Wall clock time and date at job start Mon Mar 30 2020 06:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30897 * 1 3 3 Si 1.86798 * 119.99959 * 2 1 4 4 H 1.48497 * 109.47416 * 274.96647 * 3 2 1 5 5 H 1.48501 * 109.47097 * 34.96314 * 3 2 1 6 6 H 1.48503 * 109.47515 * 154.96520 * 3 2 1 7 7 C 1.39891 * 120.00339 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99887 * 195.34922 * 7 2 1 9 9 C 1.41027 * 119.99739 * 15.35134 * 7 2 1 10 10 C 1.40665 * 120.26777 * 25.54572 * 9 7 2 11 11 C 1.38008 * 119.76843 * 180.02562 * 10 9 7 12 12 N 1.39857 * 119.83719 * 179.97438 * 11 10 9 13 13 C 1.46502 * 119.99719 * 180.02562 * 12 11 10 14 14 C 1.53005 * 109.46870 * 85.00063 * 13 12 11 15 15 C 1.53002 * 109.46792 * 179.97438 * 14 13 12 16 16 C 1.53003 * 109.47317 * 299.99940 * 15 14 13 17 17 C 1.52997 * 109.46569 * 60.00373 * 16 15 14 18 18 C 1.52999 * 109.47341 * 299.99249 * 17 16 15 19 19 C 1.39602 * 120.32312 * 0.26212 * 11 10 9 20 20 C 1.38061 * 120.54339 * 359.47897 * 19 11 10 21 21 C 1.38733 * 120.22255 * 0.51764 * 20 19 11 22 22 N 1.38862 * 120.16305 * 179.71976 * 21 20 19 23 23 H 0.96999 * 120.00012 * 0.02562 * 1 2 3 24 24 H 1.08000 * 120.11605 * 0.05244 * 10 9 7 25 25 H 0.96998 * 120.00314 * 0.02562 * 12 11 10 26 26 H 1.08993 * 109.47097 * 325.00565 * 13 12 11 27 27 H 1.09005 * 109.47171 * 60.00262 * 14 13 12 28 28 H 1.08994 * 109.47312 * 300.00224 * 14 13 12 29 29 H 1.09008 * 109.46741 * 180.02562 * 15 14 13 30 30 H 1.08993 * 109.46887 * 60.00678 * 15 14 13 31 31 H 1.08997 * 109.46767 * 179.97438 * 16 15 14 32 32 H 1.08996 * 109.47017 * 300.00180 * 16 15 14 33 33 H 1.08996 * 109.47608 * 60.00169 * 17 16 15 34 34 H 1.09004 * 109.47099 * 179.97438 * 17 16 15 35 35 H 1.08998 * 109.47168 * 180.02562 * 18 17 16 36 36 H 1.08996 * 109.47521 * 300.00974 * 18 17 16 37 37 H 1.07998 * 119.72763 * 179.72228 * 19 11 10 38 38 H 1.08005 * 119.88668 * 180.25921 * 20 19 11 39 39 H 0.96999 * 120.00052 * 180.02562 * 22 21 20 40 40 H 0.97004 * 120.00274 * 0.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.3855 2.1071 -1.3948 5 1 1.4968 2.6201 0.8023 6 1 3.5891 1.4122 0.5925 7 6 2.0085 -1.2115 0.0005 8 1 3.0596 -1.2279 0.2481 9 6 1.3411 -2.4111 -0.3223 10 6 0.1934 -2.3874 -1.1351 11 6 -0.4520 -3.5675 -1.4441 12 7 -1.5936 -3.5455 -2.2518 13 6 -2.2817 -4.7961 -2.5815 14 6 -3.2607 -5.1505 -1.4603 15 6 -3.9798 -6.4562 -1.8050 16 6 -4.7477 -6.2846 -3.1172 17 6 -3.7686 -5.9303 -4.2383 18 6 -3.0496 -4.6245 -3.8937 19 6 0.0257 -4.7825 -0.9496 20 6 1.1541 -4.8216 -0.1550 21 6 1.8205 -3.6489 0.1697 22 7 2.9519 -3.6891 0.9738 23 1 -0.4850 0.8400 -0.0004 24 1 -0.1813 -1.4490 -1.5164 25 1 -1.9297 -2.7023 -2.5935 26 1 -1.5493 -5.5959 -2.6905 27 1 -3.9932 -4.3506 -1.3512 28 1 -2.7138 -5.2723 -0.5254 29 1 -4.6776 -6.7084 -1.0064 30 1 -3.2477 -7.2562 -1.9143 31 1 -5.2595 -7.2150 -3.3629 32 1 -5.4798 -5.4846 -3.0078 33 1 -3.0365 -6.7303 -4.3477 34 1 -4.3155 -5.8085 -5.1733 35 1 -2.3524 -4.3719 -4.6926 36 1 -3.7817 -3.8245 -3.7843 37 1 -0.4894 -5.6997 -1.1938 38 1 1.5168 -5.7679 0.2184 39 1 3.4158 -2.8677 1.1996 40 1 3.2784 -4.5386 1.3096 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127179389.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:28 Heat of formation + Delta-G solvation = -17.294078 kcal Electronic energy + Delta-G solvation = -19427.927072 eV Core-core repulsion = 16625.959657 eV Total energy + Delta-G solvation = -2801.967415 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.19966 -39.04091 -36.19930 -35.31943 -33.33906 -31.64775 -31.26849 -30.24375 -27.49225 -26.56888 -23.61469 -23.28341 -22.58365 -21.31564 -20.64234 -18.89191 -17.86118 -17.26155 -16.69306 -16.60406 -16.24982 -15.54307 -15.14513 -14.96777 -14.50013 -14.26982 -14.03563 -13.80409 -13.44203 -13.30408 -13.13464 -13.04598 -12.87204 -12.72228 -12.26502 -12.03348 -11.97045 -11.79308 -11.64656 -11.43206 -11.12166 -11.04612 -10.94113 -10.91883 -9.36687 -9.13163 -8.48660 -7.27917 -5.99921 1.12795 1.40890 1.51968 1.52778 1.67026 2.27270 2.90345 2.98285 3.77896 3.83184 3.90091 4.01166 4.13200 4.32744 4.40429 4.51729 4.61039 4.63269 4.67661 4.77590 4.86683 4.97438 5.15958 5.20629 5.24105 5.26834 5.27254 5.37498 5.38228 5.46440 5.49283 5.58502 5.70122 5.91987 6.08280 6.19415 6.31189 6.58454 6.98361 7.08352 7.15850 7.30129 7.49152 7.67707 8.51706 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025541 B = 0.005165 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.007042 B = 5420.027931 C = 6172.280295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.032 3.968 3 Si 0.975 3.025 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.492 4.492 8 H 0.074 0.926 9 C 0.060 3.940 10 C -0.228 4.228 11 C 0.177 3.823 12 N -0.757 5.757 13 C 0.162 3.838 14 C -0.129 4.129 15 C -0.113 4.113 16 C -0.116 4.116 17 C -0.111 4.111 18 C -0.120 4.120 19 C -0.257 4.257 20 C -0.158 4.158 21 C 0.067 3.933 22 N -0.879 5.879 23 H 0.278 0.722 24 H 0.098 0.902 25 H 0.386 0.614 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.039 0.961 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.390 0.610 40 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.548 -8.375 -5.523 11.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.180 4.180 3 Si 0.798 3.202 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.181 1.181 7 C -0.523 4.523 8 H 0.092 0.908 9 C 0.055 3.945 10 C -0.253 4.253 11 C 0.076 3.924 12 N -0.389 5.389 13 C 0.057 3.943 14 C -0.169 4.169 15 C -0.151 4.151 16 C -0.153 4.153 17 C -0.148 4.148 18 C -0.158 4.158 19 C -0.281 4.281 20 C -0.183 4.183 21 C -0.035 4.035 22 N -0.423 5.423 23 H 0.089 0.911 24 H 0.116 0.884 25 H 0.219 0.781 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.218 0.782 40 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -6.843 -8.403 -5.562 12.181 hybrid contribution 0.555 1.319 0.412 1.489 sum -6.289 -7.085 -5.150 10.783 Atomic orbital electron populations 1.69971 1.08718 1.29300 1.38266 1.26573 0.95415 1.03901 0.92097 0.85296 0.79223 0.76905 0.78815 1.19438 1.19978 1.18133 1.19415 0.96941 0.91982 1.43993 0.90813 1.17367 0.93515 0.91553 0.92087 1.20515 1.02162 0.95368 1.07245 1.17623 0.88133 0.93526 0.93079 1.44562 1.29125 1.07841 1.57346 1.20778 0.92818 0.86644 0.94100 1.21981 0.98177 0.98248 0.98449 1.21498 0.99168 0.96198 0.98228 1.21544 0.97662 1.02123 0.93994 1.21476 0.98397 0.96061 0.98911 1.21751 0.99047 0.99355 0.95652 1.19925 1.02367 0.95012 1.10797 1.20053 0.98521 0.95290 1.04390 1.18032 0.92852 0.93689 0.98890 1.41671 1.31077 1.10108 1.59464 0.91132 0.88380 0.78077 0.92118 0.92949 0.94210 0.91411 0.91849 0.90255 0.92017 0.91670 0.90195 0.92009 0.91736 0.87647 0.87243 0.78249 0.78233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.56 10.88 21.82 0.24 -45.32 16 2 C 0.03 1.69 5.18 85.23 0.44 2.13 16 3 Si 0.98 39.81 29.59 68.60 2.03 41.84 16 4 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 7 C -0.49 -26.82 8.50 23.35 0.20 -26.62 16 8 H 0.07 3.81 6.67 -2.91 -0.02 3.79 16 9 C 0.06 3.32 5.58 -21.18 -0.12 3.20 16 10 C -0.23 -12.46 8.50 22.81 0.19 -12.27 16 11 C 0.18 8.49 6.63 38.14 0.25 8.74 16 12 N -0.76 -29.86 5.25 -318.96 -1.68 -31.53 16 13 C 0.16 5.06 2.14 44.99 0.10 5.15 16 14 C -0.13 -3.83 5.42 30.60 0.17 -3.66 16 15 C -0.11 -2.48 5.92 30.60 0.18 -2.30 16 16 C -0.12 -2.08 5.92 30.59 0.18 -1.90 16 17 C -0.11 -2.07 5.92 30.59 0.18 -1.89 16 18 C -0.12 -2.92 5.39 30.59 0.16 -2.76 16 19 C -0.26 -11.76 8.83 22.56 0.20 -11.56 16 20 C -0.16 -7.27 9.86 22.35 0.22 -7.05 16 21 C 0.07 3.33 6.79 38.97 0.26 3.60 16 22 N -0.88 -36.25 8.98 -50.31 -0.45 -36.71 16 23 H 0.28 13.94 8.30 -92.71 -0.77 13.17 16 24 H 0.10 5.66 6.14 -2.91 -0.02 5.64 16 25 H 0.39 14.93 8.61 -92.71 -0.80 14.13 16 26 H 0.06 2.01 6.48 -2.39 -0.02 2.00 16 27 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 28 H 0.04 1.39 7.66 -2.39 -0.02 1.37 16 29 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.11 4.32 6.04 -2.91 -0.02 4.31 16 38 H 0.11 4.35 8.06 -2.91 -0.02 4.33 16 39 H 0.39 15.90 7.04 -92.71 -0.65 15.25 16 40 H 0.39 13.28 8.83 -92.71 -0.82 12.46 16 Total: -1.00 -61.70 313.72 1.56 -60.14 By element: Atomic # 1 Polarization: 59.96 SS G_CDS: -1.21 Total: 58.76 kcal Atomic # 6 Polarization: -49.81 SS G_CDS: 2.62 Total: -47.18 kcal Atomic # 7 Polarization: -111.67 SS G_CDS: -1.89 Total: -113.56 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.84 kcal Total: -61.70 1.56 -60.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127179389.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.843 kcal (2) G-P(sol) polarization free energy of solvation -61.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds