 -29.02871 -27.49365 -26.25589 -25.59594 -22.65573 -22.17277 -21.26868 -20.40013 -19.02392 -17.78382 -17.39741 -16.86878 -16.51304 -16.27718 -15.92912 -15.11125 -14.66513 -14.49906 -14.47475 -14.19650 -13.98846 -13.57659 -13.42021 -13.17452 -12.87007 -12.77501 -12.67484 -12.34352 -12.03703 -11.93791 -11.80526 -11.51036 -11.39770 -11.24880 -11.04467 -10.93217 -10.84005 -9.45531 -9.16330 -8.50775 -7.54831 -6.02841 1.08184 1.38099 1.40837 1.51987 1.55796 2.27161 2.83411 3.14690 3.70132 3.78013 3.85602 3.98564 4.04566 4.22338 4.36021 4.48198 4.52998 4.60907 4.74470 4.80343 4.82547 4.93606 5.03765 5.12271 5.19081 5.25556 5.27628 5.34552 5.36617 5.40580 5.42866 5.49754 5.62017 5.84194 6.00887 6.04692 6.19884 6.51657 6.67925 6.94235 7.00649 7.08375 7.38798 7.60393 8.50671 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.020733 B = 0.006873 C = 0.005621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.147959 B = 4072.711405 C = 4979.933774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.035 3.965 3 Si 0.970 3.030 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.492 4.492 8 H 0.073 0.927 9 C 0.044 3.956 10 C -0.184 4.184 11 C 0.078 3.922 12 N -0.504 5.504 13 C 0.065 3.935 14 C -0.117 4.117 15 C -0.116 4.116 16 C -0.110 4.110 17 C -0.139 4.139 18 C 0.061 3.939 19 C -0.235 4.235 20 C -0.171 4.171 21 C 0.087 3.913 22 N -0.876 5.876 23 H 0.280 0.720 24 H 0.106 0.894 25 H 0.035 0.965 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.046 0.954 35 H 0.078 0.922 36 H 0.051 0.949 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.391 0.609 40 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.465 -5.833 -8.537 10.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.177 4.177 3 Si 0.793 3.207 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.182 1.182 7 C -0.523 4.523 8 H 0.091 0.909 9 C 0.039 3.961 10 C -0.206 4.206 11 C -0.020 4.020 12 N -0.220 5.220 13 C -0.061 4.061 14 C -0.154 4.154 15 C -0.154 4.154 16 C -0.147 4.147 17 C -0.178 4.178 18 C -0.065 4.065 19 C -0.258 4.258 20 C -0.195 4.195 21 C -0.015 4.015 22 N -0.420 5.420 23 H 0.090 0.910 24 H 0.124 0.876 25 H 0.053 0.947 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.108 0.892 29 H 0.101 0.899 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.069 0.931 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.219 0.781 40 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -3.171 -5.516 -8.307 10.464 hybrid contribution 1.239 0.635 0.269 1.418 sum -1.932 -4.881 -8.039 9.601 Atomic orbital electron populations 1.69960 1.08632 1.29869 1.37639 1.26527 0.95309 1.03776 0.92121 0.85381 0.79164 0.77153 0.79052 1.19299 1.20119 1.18170 1.19357 0.97237 0.92226 1.43477 0.90867 1.17491 0.94297 0.91688 0.92600 1.20723 1.00551 0.95686 1.03685 1.18681 0.91028 0.93678 0.98605 1.59098 1.34234 1.10011 1.18684 1.21899 0.98170 0.87954 0.98047 1.21472 0.97348 1.03236 0.93368 1.20584 0.99979 0.97520 0.97289 1.20528 0.98170 0.97944 0.98108 1.21818 0.98630 1.00524 0.96826 1.21991 1.00217 0.94427 0.89870 1.20424 1.01485 0.95410 1.08473 1.20145 0.99112 0.95606 1.04659 1.18128 0.92737 0.93838 0.96806 1.41740 1.34031 1.09556 1.56639 0.90971 0.87610 0.94710 0.91873 0.91381 0.89182 0.89872 0.92748 0.91378 0.90990 0.91522 0.93538 0.90350 0.93051 0.86900 0.87006 0.78073 0.78066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.44 11.00 21.82 0.24 -45.20 16 2 C 0.04 1.83 5.14 85.23 0.44 2.27 16 3 Si 0.97 39.52 29.59 68.60 2.03 41.55 16 4 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 5 H -0.28 -10.93 7.11 99.48 0.71 -10.23 16 6 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 7 C -0.49 -26.46 8.43 23.35 0.20 -26.27 16 8 H 0.07 3.74 6.80 -2.91 -0.02 3.72 16 9 C 0.04 2.43 5.57 -21.18 -0.12 2.31 16 10 C -0.18 -9.90 7.61 22.81 0.17 -9.73 16 11 C 0.08 3.75 5.70 38.13 0.22 3.96 16 12 N -0.50 -20.48 4.77 -699.13 -3.34 -23.81 16 13 C 0.07 2.12 3.71 85.27 0.32 2.43 16 14 C -0.12 -2.84 5.63 30.21 0.17 -2.67 16 15 C -0.12 -2.48 5.30 28.86 0.15 -2.33 16 16 C -0.11 -2.54 5.30 28.85 0.15 -2.38 16 17 C -0.14 -4.34 5.58 30.21 0.17 -4.17 16 18 C 0.06 2.24 4.99 85.26 0.43 2.66 16 19 C -0.24 -10.65 8.77 22.56 0.20 -10.45 16 20 C -0.17 -7.73 9.87 22.35 0.22 -7.51 16 21 C 0.09 4.25 6.79 38.97 0.26 4.52 16 22 N -0.88 -35.40 8.96 -50.30 -0.45 -35.85 16 23 H 0.28 14.07 8.30 -92.71 -0.77 13.30 16 24 H 0.11 6.02 4.42 -2.91 -0.01 6.00 16 25 H 0.03 1.17 5.56 -2.39 -0.01 1.15 16 26 H 0.06 2.07 7.51 -2.39 -0.02 2.05 16 27 H 0.07 1.75 7.08 -2.38 -0.02 1.73 16 28 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.05 1.22 7.52 -2.39 -0.02 1.20 16 31 H 0.07 1.47 7.52 -2.39 -0.02 1.45 16 32 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.05 1.63 6.94 -2.38 -0.02 1.62 16 35 H 0.08 2.58 6.59 -2.39 -0.02 2.57 16 36 H 0.05 2.24 5.38 -2.39 -0.01 2.23 16 37 H 0.11 4.50 5.87 -2.91 -0.02 4.49 16 38 H 0.11 4.35 8.06 -2.91 -0.02 4.33 16 39 H 0.39 15.69 7.12 -92.71 -0.66 15.03 16 40 H 0.39 12.97 8.84 -92.71 -0.82 12.15 16 Total: -1.00 -61.75 300.12 1.05 -60.69 By element: Atomic # 1 Polarization: 50.38 SS G_CDS: -0.41 Total: 49.97 kcal Atomic # 6 Polarization: -50.32 SS G_CDS: 2.98 Total: -47.34 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -3.55 Total: -104.87 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.55 kcal Total: -61.75 1.05 -60.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127167114.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.988 kcal (2) G-P(sol) polarization free energy of solvation -61.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds