Wall clock time and date at job start Mon Mar 30 2020 06:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30897 * 1 3 3 Si 1.86798 * 119.99959 * 2 1 4 4 H 1.48497 * 109.47416 * 274.96647 * 3 2 1 5 5 H 1.48501 * 109.47097 * 34.96314 * 3 2 1 6 6 H 1.48503 * 109.47515 * 154.96520 * 3 2 1 7 7 C 1.39891 * 120.00339 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99887 * 195.34922 * 7 2 1 9 9 C 1.41027 * 119.99739 * 15.35134 * 7 2 1 10 10 C 1.40665 * 120.26777 * 25.54572 * 9 7 2 11 11 C 1.38008 * 119.76843 * 180.02562 * 10 9 7 12 12 N 1.39857 * 119.83719 * 179.97438 * 11 10 9 13 13 C 1.46502 * 119.99719 * 180.02562 * 12 11 10 14 14 C 1.53005 * 109.46870 * 85.00063 * 13 12 11 15 15 C 1.53002 * 109.46792 * 179.97438 * 14 13 12 16 16 C 1.53003 * 109.47317 * 299.99940 * 15 14 13 17 17 C 1.52997 * 109.46569 * 60.00373 * 16 15 14 18 18 C 1.52999 * 109.47341 * 299.99249 * 17 16 15 19 19 C 1.39602 * 120.32312 * 0.26212 * 11 10 9 20 20 C 1.38061 * 120.54339 * 359.47897 * 19 11 10 21 21 C 1.38733 * 120.22255 * 0.51764 * 20 19 11 22 22 N 1.38862 * 120.16305 * 179.71976 * 21 20 19 23 23 H 0.96999 * 120.00012 * 0.02562 * 1 2 3 24 24 H 1.08000 * 120.11605 * 0.05244 * 10 9 7 25 25 H 0.96998 * 120.00314 * 0.02562 * 12 11 10 26 26 H 1.08993 * 109.47097 * 325.00565 * 13 12 11 27 27 H 1.09005 * 109.47171 * 60.00262 * 14 13 12 28 28 H 1.08994 * 109.47312 * 300.00224 * 14 13 12 29 29 H 1.09008 * 109.46741 * 180.02562 * 15 14 13 30 30 H 1.08993 * 109.46887 * 60.00678 * 15 14 13 31 31 H 1.08997 * 109.46767 * 179.97438 * 16 15 14 32 32 H 1.08996 * 109.47017 * 300.00180 * 16 15 14 33 33 H 1.08996 * 109.47608 * 60.00169 * 17 16 15 34 34 H 1.09004 * 109.47099 * 179.97438 * 17 16 15 35 35 H 1.08998 * 109.47168 * 180.02562 * 18 17 16 36 36 H 1.08996 * 109.47521 * 300.00974 * 18 17 16 37 37 H 1.07998 * 119.72763 * 179.72228 * 19 11 10 38 38 H 1.08005 * 119.88668 * 180.25921 * 20 19 11 39 39 H 0.96999 * 120.00052 * 180.02562 * 22 21 20 40 40 H 0.97004 * 120.00274 * 0.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.3855 2.1071 -1.3948 5 1 1.4968 2.6201 0.8023 6 1 3.5891 1.4122 0.5925 7 6 2.0085 -1.2115 0.0005 8 1 3.0596 -1.2279 0.2481 9 6 1.3411 -2.4111 -0.3223 10 6 0.1934 -2.3874 -1.1351 11 6 -0.4520 -3.5675 -1.4441 12 7 -1.5936 -3.5455 -2.2518 13 6 -2.2817 -4.7961 -2.5815 14 6 -3.2607 -5.1505 -1.4603 15 6 -3.9798 -6.4562 -1.8050 16 6 -4.7477 -6.2846 -3.1172 17 6 -3.7686 -5.9303 -4.2383 18 6 -3.0496 -4.6245 -3.8937 19 6 0.0257 -4.7825 -0.9496 20 6 1.1541 -4.8216 -0.1550 21 6 1.8205 -3.6489 0.1697 22 7 2.9519 -3.6891 0.9738 23 1 -0.4850 0.8400 -0.0004 24 1 -0.1813 -1.4490 -1.5164 25 1 -1.9297 -2.7023 -2.5935 26 1 -1.5493 -5.5959 -2.6905 27 1 -3.9932 -4.3506 -1.3512 28 1 -2.7138 -5.2723 -0.5254 29 1 -4.6776 -6.7084 -1.0064 30 1 -3.2477 -7.2562 -1.9143 31 1 -5.2595 -7.2150 -3.3629 32 1 -5.4798 -5.4846 -3.0078 33 1 -3.0365 -6.7303 -4.3477 34 1 -4.3155 -5.8085 -5.1733 35 1 -2.3524 -4.3719 -4.6926 36 1 -3.7817 -3.8245 -3.7843 37 1 -0.4894 -5.6997 -1.1938 38 1 1.5168 -5.7679 0.2184 39 1 3.4158 -2.8677 1.1996 40 1 3.2784 -4.5386 1.3096 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127179389.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:28 Heat of formation + Delta-G solvation = -1.281190 kcal Electronic energy + Delta-G solvation = -19427.232701 eV Core-core repulsion = 16625.959657 eV Total energy + Delta-G solvation = -2801.273044 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.79371 -37.45424 -34.64702 -33.42338 -31.77572 -30.58647 -29.39154 -28.81580 -25.75962 -24.74293 -22.42174 -21.96158 -20.98202 -19.59050 -19.47255 -17.03455 -16.19387 -15.48160 -15.25265 -14.95119 -14.57383 -14.30866 -14.08391 -13.78237 -12.94954 -12.68758 -12.48000 -12.14540 -12.03122 -11.86724 -11.71798 -11.39922 -11.15218 -11.04214 -10.96966 -10.91049 -10.52272 -10.37581 -10.25974 -10.03485 -9.73829 -9.56289 -9.26197 -9.03610 -7.70231 -7.18369 -6.57671 -5.48539 -4.03480 2.93205 3.15221 3.17911 3.34255 3.52525 4.05494 4.40788 4.83955 4.86097 4.93331 5.13041 5.37098 5.45271 5.45799 5.64013 5.67363 5.71729 5.77021 5.92365 5.95103 6.10973 6.20337 6.24201 6.28076 6.42298 6.43022 6.59177 6.64741 6.77059 7.16478 7.20941 7.36486 7.53569 7.75953 7.93129 8.05463 8.17361 8.50126 8.81016 8.95331 8.99346 9.04501 9.29709 9.38329 10.40690 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025541 B = 0.005165 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.007042 B = 5420.027931 C = 6172.280295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.076 3.924 3 Si 0.902 3.098 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.464 4.464 8 H 0.070 0.930 9 C 0.094 3.906 10 C -0.202 4.202 11 C 0.179 3.821 12 N -0.759 5.759 13 C 0.165 3.835 14 C -0.134 4.134 15 C -0.117 4.117 16 C -0.119 4.119 17 C -0.114 4.114 18 C -0.126 4.126 19 C -0.255 4.255 20 C -0.153 4.153 21 C 0.083 3.917 22 N -0.889 5.889 23 H 0.274 0.726 24 H 0.119 0.881 25 H 0.386 0.614 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.388 0.612 40 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.008 -7.342 -4.880 10.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.495 4.495 8 H 0.089 0.911 9 C 0.089 3.911 10 C -0.226 4.226 11 C 0.081 3.919 12 N -0.392 5.392 13 C 0.058 3.942 14 C -0.174 4.174 15 C -0.155 4.155 16 C -0.157 4.157 17 C -0.152 4.152 18 C -0.164 4.164 19 C -0.279 4.279 20 C -0.177 4.177 21 C -0.018 4.018 22 N -0.432 5.432 23 H 0.085 0.915 24 H 0.137 0.863 25 H 0.219 0.781 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.216 0.784 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -6.296 -7.331 -4.918 10.842 hybrid contribution 0.438 1.094 0.221 1.199 sum -5.858 -6.236 -4.697 9.760 Atomic orbital electron populations 1.69882 1.07220 1.28225 1.37497 1.25741 0.94665 1.00633 0.92923 0.86413 0.80469 0.81550 0.78822 1.19723 1.20620 1.18933 1.19152 0.96615 0.91065 1.42668 0.91144 1.16972 0.92684 0.90249 0.91187 1.20539 1.01073 0.95183 1.05828 1.17523 0.87322 0.94067 0.93030 1.44422 1.30061 1.06312 1.58380 1.20560 0.92843 0.88641 0.92124 1.22070 0.98638 0.96474 1.00189 1.21517 0.99009 0.98240 0.96773 1.21550 0.97920 1.00893 0.95308 1.21471 0.98306 0.97583 0.97881 1.21795 0.99247 0.97655 0.97719 1.19645 1.02380 0.94546 1.11334 1.19708 0.98701 0.94553 1.04776 1.17861 0.91699 0.93930 0.98272 1.41806 1.32129 1.09086 1.60184 0.91537 0.86347 0.78128 0.91231 0.92394 0.91321 0.92414 0.92159 0.92477 0.92188 0.91965 0.92233 0.91753 0.92017 0.89600 0.89890 0.78380 0.80158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.20 10.88 55.55 0.60 -20.59 16 2 C 0.08 1.94 5.18 -17.33 -0.09 1.85 16 3 Si 0.90 19.16 29.59 -169.99 -5.03 14.14 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.46 -12.33 8.50 -37.91 -0.32 -12.65 16 8 H 0.07 1.79 6.67 -52.49 -0.35 1.44 16 9 C 0.09 2.53 5.58 -106.66 -0.60 1.94 16 10 C -0.20 -5.30 8.50 -38.75 -0.33 -5.63 16 11 C 0.18 4.21 6.63 -83.77 -0.56 3.65 16 12 N -0.76 -14.75 5.25 -52.17 -0.27 -15.02 16 13 C 0.17 2.63 2.14 -67.93 -0.15 2.48 16 14 C -0.13 -2.03 5.42 -26.73 -0.14 -2.18 16 15 C -0.12 -1.42 5.92 -26.73 -0.16 -1.58 16 16 C -0.12 -1.26 5.92 -26.73 -0.16 -1.42 16 17 C -0.11 -1.24 5.92 -26.73 -0.16 -1.40 16 18 C -0.13 -1.63 5.39 -26.73 -0.14 -1.78 16 19 C -0.26 -5.86 8.83 -39.14 -0.35 -6.20 16 20 C -0.15 -3.56 9.86 -39.46 -0.39 -3.95 16 21 C 0.08 2.05 6.79 -83.23 -0.56 1.48 16 22 N -0.89 -18.53 8.98 32.74 0.29 -18.23 16 23 H 0.27 6.67 8.30 -40.82 -0.34 6.34 16 24 H 0.12 3.24 6.14 -52.49 -0.32 2.92 16 25 H 0.39 7.25 8.61 -40.82 -0.35 6.90 16 26 H 0.07 1.19 6.48 -51.93 -0.34 0.85 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 1.20 7.66 -51.93 -0.40 0.80 16 29 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 1.80 6.04 -52.49 -0.32 1.48 16 38 H 0.08 1.73 8.06 -52.48 -0.42 1.31 16 39 H 0.39 7.94 7.04 -40.82 -0.29 7.65 16 40 H 0.37 6.59 8.83 -40.82 -0.36 6.23 16 LS Contribution 313.72 15.07 4.73 4.73 Total: -1.00 -28.07 313.72 -9.86 -37.94 By element: Atomic # 1 Polarization: 28.51 SS G_CDS: -6.09 Total: 22.42 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: -4.10 Total: -25.38 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 0.62 Total: -53.84 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.07 -9.86 -37.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127179389.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.657 kcal (2) G-P(sol) polarization free energy of solvation -28.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds