Wall clock time and date at job start Mon Mar 30 2020 06:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86797 * 120.00062 * 2 1 4 4 H 1.48497 * 109.47049 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47403 * 299.99881 * 3 2 1 6 6 H 1.48503 * 109.47061 * 60.00116 * 3 2 1 7 7 C 1.39887 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00232 * 163.88791 * 7 2 1 9 9 C 1.41026 * 119.99813 * 343.88904 * 7 2 1 10 10 C 1.40663 * 120.27137 * 333.53198 * 9 7 2 11 11 C 1.38010 * 119.77183 * 179.73651 * 10 9 7 12 12 N 1.39852 * 119.83808 * 180.23174 * 11 10 9 13 13 C 1.46500 * 119.99933 * 180.30765 * 12 11 10 14 14 C 1.53000 * 109.47615 * 180.02562 * 13 12 11 15 15 C 1.54268 * 110.03064 * 292.91237 * 14 13 12 16 16 C 1.54960 * 104.15965 * 217.13458 * 15 14 13 17 17 C 1.54888 * 102.77706 * 37.88519 * 16 15 14 18 18 C 1.53870 * 110.03288 * 175.69063 * 14 13 12 19 19 C 1.39591 * 120.31780 * 0.54803 * 11 10 9 20 20 C 1.38064 * 120.55511 * 359.71041 * 19 11 10 21 21 C 1.38738 * 120.21307 * 0.02562 * 20 19 11 22 22 N 1.38872 * 120.15556 * 179.97438 * 21 20 19 23 23 H 0.97006 * 120.00048 * 0.02562 * 1 2 3 24 24 H 1.08007 * 120.11228 * 359.97438 * 10 9 7 25 25 H 0.97002 * 120.00295 * 0.31554 * 12 11 10 26 26 H 1.08997 * 109.47331 * 300.00691 * 13 12 11 27 27 H 1.09007 * 109.47209 * 60.00513 * 13 12 11 28 28 H 1.09001 * 110.01379 * 54.29603 * 14 13 12 29 29 H 1.09005 * 110.48242 * 335.77898 * 15 14 13 30 30 H 1.08998 * 110.48899 * 98.42004 * 15 14 13 31 31 H 1.09005 * 110.71734 * 279.57299 * 16 15 14 32 32 H 1.08999 * 110.92602 * 156.29483 * 16 15 14 33 33 H 1.09009 * 110.48683 * 203.40568 * 17 16 15 34 34 H 1.09004 * 110.60040 * 80.81961 * 17 16 15 35 35 H 1.09002 * 110.03232 * 238.56397 * 18 14 13 36 36 H 1.08998 * 110.03468 * 359.95324 * 18 14 13 37 37 H 1.08000 * 119.72588 * 179.73353 * 19 11 10 38 38 H 1.07995 * 119.89257 * 180.02562 * 20 19 11 39 39 H 0.96998 * 119.99379 * 180.02562 * 22 21 20 40 40 H 0.96995 * 120.00248 * 0.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.7030 1.3463 0.0006 5 1 1.8844 2.3964 -1.2125 6 1 1.8843 2.3964 1.2125 7 6 2.0084 -1.2115 0.0005 8 1 3.0566 -1.2300 -0.2590 9 6 1.3448 -2.4086 0.3400 10 6 0.2179 -2.3806 1.1815 11 6 -0.4269 -3.5578 1.5026 12 7 -1.5503 -3.5311 2.3352 13 6 -2.2335 -4.7792 2.6838 14 6 -3.4213 -4.4724 3.5981 15 6 -2.9189 -3.9495 4.9597 16 6 -3.9028 -4.5629 5.9878 17 6 -4.1624 -5.9771 5.4119 18 6 -4.2120 -5.7608 3.8853 19 6 0.0406 -4.7756 1.0057 20 6 1.1486 -4.8191 0.1832 21 6 1.8108 -3.6489 -0.1585 22 7 2.9255 -3.6941 -0.9856 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1437 -1.4407 1.5718 25 1 -1.8772 -2.6861 2.6817 26 1 -2.5905 -5.2641 1.7752 27 1 -1.5388 -5.4418 3.2002 28 1 -4.0706 -3.7322 3.1304 29 1 -1.9031 -4.2962 5.1502 30 1 -2.9634 -2.8609 4.9903 31 1 -4.8271 -3.9865 6.0282 32 1 -3.4451 -4.6258 6.9750 33 1 -5.1140 -6.3673 5.7731 34 1 -3.3492 -6.6536 5.6752 35 1 -5.2453 -5.6456 3.5579 36 1 -3.7500 -6.6046 3.3727 37 1 -0.4688 -5.6915 1.2667 38 1 1.5009 -5.7672 -0.1955 39 1 3.3869 -2.8745 -1.2227 40 1 3.2426 -4.5451 -1.3261 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127220439.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:33 Heat of formation + Delta-G solvation = -16.002997 kcal Electronic energy + Delta-G solvation = -19067.311919 eV Core-core repulsion = 16265.400489 eV Total energy + Delta-G solvation = -2801.911430 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.97032 -39.14176 -36.55191 -35.31955 -33.54094 -31.30863 -30.69361 -29.54256 -27.91423 -26.55682 -24.90155 -22.92924 -21.64451 -21.29881 -20.52166 -18.90707 -17.84534 -17.25943 -16.89433 -16.60757 -16.39345 -15.91971 -15.32905 -15.00214 -14.54930 -14.19619 -14.16551 -13.82236 -13.60419 -13.35048 -13.10056 -12.84794 -12.70971 -12.19257 -12.03015 -11.96650 -11.92184 -11.87130 -11.62650 -11.47920 -11.37086 -11.18020 -11.13386 -10.93713 -9.39628 -9.13578 -8.49999 -7.29026 -6.00472 1.11694 1.41238 1.50503 1.54915 1.65562 2.27494 2.90868 2.99137 3.71827 3.76344 3.77594 3.84093 3.97200 4.39911 4.51069 4.55608 4.58908 4.62395 4.73294 4.83606 4.86643 4.91837 4.95923 5.10610 5.12671 5.24067 5.26326 5.34320 5.37540 5.43502 5.50202 5.51754 5.67987 5.89639 6.06711 6.16990 6.29217 6.57472 6.97857 7.06644 7.13996 7.27934 7.48048 7.67451 8.51571 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022556 B = 0.004840 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.082795 B = 5784.256282 C = 6762.029481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.033 3.967 3 Si 0.975 3.025 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.493 4.493 8 H 0.074 0.926 9 C 0.061 3.939 10 C -0.226 4.226 11 C 0.173 3.827 12 N -0.758 5.758 13 C 0.148 3.852 14 C -0.098 4.098 15 C -0.120 4.120 16 C -0.121 4.121 17 C -0.121 4.121 18 C -0.115 4.115 19 C -0.260 4.260 20 C -0.158 4.158 21 C 0.069 3.931 22 N -0.879 5.879 23 H 0.279 0.721 24 H 0.096 0.904 25 H 0.388 0.612 26 H 0.039 0.961 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.390 0.610 40 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.448 -7.057 7.880 12.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.179 4.179 3 Si 0.797 3.203 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.524 4.524 8 H 0.092 0.908 9 C 0.056 3.944 10 C -0.251 4.251 11 C 0.072 3.928 12 N -0.392 5.392 13 C 0.024 3.976 14 C -0.117 4.117 15 C -0.158 4.158 16 C -0.158 4.158 17 C -0.158 4.158 18 C -0.153 4.153 19 C -0.284 4.284 20 C -0.182 4.182 21 C -0.033 4.033 22 N -0.423 5.423 23 H 0.089 0.911 24 H 0.114 0.886 25 H 0.221 0.779 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.123 0.877 38 H 0.129 0.871 39 H 0.218 0.782 40 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -6.758 -7.109 7.919 12.606 hybrid contribution 0.520 1.201 -0.393 1.366 sum -6.238 -5.908 7.526 11.422 Atomic orbital electron populations 1.69978 1.08752 1.29349 1.38158 1.26573 0.95393 1.03910 0.92033 0.85274 0.79539 0.77146 0.78354 1.18157 1.19649 1.19669 1.19418 0.97216 0.92066 1.43713 0.90770 1.17366 0.93498 0.91573 0.91934 1.20448 1.02621 0.95246 1.06790 1.17647 0.88584 0.93635 0.92903 1.44431 1.31115 1.07966 1.55695 1.21267 0.92946 0.86597 0.96825 1.21952 0.95506 0.98705 0.95498 1.22419 0.99128 0.99956 0.94247 1.22502 0.99002 0.96254 0.98071 1.22355 1.02183 0.96903 0.94390 1.22129 1.00063 0.96072 0.97046 1.19913 1.03060 0.94936 1.10481 1.20052 0.98805 0.95388 1.03949 1.18035 0.93242 0.93669 0.98369 1.41675 1.32665 1.10142 1.57814 0.91086 0.88633 0.77908 0.94265 0.93812 0.91180 0.92612 0.92331 0.90959 0.91045 0.90260 0.91690 0.90731 0.91476 0.87708 0.87111 0.78210 0.78199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.47 10.98 21.82 0.24 -45.23 16 2 C 0.03 1.74 5.16 85.23 0.44 2.18 16 3 Si 0.97 39.69 29.59 68.60 2.03 41.72 16 4 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 5 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 6 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 7 C -0.49 -26.83 8.48 23.35 0.20 -26.63 16 8 H 0.07 3.83 6.70 -2.91 -0.02 3.81 16 9 C 0.06 3.40 5.57 -21.18 -0.12 3.28 16 10 C -0.23 -12.37 8.49 22.81 0.19 -12.18 16 11 C 0.17 8.36 6.64 38.13 0.25 8.61 16 12 N -0.76 -30.05 5.57 -339.43 -1.89 -31.94 16 13 C 0.15 4.67 3.96 86.38 0.34 5.02 16 14 C -0.10 -2.40 2.97 -10.07 -0.03 -2.43 16 15 C -0.12 -2.82 6.05 31.69 0.19 -2.63 16 16 C -0.12 -2.19 6.91 31.91 0.22 -1.97 16 17 C -0.12 -2.03 6.83 31.67 0.22 -1.82 16 18 C -0.12 -2.24 6.46 31.32 0.20 -2.03 16 19 C -0.26 -11.96 9.31 22.56 0.21 -11.76 16 20 C -0.16 -7.25 9.86 22.35 0.22 -7.03 16 21 C 0.07 3.41 6.79 38.97 0.26 3.67 16 22 N -0.88 -36.16 8.98 -50.30 -0.45 -36.62 16 23 H 0.28 13.90 8.30 -92.70 -0.77 13.13 16 24 H 0.10 5.51 6.24 -2.91 -0.02 5.49 16 25 H 0.39 15.01 8.34 -92.71 -0.77 14.24 16 26 H 0.04 1.28 7.94 -2.39 -0.02 1.26 16 27 H 0.04 1.41 7.82 -2.38 -0.02 1.39 16 28 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.06 1.47 7.77 -2.38 -0.02 1.45 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.07 1.31 7.67 -2.39 -0.02 1.29 16 37 H 0.10 4.30 6.69 -2.91 -0.02 4.28 16 38 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 39 H 0.39 15.86 7.05 -92.71 -0.65 15.21 16 40 H 0.39 13.24 8.83 -92.71 -0.82 12.42 16 Total: -1.00 -61.59 318.33 1.55 -60.05 By element: Atomic # 1 Polarization: 58.92 SS G_CDS: -1.19 Total: 57.73 kcal Atomic # 6 Polarization: -48.53 SS G_CDS: 2.80 Total: -45.72 kcal Atomic # 7 Polarization: -111.68 SS G_CDS: -2.10 Total: -113.78 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.72 kcal Total: -61.59 1.55 -60.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127220439.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.044 kcal (2) G-P(sol) polarization free energy of solvation -61.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds