Wall clock time and date at job start Mon Mar 30 2020 07:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47424 * 2 1 4 4 H 1.09001 * 109.87361 * 303.47970 * 3 2 1 5 5 C 1.54319 * 109.88526 * 64.67311 * 3 2 1 6 6 C 1.55141 * 103.01416 * 141.69415 * 5 3 2 7 7 C 1.54910 * 101.65337 * 324.34644 * 6 5 3 8 8 N 1.47440 * 109.89014 * 182.44772 * 3 2 1 9 9 C 1.39849 * 110.99978 * 3.84959 * 8 3 2 10 10 C 1.39602 * 119.84093 * 282.91071 * 9 8 3 11 11 C 1.38055 * 120.54795 * 180.02562 * 10 9 8 12 12 C 1.38735 * 120.22347 * 0.25756 * 11 10 9 13 13 N 1.38866 * 120.16180 * 179.72755 * 12 11 10 14 14 C 1.41559 * 119.66910 * 359.43260 * 12 11 10 15 15 C 1.41026 * 120.26534 * 180.26823 * 14 12 11 16 16 H 1.08006 * 120.00191 * 26.59046 * 15 14 12 17 17 C 1.39896 * 120.00164 * 206.59010 * 15 14 12 18 18 N 1.30901 * 119.99553 * 13.93045 * 17 15 14 19 19 Si 1.86796 * 120.00057 * 193.92803 * 17 15 14 20 20 H 1.48507 * 109.47226 * 89.99907 * 19 17 15 21 21 H 1.48502 * 109.47261 * 209.99837 * 19 17 15 22 22 H 1.48497 * 109.47230 * 330.00096 * 19 17 15 23 23 C 1.38003 * 119.83921 * 102.89439 * 9 8 3 24 24 H 1.09000 * 109.47176 * 63.88530 * 1 2 3 25 25 H 1.09001 * 109.47220 * 183.88583 * 1 2 3 26 26 H 1.08997 * 109.46987 * 303.88142 * 1 2 3 27 27 H 1.09003 * 109.47247 * 240.00079 * 2 1 3 28 28 H 1.08996 * 109.47593 * 120.00298 * 2 1 3 29 29 H 1.08995 * 110.70667 * 260.07371 * 5 3 2 30 30 H 1.08998 * 110.70726 * 23.13750 * 5 3 2 31 31 H 1.08998 * 110.99404 * 82.43665 * 6 5 3 32 32 H 1.09005 * 110.98954 * 206.21738 * 6 5 3 33 33 H 1.09001 * 110.37136 * 278.24086 * 7 6 5 34 34 H 1.09000 * 110.37275 * 155.90396 * 7 6 5 35 35 H 1.07995 * 119.72754 * 0.02562 * 10 9 8 36 36 H 1.08009 * 119.88844 * 179.97438 * 11 10 9 37 37 H 0.96998 * 120.00368 * 5.94520 * 13 12 11 38 38 H 0.97007 * 119.99385 * 185.94809 * 13 12 11 39 39 H 0.97001 * 119.99619 * 174.98222 * 18 17 15 40 40 H 1.08003 * 120.11749 * 359.97258 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6305 1.9804 -0.8550 5 6 1.6298 2.1443 1.3117 6 6 2.8699 3.0149 1.6448 7 6 4.0285 2.1065 1.1631 8 7 3.5133 1.4536 -0.0592 9 6 4.0196 0.1562 -0.1858 10 6 4.0670 -0.6829 0.9289 11 6 4.5644 -1.9661 0.8206 12 6 5.0285 -2.4345 -0.4000 13 7 5.5338 -3.7236 -0.5063 14 6 4.9786 -1.5940 -1.5380 15 6 5.4417 -2.0592 -2.7861 16 1 5.4302 -3.1164 -3.0065 17 6 5.9160 -1.1512 -3.7389 18 7 6.1879 0.0809 -3.3903 19 14 6.1614 -1.6971 -5.5084 20 1 4.9107 -1.4672 -6.2754 21 1 7.2670 -0.9158 -6.1187 22 1 6.5015 -3.1423 -5.5379 23 6 4.4695 -0.2887 -1.4123 24 1 -0.3633 0.4523 -0.9227 25 1 -0.3634 -1.0253 0.0696 26 1 -0.3633 0.5729 0.8531 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 0.7507 2.7695 1.1556 30 1 1.4462 1.4131 2.0989 31 1 2.8506 3.9515 1.0876 32 1 2.9393 3.2019 2.7164 33 1 4.2656 1.3598 1.9210 34 1 4.9091 2.7055 0.9309 35 1 3.7118 -0.3251 1.8839 36 1 4.5966 -2.6061 1.6901 37 1 5.4841 -4.3280 0.2508 38 1 5.9365 -4.0197 -1.3377 39 1 6.5850 0.6901 -4.0323 40 1 4.4306 0.3629 -2.2727 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127253359.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:03 Heat of formation + Delta-G solvation = 25.275040 kcal Electronic energy + Delta-G solvation = -20180.389794 eV Core-core repulsion = 17380.268315 eV Total energy + Delta-G solvation = -2800.121480 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.67356 -37.12512 -33.51051 -33.27241 -32.79057 -30.31892 -29.47921 -27.27508 -26.26438 -24.82951 -22.78381 -21.44570 -20.92254 -20.01623 -18.69879 -17.02202 -16.02253 -15.50968 -15.39958 -15.19060 -14.61266 -14.13356 -13.52732 -13.25053 -12.91234 -12.70108 -12.55189 -12.22621 -11.91494 -11.64682 -11.35852 -11.26621 -11.03189 -11.03008 -10.95615 -10.77088 -10.70584 -10.40790 -10.10996 -9.97728 -9.80952 -9.46418 -9.10056 -8.91074 -7.50664 -7.26839 -6.56785 -6.11338 -4.07968 2.85152 3.14238 3.16423 3.18932 3.26519 4.03622 4.71730 4.72426 5.09661 5.16128 5.28350 5.33256 5.58808 5.65828 5.76953 5.83222 5.90143 5.91235 6.08234 6.13157 6.22735 6.28832 6.32850 6.40456 6.46432 6.49631 6.60007 6.81787 6.97110 7.09351 7.15097 7.30784 7.58473 7.63574 7.74432 7.79640 8.11515 8.23995 8.40251 8.74179 8.90624 8.96696 9.16336 9.23050 10.39604 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.020586 B = 0.006824 C = 0.006242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.853613 B = 4102.202603 C = 4484.893411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.138 4.138 3 C 0.081 3.919 4 H 0.074 0.926 5 C -0.135 4.135 6 C -0.131 4.131 7 C 0.043 3.957 8 N -0.479 5.479 9 C 0.054 3.946 10 C -0.215 4.215 11 C -0.176 4.176 12 C 0.114 3.886 13 N -0.886 5.886 14 C 0.063 3.937 15 C -0.465 4.465 16 H 0.071 0.929 17 C 0.074 3.926 18 N -0.799 5.799 19 Si 0.905 3.095 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.267 1.267 23 C -0.109 4.109 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.375 0.625 38 H 0.391 0.609 39 H 0.277 0.723 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.008 1.603 5.651 8.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.176 4.176 3 C -0.026 4.026 4 H 0.092 0.908 5 C -0.173 4.173 6 C -0.169 4.169 7 C -0.084 4.084 8 N -0.199 5.199 9 C -0.041 4.041 10 C -0.236 4.236 11 C -0.200 4.200 12 C 0.013 3.987 13 N -0.427 5.427 14 C 0.058 3.942 15 C -0.496 4.496 16 H 0.089 0.911 17 C -0.143 4.143 18 N -0.425 5.425 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.191 1.191 23 C -0.131 4.131 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.200 0.800 38 H 0.219 0.781 39 H 0.088 0.912 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.827 2.221 5.071 8.037 hybrid contribution 0.153 -0.995 -0.067 1.009 sum -5.674 1.226 5.004 7.664 Atomic orbital electron populations 1.21780 0.96988 1.00884 1.00922 1.22205 0.94319 0.96996 1.04070 1.22396 0.88316 0.95467 0.96414 0.90795 1.22859 0.97756 0.98624 0.98061 1.22701 0.95308 0.98682 1.00185 1.23124 0.97319 0.96517 0.91442 1.61339 1.04624 1.17790 1.36193 1.18329 1.03199 0.88072 0.94471 1.20443 1.10971 0.95090 0.97136 1.19804 1.08921 0.96516 0.94750 1.17986 1.00556 0.86883 0.93277 1.41913 1.71318 1.12578 1.16916 1.17172 0.94184 0.91849 0.91008 1.19121 1.38564 0.94081 0.97827 0.91109 1.25770 0.93877 0.94399 1.00208 1.69825 1.31600 1.05255 1.35843 0.86380 0.78451 0.79447 0.82658 1.19596 1.20559 1.19097 1.20927 0.99962 0.96504 0.95657 0.93261 0.93292 0.93396 0.90553 0.90830 0.91681 0.91743 0.91200 0.91677 0.92900 0.91003 0.89764 0.89851 0.79967 0.78068 0.91215 0.85461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.79 37.16 0.36 -1.74 16 2 C -0.14 -2.44 3.96 -26.73 -0.11 -2.55 16 3 C 0.08 1.42 3.43 -66.72 -0.23 1.19 16 4 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 5 C -0.13 -1.92 5.42 -24.91 -0.14 -2.05 16 6 C -0.13 -1.84 7.08 -24.59 -0.17 -2.02 16 7 C 0.04 0.77 6.51 -2.30 -0.01 0.75 16 8 N -0.48 -9.81 5.16 -160.46 -0.83 -10.63 16 9 C 0.05 1.24 3.21 -83.78 -0.27 0.97 16 10 C -0.21 -4.70 6.34 -39.14 -0.25 -4.95 16 11 C -0.18 -3.91 9.87 -39.46 -0.39 -4.30 16 12 C 0.11 2.70 6.79 -83.23 -0.56 2.13 16 13 N -0.89 -17.66 8.97 32.75 0.29 -17.37 16 14 C 0.06 1.65 5.58 -106.66 -0.60 1.06 16 15 C -0.46 -12.08 8.44 -37.91 -0.32 -12.40 16 16 H 0.07 1.75 6.80 -52.48 -0.36 1.40 16 17 C 0.07 1.86 5.21 -17.33 -0.09 1.77 16 18 N -0.80 -21.11 10.84 55.55 0.60 -20.50 16 19 Si 0.91 19.06 29.59 -169.99 -5.03 14.03 16 20 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 21 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 23 C -0.11 -2.83 8.12 -38.75 -0.31 -3.14 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.61 7.25 -51.93 -0.38 0.23 16 27 H 0.08 1.60 6.89 -51.93 -0.36 1.24 16 28 H 0.07 1.37 5.66 -51.93 -0.29 1.08 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.91 7.78 -51.93 -0.40 0.50 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.96 5.63 -51.93 -0.29 0.67 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.08 1.72 6.41 -52.49 -0.34 1.38 16 36 H 0.08 1.67 8.06 -52.48 -0.42 1.24 16 37 H 0.38 6.30 8.84 -40.82 -0.36 5.94 16 38 H 0.39 7.69 7.13 -40.82 -0.29 7.40 16 39 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 40 H 0.13 3.57 6.14 -52.48 -0.32 3.25 16 LS Contribution 307.50 15.07 4.63 4.63 Total: -1.00 -27.34 307.50 -9.32 -36.66 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: -5.91 Total: 18.47 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: -3.09 Total: -25.29 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 0.07 Total: -48.51 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.34 -9.32 -36.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127253359.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.934 kcal (2) G-P(sol) polarization free energy of solvation -27.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds