Wall clock time and date at job start Mon Mar 30 2020 07:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47563 * 2 1 4 4 H 1.09007 * 109.87888 * 52.65473 * 3 2 1 5 5 C 1.54317 * 109.88923 * 291.62015 * 3 2 1 6 6 C 1.55397 * 102.89802 * 218.40391 * 5 3 2 7 7 C 1.54913 * 101.74172 * 35.48218 * 6 5 3 8 8 N 1.47448 * 109.88946 * 173.68088 * 3 2 1 9 9 C 1.39854 * 110.99983 * 356.14898 * 8 3 2 10 10 C 1.39599 * 119.83746 * 72.55327 * 9 8 3 11 11 C 1.38050 * 120.55179 * 179.97438 * 10 9 8 12 12 C 1.38740 * 120.22059 * 0.02562 * 11 10 9 13 13 N 1.38865 * 120.16597 * 179.97438 * 12 11 10 14 14 C 1.41564 * 119.67180 * 0.02562 * 12 11 10 15 15 C 1.41025 * 120.26644 * 179.97438 * 14 12 11 16 16 H 1.08000 * 120.00154 * 324.41425 * 15 14 12 17 17 C 1.39888 * 119.99821 * 144.42166 * 15 14 12 18 18 N 1.30901 * 119.99838 * 168.91002 * 17 15 14 19 19 Si 1.86804 * 119.99924 * 348.90589 * 17 15 14 20 20 H 1.48495 * 109.47130 * 86.88034 * 19 17 15 21 21 H 1.48499 * 109.46890 * 206.88046 * 19 17 15 22 22 H 1.48502 * 109.47066 * 326.87961 * 19 17 15 23 23 C 1.38006 * 119.84018 * 252.27467 * 9 8 3 24 24 H 1.08997 * 109.47528 * 175.31965 * 1 2 3 25 25 H 1.09004 * 109.46915 * 55.31975 * 1 2 3 26 26 H 1.09000 * 109.46999 * 295.32559 * 1 2 3 27 27 H 1.09002 * 109.46995 * 120.00286 * 2 1 3 28 28 H 1.09000 * 109.47137 * 239.99877 * 2 1 3 29 29 H 1.08994 * 110.70938 * 336.69003 * 5 3 2 30 30 H 1.08999 * 110.70644 * 99.92853 * 5 3 2 31 31 H 1.08998 * 110.87595 * 277.39215 * 6 5 3 32 32 H 1.09004 * 111.05894 * 153.65142 * 6 5 3 33 33 H 1.08999 * 110.36979 * 204.18843 * 7 6 5 34 34 H 1.08997 * 110.46574 * 81.89699 * 7 6 5 35 35 H 1.08008 * 119.72492 * 359.97438 * 10 9 8 36 36 H 1.08002 * 119.89437 * 180.02562 * 11 10 9 37 37 H 0.96999 * 120.00029 * 354.79369 * 13 12 11 38 38 H 0.97006 * 119.99806 * 174.78394 * 13 12 11 39 39 H 0.97004 * 119.99948 * 179.97438 * 18 17 15 40 40 H 1.07998 * 120.11538 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5773 1.9992 0.8150 5 6 1.7110 2.1156 -1.3490 6 6 2.9742 2.9781 -1.6235 7 6 4.0991 2.0814 -1.0487 8 7 3.5065 1.4559 0.1526 9 6 4.0028 0.1619 0.3404 10 6 4.0319 -0.7331 -0.7306 11 6 4.5191 -2.0137 -0.5619 12 6 4.9857 -2.4256 0.6781 13 7 5.4751 -3.7142 0.8466 14 6 4.9596 -1.5261 1.7709 15 6 5.4302 -1.9317 3.0369 16 1 5.2755 -2.9472 3.3706 17 6 6.0974 -1.0188 3.8605 18 7 6.3418 -1.3220 5.1102 19 14 6.6396 0.6329 3.1768 20 1 5.5282 1.6097 3.3027 21 1 7.8168 1.1216 3.9387 22 1 7.0048 0.4804 1.7455 23 6 4.4666 -0.2222 1.5822 24 1 -0.3634 -1.0242 -0.0838 25 1 -0.3633 0.5848 -0.8451 26 1 -0.3633 0.4396 0.9289 27 1 1.8932 -0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.5782 1.3678 -2.1307 30 1 0.8245 2.7436 -1.2603 31 1 2.9201 3.9269 -1.0899 32 1 3.1125 3.1410 -2.6924 33 1 4.9635 2.6862 -0.7745 34 1 4.3851 1.3180 -1.7722 35 1 3.6702 -0.4210 -1.6993 36 1 4.5371 -2.6972 -1.3978 37 1 5.4219 -4.3523 0.1180 38 1 5.8702 -3.9761 1.6930 39 1 6.8048 -0.6891 5.6812 40 1 4.4463 0.4742 2.4074 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127253086.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:00 Heat of formation + Delta-G solvation = 25.283102 kcal Electronic energy + Delta-G solvation = -20298.797727 eV Core-core repulsion = 17498.676597 eV Total energy + Delta-G solvation = -2800.121130 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.93143 -37.39499 -33.53984 -33.35706 -32.93863 -30.63475 -30.26538 -27.44037 -26.43493 -24.83202 -22.88146 -21.66775 -21.26593 -20.16532 -18.79270 -17.27804 -16.26399 -15.90201 -15.54204 -15.34604 -14.48287 -14.27429 -13.69430 -13.33690 -13.12766 -13.02742 -12.83051 -12.39012 -12.09424 -11.97869 -11.61016 -11.49437 -11.19808 -11.05607 -10.90554 -10.86659 -10.67290 -10.53509 -10.30668 -10.09345 -9.71456 -9.67455 -9.11161 -8.97389 -7.76413 -7.54182 -6.73296 -6.36792 -4.23553 2.64510 2.76042 3.31399 3.33724 3.46990 4.16120 4.50521 4.60153 4.94107 5.01258 5.10790 5.15218 5.42190 5.47021 5.58301 5.69205 5.76041 5.77758 5.94951 5.99347 6.00954 6.11836 6.15537 6.22529 6.27436 6.33313 6.43543 6.67145 6.69572 6.77754 6.85794 7.22229 7.30487 7.32449 7.45074 7.51145 7.76292 7.98119 8.28319 8.42231 8.58315 8.83723 8.96784 9.00574 10.30873 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019893 B = 0.007993 C = 0.006976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.211835 B = 3502.379051 C = 4012.589686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C 0.081 3.919 4 H 0.077 0.923 5 C -0.134 4.134 6 C -0.130 4.130 7 C 0.043 3.957 8 N -0.488 5.488 9 C 0.070 3.930 10 C -0.203 4.203 11 C -0.173 4.173 12 C 0.138 3.862 13 N -0.880 5.880 14 C 0.047 3.953 15 C -0.456 4.456 16 H 0.086 0.914 17 C 0.084 3.916 18 N -0.831 5.831 19 Si 0.911 3.089 20 H -0.264 1.264 21 H -0.299 1.299 22 H -0.251 1.251 23 C -0.180 4.180 24 H 0.049 0.951 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.379 0.621 38 H 0.397 0.603 39 H 0.281 0.719 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.132 4.154 -10.581 12.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.177 4.177 3 C -0.026 4.026 4 H 0.095 0.905 5 C -0.173 4.173 6 C -0.168 4.168 7 C -0.084 4.084 8 N -0.209 5.209 9 C -0.025 4.025 10 C -0.225 4.225 11 C -0.198 4.198 12 C 0.035 3.965 13 N -0.421 5.421 14 C 0.042 3.958 15 C -0.487 4.487 16 H 0.104 0.896 17 C -0.132 4.132 18 N -0.458 5.458 19 Si 0.739 3.261 20 H -0.190 1.190 21 H -0.227 1.227 22 H -0.175 1.175 23 C -0.201 4.201 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.204 0.796 38 H 0.226 0.774 39 H 0.091 0.909 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.911 4.539 -9.848 12.350 hybrid contribution 0.212 -0.086 -0.817 0.849 sum -5.699 4.453 -10.666 12.887 Atomic orbital electron populations 1.21772 0.96741 1.01036 1.01037 1.22283 0.94650 0.96756 1.04051 1.22406 0.88099 0.95866 0.96248 0.90483 1.22910 0.97823 0.98816 0.97735 1.22744 0.95113 0.98751 1.00228 1.23137 0.97236 0.96919 0.91142 1.61342 1.03901 1.18624 1.37007 1.18175 1.02099 0.88055 0.94149 1.20525 1.09811 0.94746 0.97413 1.19916 1.08284 0.96631 0.94950 1.17972 0.98875 0.86897 0.92741 1.42008 1.71188 1.10955 1.17917 1.17343 0.95217 0.91098 0.92184 1.19009 1.32633 0.99396 0.97642 0.89617 1.25987 0.93769 0.99602 0.93816 1.69679 1.33314 1.37201 1.05571 0.86349 0.77646 0.81642 0.80472 1.18992 1.22673 1.17507 1.20767 1.06062 0.97322 0.95994 0.93149 0.93372 0.93131 0.90264 0.90894 0.91608 0.91400 0.91100 0.91433 0.90967 0.92774 0.89091 0.89081 0.79591 0.77411 0.90919 0.87151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.83 37.15 0.37 -1.61 16 2 C -0.14 -2.30 3.86 -26.74 -0.10 -2.40 16 3 C 0.08 1.31 3.37 -66.72 -0.22 1.08 16 4 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 5 C -0.13 -1.75 5.61 -24.77 -0.14 -1.89 16 6 C -0.13 -1.68 7.08 -24.45 -0.17 -1.85 16 7 C 0.04 0.70 6.51 -2.30 -0.01 0.68 16 8 N -0.49 -9.35 5.15 -160.46 -0.83 -10.18 16 9 C 0.07 1.51 3.15 -83.78 -0.26 1.24 16 10 C -0.20 -4.10 6.16 -39.14 -0.24 -4.34 16 11 C -0.17 -3.56 9.87 -39.46 -0.39 -3.95 16 12 C 0.14 3.08 6.79 -83.22 -0.56 2.51 16 13 N -0.88 -16.85 8.97 32.75 0.29 -16.55 16 14 C 0.05 1.18 5.05 -106.66 -0.54 0.65 16 15 C -0.46 -12.21 8.77 -37.91 -0.33 -12.54 16 16 H 0.09 2.37 7.32 -52.49 -0.38 1.99 16 17 C 0.08 2.25 5.47 -17.33 -0.09 2.15 16 18 N -0.83 -22.82 13.93 55.55 0.77 -22.04 16 19 Si 0.91 22.07 24.53 -169.99 -4.17 17.90 16 20 H -0.26 -6.39 6.44 56.52 0.36 -6.02 16 21 H -0.30 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.25 -6.28 7.00 56.52 0.40 -5.88 16 23 C -0.18 -4.40 6.82 -38.75 -0.26 -4.66 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.56 7.39 -51.93 -0.38 0.18 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 1.57 6.83 -51.93 -0.35 1.21 16 28 H 0.07 1.24 5.49 -51.93 -0.29 0.95 16 29 H 0.07 0.84 7.75 -51.93 -0.40 0.44 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.05 0.90 5.92 -51.93 -0.31 0.59 16 35 H 0.09 1.67 6.42 -52.48 -0.34 1.34 16 36 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.38 5.97 8.84 -40.82 -0.36 5.60 16 38 H 0.40 7.75 7.29 -40.82 -0.30 7.45 16 39 H 0.28 7.12 8.30 -40.82 -0.34 6.78 16 40 H 0.11 2.84 4.72 -52.49 -0.25 2.59 16 LS Contribution 302.78 15.07 4.56 4.56 Total: -1.00 -27.96 302.78 -8.27 -36.23 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -5.92 Total: 14.99 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: -2.98 Total: -24.91 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: 0.24 Total: -48.78 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.17 Total: 17.90 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.96 -8.27 -36.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127253086.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.512 kcal (2) G-P(sol) polarization free energy of solvation -27.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds