Wall clock time and date at job start Mon Mar 30 2020 07:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47563 * 2 1 4 4 H 1.09007 * 109.87888 * 52.65473 * 3 2 1 5 5 C 1.54317 * 109.88923 * 291.62015 * 3 2 1 6 6 C 1.55397 * 102.89802 * 218.40391 * 5 3 2 7 7 C 1.54913 * 101.74172 * 35.48218 * 6 5 3 8 8 N 1.47448 * 109.88946 * 173.68088 * 3 2 1 9 9 C 1.39854 * 110.99983 * 356.14898 * 8 3 2 10 10 C 1.39599 * 119.83746 * 72.55327 * 9 8 3 11 11 C 1.38050 * 120.55179 * 179.97438 * 10 9 8 12 12 C 1.38740 * 120.22059 * 0.02562 * 11 10 9 13 13 N 1.38865 * 120.16597 * 179.97438 * 12 11 10 14 14 C 1.41564 * 119.67180 * 0.02562 * 12 11 10 15 15 C 1.41025 * 120.26644 * 179.97438 * 14 12 11 16 16 H 1.08000 * 120.00154 * 324.41425 * 15 14 12 17 17 C 1.39888 * 119.99821 * 144.42166 * 15 14 12 18 18 N 1.30901 * 119.99838 * 168.91002 * 17 15 14 19 19 Si 1.86804 * 119.99924 * 348.90589 * 17 15 14 20 20 H 1.48495 * 109.47130 * 86.88034 * 19 17 15 21 21 H 1.48499 * 109.46890 * 206.88046 * 19 17 15 22 22 H 1.48502 * 109.47066 * 326.87961 * 19 17 15 23 23 C 1.38006 * 119.84018 * 252.27467 * 9 8 3 24 24 H 1.08997 * 109.47528 * 175.31965 * 1 2 3 25 25 H 1.09004 * 109.46915 * 55.31975 * 1 2 3 26 26 H 1.09000 * 109.46999 * 295.32559 * 1 2 3 27 27 H 1.09002 * 109.46995 * 120.00286 * 2 1 3 28 28 H 1.09000 * 109.47137 * 239.99877 * 2 1 3 29 29 H 1.08994 * 110.70938 * 336.69003 * 5 3 2 30 30 H 1.08999 * 110.70644 * 99.92853 * 5 3 2 31 31 H 1.08998 * 110.87595 * 277.39215 * 6 5 3 32 32 H 1.09004 * 111.05894 * 153.65142 * 6 5 3 33 33 H 1.08999 * 110.36979 * 204.18843 * 7 6 5 34 34 H 1.08997 * 110.46574 * 81.89699 * 7 6 5 35 35 H 1.08008 * 119.72492 * 359.97438 * 10 9 8 36 36 H 1.08002 * 119.89437 * 180.02562 * 11 10 9 37 37 H 0.96999 * 120.00029 * 354.79369 * 13 12 11 38 38 H 0.97006 * 119.99806 * 174.78394 * 13 12 11 39 39 H 0.97004 * 119.99948 * 179.97438 * 18 17 15 40 40 H 1.07998 * 120.11538 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5773 1.9992 0.8150 5 6 1.7110 2.1156 -1.3490 6 6 2.9742 2.9781 -1.6235 7 6 4.0991 2.0814 -1.0487 8 7 3.5065 1.4559 0.1526 9 6 4.0028 0.1619 0.3404 10 6 4.0319 -0.7331 -0.7306 11 6 4.5191 -2.0137 -0.5619 12 6 4.9857 -2.4256 0.6781 13 7 5.4751 -3.7142 0.8466 14 6 4.9596 -1.5261 1.7709 15 6 5.4302 -1.9317 3.0369 16 1 5.2755 -2.9472 3.3706 17 6 6.0974 -1.0188 3.8605 18 7 6.3418 -1.3220 5.1102 19 14 6.6396 0.6329 3.1768 20 1 5.5282 1.6097 3.3027 21 1 7.8168 1.1216 3.9387 22 1 7.0048 0.4804 1.7455 23 6 4.4666 -0.2222 1.5822 24 1 -0.3634 -1.0242 -0.0838 25 1 -0.3633 0.5848 -0.8451 26 1 -0.3633 0.4396 0.9289 27 1 1.8932 -0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.5782 1.3678 -2.1307 30 1 0.8245 2.7436 -1.2603 31 1 2.9201 3.9269 -1.0899 32 1 3.1125 3.1410 -2.6924 33 1 4.9635 2.6862 -0.7745 34 1 4.3851 1.3180 -1.7722 35 1 3.6702 -0.4210 -1.6993 36 1 4.5371 -2.6972 -1.3978 37 1 5.4219 -4.3523 0.1180 38 1 5.8702 -3.9761 1.6930 39 1 6.8048 -0.6891 5.6812 40 1 4.4463 0.4742 2.4074 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127253086.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:00 Heat of formation + Delta-G solvation = 6.931802 kcal Electronic energy + Delta-G solvation = -20299.593499 eV Core-core repulsion = 17498.676597 eV Total energy + Delta-G solvation = -2800.916902 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.38648 -39.02029 -35.33892 -35.03260 -34.15458 -32.29866 -31.86779 -28.60885 -28.10952 -26.62869 -24.13571 -23.39240 -22.60414 -21.55798 -20.32900 -19.11888 -17.95575 -17.53207 -17.08724 -16.65693 -16.27685 -15.53789 -15.13724 -14.99283 -14.71515 -14.58111 -14.25026 -13.98680 -13.62528 -13.47081 -13.05351 -12.90950 -12.74954 -12.58074 -12.51497 -12.19684 -12.05488 -11.98033 -11.65142 -11.62699 -11.32178 -11.30183 -10.95472 -10.71425 -9.39537 -9.17168 -8.73904 -8.07721 -6.22940 0.84668 0.98222 1.33122 1.39119 1.49591 2.18366 2.70313 3.16488 3.53057 3.54011 3.80415 3.90472 3.98618 4.30867 4.35751 4.41293 4.49503 4.52965 4.64293 4.67966 4.86393 4.89725 4.94587 4.98775 5.01644 5.10957 5.15633 5.24479 5.35452 5.38342 5.41868 5.43951 5.56697 5.65856 5.69274 5.98333 6.16719 6.24358 6.28735 6.67034 6.82000 6.96184 7.15196 7.44771 8.35679 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019893 B = 0.007993 C = 0.006976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.211835 B = 3502.379051 C = 4012.589686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.133 4.133 3 C 0.076 3.924 4 H 0.070 0.930 5 C -0.124 4.124 6 C -0.119 4.119 7 C 0.036 3.964 8 N -0.515 5.515 9 C 0.069 3.931 10 C -0.178 4.178 11 C -0.174 4.174 12 C 0.134 3.866 13 N -0.870 5.870 14 C 0.015 3.985 15 C -0.475 4.475 16 H 0.062 0.938 17 C 0.047 3.953 18 N -0.874 5.874 19 Si 0.963 3.037 20 H -0.271 1.271 21 H -0.288 1.288 22 H -0.264 1.264 23 C -0.191 4.191 24 H 0.053 0.947 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.035 0.965 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.121 0.879 36 H 0.126 0.874 37 H 0.397 0.603 38 H 0.394 0.606 39 H 0.285 0.715 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.590 5.247 -14.314 17.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.171 4.171 3 C -0.031 4.031 4 H 0.088 0.912 5 C -0.162 4.162 6 C -0.157 4.157 7 C -0.091 4.091 8 N -0.236 5.236 9 C -0.026 4.026 10 C -0.199 4.199 11 C -0.199 4.199 12 C 0.030 3.970 13 N -0.412 5.412 14 C 0.009 3.991 15 C -0.507 4.507 16 H 0.080 0.920 17 C -0.163 4.163 18 N -0.504 5.504 19 Si 0.790 3.210 20 H -0.197 1.197 21 H -0.216 1.216 22 H -0.188 1.188 23 C -0.212 4.212 24 H 0.072 0.928 25 H 0.091 0.909 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.138 0.862 36 H 0.144 0.856 37 H 0.226 0.774 38 H 0.222 0.778 39 H 0.095 0.905 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.373 5.614 -13.608 16.464 hybrid contribution 0.527 -0.442 0.128 0.700 sum -6.846 5.172 -13.480 15.979 Atomic orbital electron populations 1.21717 0.94221 1.01864 1.02140 1.22153 0.96893 0.96427 1.01645 1.22493 0.86226 0.95981 0.98369 0.91239 1.22870 0.98810 0.99069 0.95464 1.22723 0.93173 0.98022 1.01750 1.23237 0.98364 0.97346 0.90144 1.61242 1.05807 1.17335 1.39213 1.18228 1.01440 0.89582 0.93357 1.20894 1.06886 0.94073 0.98045 1.20315 1.07089 0.97377 0.95086 1.18159 0.98568 0.87483 0.92812 1.41950 1.70329 1.10365 1.18508 1.17441 0.96870 0.92316 0.92458 1.18995 1.34117 0.98503 0.99084 0.92028 1.26478 0.94064 1.01710 0.94037 1.69718 1.35837 1.38411 1.06396 0.85558 0.77214 0.79145 0.79078 1.19683 1.21581 1.18807 1.20787 1.06771 0.96864 0.96813 0.92758 0.90868 0.93172 0.94588 0.91106 0.90587 0.88994 0.90614 0.88627 0.91740 0.92820 0.86171 0.85625 0.77379 0.77755 0.90546 0.89406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 9.83 71.98 0.71 -2.68 16 2 C -0.13 -4.12 3.86 30.59 0.12 -4.01 16 3 C 0.08 2.28 3.37 45.26 0.15 2.43 16 4 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 5 C -0.12 -2.65 5.61 31.87 0.18 -2.47 16 6 C -0.12 -2.53 7.08 32.07 0.23 -2.31 16 7 C 0.04 1.06 6.51 86.78 0.57 1.63 16 8 N -0.51 -18.95 5.15 -661.57 -3.41 -22.36 16 9 C 0.07 2.91 3.15 38.13 0.12 3.03 16 10 C -0.18 -6.66 6.16 22.55 0.14 -6.52 16 11 C -0.17 -6.67 9.87 22.35 0.22 -6.45 16 12 C 0.13 5.89 6.79 38.97 0.26 6.15 16 13 N -0.87 -32.70 8.97 -50.31 -0.45 -33.15 16 14 C 0.01 0.76 5.05 -21.18 -0.11 0.65 16 15 C -0.47 -26.72 8.77 23.35 0.20 -26.52 16 16 H 0.06 3.63 7.32 -2.91 -0.02 3.61 16 17 C 0.05 2.67 5.47 85.23 0.47 3.14 16 18 N -0.87 -50.45 13.93 21.82 0.30 -50.14 16 19 Si 0.96 47.63 24.53 68.60 1.68 49.32 16 20 H -0.27 -13.42 6.44 99.48 0.64 -12.78 16 21 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 22 H -0.26 -13.34 7.00 99.48 0.70 -12.64 16 23 C -0.19 -9.52 6.82 22.81 0.16 -9.36 16 24 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.07 1.40 7.39 -2.39 -0.02 1.38 16 26 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.04 1.42 6.83 -2.39 -0.02 1.40 16 28 H 0.07 2.17 5.49 -2.39 -0.01 2.16 16 29 H 0.08 1.51 7.75 -2.39 -0.02 1.49 16 30 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.05 1.59 5.92 -2.39 -0.01 1.57 16 35 H 0.12 3.85 6.42 -2.91 -0.02 3.83 16 36 H 0.13 3.96 8.06 -2.91 -0.02 3.94 16 37 H 0.40 11.73 8.84 -92.71 -0.82 10.91 16 38 H 0.39 15.64 7.29 -92.70 -0.68 14.97 16 39 H 0.28 15.15 8.30 -92.71 -0.77 14.38 16 40 H 0.09 4.71 4.72 -2.91 -0.01 4.69 16 Total: -1.00 -63.32 302.78 1.02 -62.29 By element: Atomic # 1 Polarization: 37.84 SS G_CDS: -0.51 Total: 37.32 kcal Atomic # 6 Polarization: -46.68 SS G_CDS: 3.41 Total: -43.27 kcal Atomic # 7 Polarization: -102.10 SS G_CDS: -3.56 Total: -105.66 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 1.68 Total: 49.32 kcal Total: -63.32 1.02 -62.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127253086.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.223 kcal (2) G-P(sol) polarization free energy of solvation -63.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds