Wall clock time and date at job start Mon Mar 30 2020 06:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86797 * 120.00062 * 2 1 4 4 H 1.48497 * 109.47049 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47403 * 299.99881 * 3 2 1 6 6 H 1.48503 * 109.47061 * 60.00116 * 3 2 1 7 7 C 1.39887 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00232 * 163.88791 * 7 2 1 9 9 C 1.41026 * 119.99813 * 343.88904 * 7 2 1 10 10 C 1.40663 * 120.27137 * 333.53198 * 9 7 2 11 11 C 1.38010 * 119.77183 * 179.73651 * 10 9 7 12 12 N 1.39852 * 119.83808 * 180.23174 * 11 10 9 13 13 C 1.46500 * 119.99933 * 180.30765 * 12 11 10 14 14 C 1.53000 * 109.47615 * 180.02562 * 13 12 11 15 15 C 1.54268 * 110.03064 * 292.91237 * 14 13 12 16 16 C 1.54960 * 104.15965 * 217.13458 * 15 14 13 17 17 C 1.54888 * 102.77706 * 37.88519 * 16 15 14 18 18 C 1.53870 * 110.03288 * 175.69063 * 14 13 12 19 19 C 1.39591 * 120.31780 * 0.54803 * 11 10 9 20 20 C 1.38064 * 120.55511 * 359.71041 * 19 11 10 21 21 C 1.38738 * 120.21307 * 0.02562 * 20 19 11 22 22 N 1.38872 * 120.15556 * 179.97438 * 21 20 19 23 23 H 0.97006 * 120.00048 * 0.02562 * 1 2 3 24 24 H 1.08007 * 120.11228 * 359.97438 * 10 9 7 25 25 H 0.97002 * 120.00295 * 0.31554 * 12 11 10 26 26 H 1.08997 * 109.47331 * 300.00691 * 13 12 11 27 27 H 1.09007 * 109.47209 * 60.00513 * 13 12 11 28 28 H 1.09001 * 110.01379 * 54.29603 * 14 13 12 29 29 H 1.09005 * 110.48242 * 335.77898 * 15 14 13 30 30 H 1.08998 * 110.48899 * 98.42004 * 15 14 13 31 31 H 1.09005 * 110.71734 * 279.57299 * 16 15 14 32 32 H 1.08999 * 110.92602 * 156.29483 * 16 15 14 33 33 H 1.09009 * 110.48683 * 203.40568 * 17 16 15 34 34 H 1.09004 * 110.60040 * 80.81961 * 17 16 15 35 35 H 1.09002 * 110.03232 * 238.56397 * 18 14 13 36 36 H 1.08998 * 110.03468 * 359.95324 * 18 14 13 37 37 H 1.08000 * 119.72588 * 179.73353 * 19 11 10 38 38 H 1.07995 * 119.89257 * 180.02562 * 20 19 11 39 39 H 0.96998 * 119.99379 * 180.02562 * 22 21 20 40 40 H 0.96995 * 120.00248 * 0.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.7030 1.3463 0.0006 5 1 1.8844 2.3964 -1.2125 6 1 1.8843 2.3964 1.2125 7 6 2.0084 -1.2115 0.0005 8 1 3.0566 -1.2300 -0.2590 9 6 1.3448 -2.4086 0.3400 10 6 0.2179 -2.3806 1.1815 11 6 -0.4269 -3.5578 1.5026 12 7 -1.5503 -3.5311 2.3352 13 6 -2.2335 -4.7792 2.6838 14 6 -3.4213 -4.4724 3.5981 15 6 -2.9189 -3.9495 4.9597 16 6 -3.9028 -4.5629 5.9878 17 6 -4.1624 -5.9771 5.4119 18 6 -4.2120 -5.7608 3.8853 19 6 0.0406 -4.7756 1.0057 20 6 1.1486 -4.8191 0.1832 21 6 1.8108 -3.6489 -0.1585 22 7 2.9255 -3.6941 -0.9856 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1437 -1.4407 1.5718 25 1 -1.8772 -2.6861 2.6817 26 1 -2.5905 -5.2641 1.7752 27 1 -1.5388 -5.4418 3.2002 28 1 -4.0706 -3.7322 3.1304 29 1 -1.9031 -4.2962 5.1502 30 1 -2.9634 -2.8609 4.9903 31 1 -4.8271 -3.9865 6.0282 32 1 -3.4451 -4.6258 6.9750 33 1 -5.1140 -6.3673 5.7731 34 1 -3.3492 -6.6536 5.6752 35 1 -5.2453 -5.6456 3.5579 36 1 -3.7500 -6.6046 3.3727 37 1 -0.4688 -5.6915 1.2667 38 1 1.5009 -5.7672 -0.1955 39 1 3.3869 -2.8745 -1.2227 40 1 3.2426 -4.5451 -1.3261 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127220439.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:34 Heat of formation + Delta-G solvation = 0.096580 kcal Electronic energy + Delta-G solvation = -19066.613789 eV Core-core repulsion = 16265.400489 eV Total energy + Delta-G solvation = -2801.213299 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.62308 -37.63152 -34.96521 -33.41601 -31.96503 -29.46954 -29.29967 -28.62934 -26.25968 -24.70492 -23.51755 -21.09828 -20.68462 -19.59691 -19.44230 -17.04557 -16.18985 -15.77399 -15.41369 -15.12784 -14.75012 -14.51034 -14.02697 -13.69627 -13.27691 -12.82178 -12.36187 -12.30154 -11.86637 -11.71512 -11.34003 -11.21936 -11.13939 -11.02831 -10.97521 -10.91034 -10.71329 -10.59207 -10.38423 -10.29380 -9.80793 -9.63633 -9.27390 -9.02901 -7.70630 -7.18241 -6.58608 -5.48550 -4.03459 2.92349 3.15467 3.19916 3.33505 3.52332 4.05827 4.39700 4.64538 4.72501 4.82743 4.86979 5.34082 5.44738 5.46069 5.52848 5.64461 5.65813 5.72382 5.85760 5.89865 5.94391 6.06579 6.14266 6.19140 6.32496 6.37668 6.41353 6.54714 6.67725 7.16160 7.19624 7.35408 7.53274 7.74818 7.92340 8.04158 8.16683 8.49934 8.80224 8.94901 8.98809 9.04018 9.29508 9.38083 10.40750 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022556 B = 0.004840 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.082795 B = 5784.256282 C = 6762.029481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.077 3.923 3 Si 0.900 3.100 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.465 4.465 8 H 0.071 0.929 9 C 0.095 3.905 10 C -0.201 4.201 11 C 0.178 3.822 12 N -0.762 5.762 13 C 0.147 3.853 14 C -0.103 4.103 15 C -0.118 4.118 16 C -0.126 4.126 17 C -0.124 4.124 18 C -0.117 4.117 19 C -0.255 4.255 20 C -0.153 4.153 21 C 0.084 3.916 22 N -0.889 5.889 23 H 0.274 0.726 24 H 0.116 0.884 25 H 0.387 0.613 26 H 0.043 0.957 27 H 0.045 0.955 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.388 0.612 40 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.043 -6.315 7.322 11.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.139 4.139 3 Si 0.726 3.274 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.201 1.201 7 C -0.496 4.496 8 H 0.089 0.911 9 C 0.090 3.910 10 C -0.225 4.225 11 C 0.079 3.921 12 N -0.397 5.397 13 C 0.022 3.978 14 C -0.122 4.122 15 C -0.155 4.155 16 C -0.163 4.163 17 C -0.162 4.162 18 C -0.155 4.155 19 C -0.279 4.279 20 C -0.177 4.177 21 C -0.017 4.017 22 N -0.432 5.432 23 H 0.084 0.916 24 H 0.134 0.866 25 H 0.220 0.780 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.216 0.784 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -6.348 -6.332 7.359 11.599 hybrid contribution 0.433 1.064 -0.226 1.171 sum -5.915 -5.268 7.133 10.659 Atomic orbital electron populations 1.69897 1.07248 1.28205 1.37442 1.25740 0.94643 1.00636 0.92875 0.86400 0.80900 0.81856 0.78262 1.18734 1.20361 1.20051 1.19156 0.96891 0.91148 1.42414 0.91097 1.16969 0.92676 0.90253 0.91070 1.20478 1.01504 0.95109 1.05454 1.17520 0.87763 0.94098 0.92705 1.44329 1.32128 1.06484 1.56774 1.21114 0.92097 0.88234 0.96363 1.21991 0.96772 0.97430 0.96036 1.22436 0.99244 1.00155 0.93713 1.22514 0.99319 0.96083 0.98406 1.22352 1.01149 0.97208 0.95446 1.22125 0.99875 0.97501 0.96024 1.19607 1.02983 0.94441 1.10887 1.19704 0.99052 0.94606 1.04347 1.17863 0.92135 0.93920 0.97763 1.41805 1.33720 1.09093 1.58572 0.91562 0.86603 0.78035 0.93874 0.93675 0.90850 0.91135 0.91783 0.91835 0.91897 0.92091 0.91707 0.91934 0.91523 0.89794 0.89837 0.78362 0.80145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.24 10.98 55.55 0.61 -20.63 16 2 C 0.08 1.96 5.16 -17.33 -0.09 1.87 16 3 Si 0.90 19.15 29.59 -169.99 -5.03 14.12 16 4 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 7 C -0.46 -12.39 8.48 -37.91 -0.32 -12.71 16 8 H 0.07 1.80 6.70 -52.49 -0.35 1.45 16 9 C 0.10 2.58 5.57 -106.66 -0.59 1.98 16 10 C -0.20 -5.31 8.49 -38.75 -0.33 -5.64 16 11 C 0.18 4.24 6.64 -83.78 -0.56 3.68 16 12 N -0.76 -14.95 5.57 -58.64 -0.33 -15.28 16 13 C 0.15 2.37 3.96 -4.04 -0.02 2.36 16 14 C -0.10 -1.33 2.97 -89.50 -0.27 -1.59 16 15 C -0.12 -1.44 6.05 -25.03 -0.15 -1.59 16 16 C -0.13 -1.27 6.91 -24.70 -0.17 -1.44 16 17 C -0.12 -1.21 6.83 -25.07 -0.17 -1.38 16 18 C -0.12 -1.27 6.46 -25.61 -0.17 -1.43 16 19 C -0.26 -5.96 9.31 -39.14 -0.36 -6.32 16 20 C -0.15 -3.59 9.86 -39.46 -0.39 -3.98 16 21 C 0.08 2.08 6.79 -83.22 -0.56 1.51 16 22 N -0.89 -18.59 8.98 32.75 0.29 -18.29 16 23 H 0.27 6.66 8.30 -40.82 -0.34 6.32 16 24 H 0.12 3.18 6.24 -52.48 -0.33 2.85 16 25 H 0.39 7.29 8.34 -40.82 -0.34 6.95 16 26 H 0.04 0.72 7.94 -51.93 -0.41 0.31 16 27 H 0.05 0.74 7.82 -51.92 -0.41 0.34 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.07 0.94 7.77 -51.93 -0.40 0.54 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.72 7.67 -51.93 -0.40 0.32 16 37 H 0.08 1.79 6.69 -52.49 -0.35 1.44 16 38 H 0.08 1.75 8.06 -52.49 -0.42 1.33 16 39 H 0.39 7.96 7.05 -40.82 -0.29 7.67 16 40 H 0.37 6.62 8.83 -40.82 -0.36 6.26 16 LS Contribution 318.33 15.07 4.80 4.80 Total: -1.00 -28.43 318.33 -9.96 -38.39 By element: Atomic # 1 Polarization: 27.72 SS G_CDS: -6.16 Total: 21.56 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: -4.15 Total: -24.67 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: 0.58 Total: -54.20 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.43 -9.96 -38.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127220439.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.490 kcal (2) G-P(sol) polarization free energy of solvation -28.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds