Wall clock time and date at job start Mon Mar 30 2020 07:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47424 * 2 1 4 4 H 1.09001 * 109.87361 * 303.47970 * 3 2 1 5 5 C 1.54319 * 109.88526 * 64.67311 * 3 2 1 6 6 C 1.55141 * 103.01416 * 141.69415 * 5 3 2 7 7 C 1.54910 * 101.65337 * 324.34644 * 6 5 3 8 8 N 1.47440 * 109.89014 * 182.44772 * 3 2 1 9 9 C 1.39849 * 110.99978 * 3.84959 * 8 3 2 10 10 C 1.39602 * 119.84093 * 282.91071 * 9 8 3 11 11 C 1.38055 * 120.54795 * 180.02562 * 10 9 8 12 12 C 1.38735 * 120.22347 * 0.25756 * 11 10 9 13 13 N 1.38866 * 120.16180 * 179.72755 * 12 11 10 14 14 C 1.41559 * 119.66910 * 359.43260 * 12 11 10 15 15 C 1.41026 * 120.26534 * 180.26823 * 14 12 11 16 16 H 1.08006 * 120.00191 * 26.59046 * 15 14 12 17 17 C 1.39896 * 120.00164 * 206.59010 * 15 14 12 18 18 N 1.30901 * 119.99553 * 13.93045 * 17 15 14 19 19 Si 1.86796 * 120.00057 * 193.92803 * 17 15 14 20 20 H 1.48507 * 109.47226 * 89.99907 * 19 17 15 21 21 H 1.48502 * 109.47261 * 209.99837 * 19 17 15 22 22 H 1.48497 * 109.47230 * 330.00096 * 19 17 15 23 23 C 1.38003 * 119.83921 * 102.89439 * 9 8 3 24 24 H 1.09000 * 109.47176 * 63.88530 * 1 2 3 25 25 H 1.09001 * 109.47220 * 183.88583 * 1 2 3 26 26 H 1.08997 * 109.46987 * 303.88142 * 1 2 3 27 27 H 1.09003 * 109.47247 * 240.00079 * 2 1 3 28 28 H 1.08996 * 109.47593 * 120.00298 * 2 1 3 29 29 H 1.08995 * 110.70667 * 260.07371 * 5 3 2 30 30 H 1.08998 * 110.70726 * 23.13750 * 5 3 2 31 31 H 1.08998 * 110.99404 * 82.43665 * 6 5 3 32 32 H 1.09005 * 110.98954 * 206.21738 * 6 5 3 33 33 H 1.09001 * 110.37136 * 278.24086 * 7 6 5 34 34 H 1.09000 * 110.37275 * 155.90396 * 7 6 5 35 35 H 1.07995 * 119.72754 * 0.02562 * 10 9 8 36 36 H 1.08009 * 119.88844 * 179.97438 * 11 10 9 37 37 H 0.96998 * 120.00368 * 5.94520 * 13 12 11 38 38 H 0.97007 * 119.99385 * 185.94809 * 13 12 11 39 39 H 0.97001 * 119.99619 * 174.98222 * 18 17 15 40 40 H 1.08003 * 120.11749 * 359.97258 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6305 1.9804 -0.8550 5 6 1.6298 2.1443 1.3117 6 6 2.8699 3.0149 1.6448 7 6 4.0285 2.1065 1.1631 8 7 3.5133 1.4536 -0.0592 9 6 4.0196 0.1562 -0.1858 10 6 4.0670 -0.6829 0.9289 11 6 4.5644 -1.9661 0.8206 12 6 5.0285 -2.4345 -0.4000 13 7 5.5338 -3.7236 -0.5063 14 6 4.9786 -1.5940 -1.5380 15 6 5.4417 -2.0592 -2.7861 16 1 5.4302 -3.1164 -3.0065 17 6 5.9160 -1.1512 -3.7389 18 7 6.1879 0.0809 -3.3903 19 14 6.1614 -1.6971 -5.5084 20 1 4.9107 -1.4672 -6.2754 21 1 7.2670 -0.9158 -6.1187 22 1 6.5015 -3.1423 -5.5379 23 6 4.4695 -0.2887 -1.4123 24 1 -0.3633 0.4523 -0.9227 25 1 -0.3634 -1.0253 0.0696 26 1 -0.3633 0.5729 0.8531 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 0.7507 2.7695 1.1556 30 1 1.4462 1.4131 2.0989 31 1 2.8506 3.9515 1.0876 32 1 2.9393 3.2019 2.7164 33 1 4.2656 1.3598 1.9210 34 1 4.9091 2.7055 0.9309 35 1 3.7118 -0.3251 1.8839 36 1 4.5966 -2.6061 1.6901 37 1 5.4841 -4.3280 0.2508 38 1 5.9365 -4.0197 -1.3377 39 1 6.5850 0.6901 -4.0323 40 1 4.4306 0.3629 -2.2727 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127253359.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:02 Heat of formation + Delta-G solvation = 8.899700 kcal Electronic energy + Delta-G solvation = -20181.099882 eV Core-core repulsion = 17380.268315 eV Total energy + Delta-G solvation = -2800.831568 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.21489 -38.82727 -35.38088 -34.89047 -34.11708 -31.82887 -31.36119 -28.56948 -28.01895 -26.63850 -24.12269 -23.12183 -22.50468 -21.49794 -20.30295 -18.82483 -17.72505 -17.25615 -16.96968 -16.63583 -16.30957 -15.48580 -14.97451 -14.84641 -14.44193 -14.36341 -14.11444 -13.82139 -13.41739 -13.17180 -12.96321 -12.79073 -12.76086 -12.62009 -12.30567 -12.17615 -11.99079 -11.94912 -11.64321 -11.48872 -11.29847 -11.19100 -10.98237 -10.61210 -9.16610 -9.06799 -8.45142 -7.88422 -6.02442 1.06177 1.34013 1.40083 1.51414 1.53828 2.26329 2.85877 3.28864 3.65932 3.77929 3.86845 3.97047 4.02640 4.33760 4.42338 4.52377 4.55584 4.62337 4.68860 4.75049 4.90105 4.98930 5.00167 5.07864 5.14806 5.21932 5.24554 5.32469 5.39450 5.40600 5.43645 5.57984 5.74164 5.86222 5.99333 6.20956 6.29076 6.43474 6.51118 6.95916 7.03673 7.14097 7.36584 7.56966 8.52760 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.020586 B = 0.006824 C = 0.006242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.853613 B = 4102.202603 C = 4484.893411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.130 4.130 3 C 0.076 3.924 4 H 0.066 0.934 5 C -0.124 4.124 6 C -0.118 4.118 7 C 0.037 3.963 8 N -0.506 5.506 9 C 0.060 3.940 10 C -0.204 4.204 11 C -0.183 4.183 12 C 0.107 3.893 13 N -0.875 5.875 14 C 0.028 3.972 15 C -0.491 4.491 16 H 0.075 0.925 17 C 0.029 3.971 18 N -0.837 5.837 19 Si 0.976 3.024 20 H -0.271 1.271 21 H -0.275 1.275 22 H -0.256 1.256 23 C -0.135 4.135 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.032 0.968 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.048 0.952 34 H 0.061 0.939 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.393 0.607 38 H 0.392 0.608 39 H 0.278 0.722 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.265 1.634 7.257 10.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.168 4.168 3 C -0.030 4.030 4 H 0.084 0.916 5 C -0.162 4.162 6 C -0.156 4.156 7 C -0.090 4.090 8 N -0.227 5.227 9 C -0.035 4.035 10 C -0.225 4.225 11 C -0.207 4.207 12 C 0.004 3.996 13 N -0.417 5.417 14 C 0.023 3.977 15 C -0.523 4.523 16 H 0.093 0.907 17 C -0.184 4.184 18 N -0.465 5.465 19 Si 0.798 3.202 20 H -0.196 1.196 21 H -0.200 1.200 22 H -0.180 1.180 23 C -0.157 4.157 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.091 0.909 27 H 0.051 0.949 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.124 0.876 36 H 0.130 0.870 37 H 0.221 0.779 38 H 0.221 0.779 39 H 0.089 0.911 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.088 2.224 6.704 10.006 hybrid contribution 0.508 -0.983 -0.460 1.198 sum -6.580 1.242 6.244 9.155 Atomic orbital electron populations 1.21717 0.94046 1.01804 1.02231 1.22050 0.96866 0.96553 1.01337 1.22467 0.86442 0.95677 0.98400 0.91554 1.22813 0.98730 0.98769 0.95877 1.22674 0.93095 0.97908 1.01923 1.23191 0.98629 0.96868 0.90291 1.61229 1.06661 1.16603 1.38219 1.18348 1.02158 0.89306 0.93686 1.20676 1.09551 0.94783 0.97509 1.20149 1.08330 0.97072 0.95180 1.18137 1.00451 0.87872 0.93117 1.41799 1.70545 1.11635 1.17730 1.17503 0.95302 0.92653 0.92257 1.19375 1.39653 0.94492 0.98754 0.90721 1.26595 0.93332 0.94287 1.04140 1.69943 1.32873 1.06465 1.37178 0.85302 0.78231 0.79416 0.77233 1.19647 1.19970 1.18000 1.20800 1.02201 0.96697 0.96011 0.92893 0.92798 0.90917 0.94947 0.91741 0.88967 0.90912 0.90549 0.88783 0.93342 0.92103 0.87620 0.87047 0.77934 0.77943 0.91126 0.88694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 9.79 71.98 0.71 -3.01 16 2 C -0.13 -4.54 3.96 30.60 0.12 -4.42 16 3 C 0.08 2.61 3.43 45.26 0.16 2.77 16 4 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 5 C -0.12 -3.10 5.42 31.78 0.17 -2.93 16 6 C -0.12 -2.96 7.08 31.98 0.23 -2.73 16 7 C 0.04 1.28 6.51 86.77 0.57 1.84 16 8 N -0.51 -20.91 5.16 -661.58 -3.41 -24.32 16 9 C 0.06 2.83 3.21 38.14 0.12 2.96 16 10 C -0.20 -8.80 6.34 22.56 0.14 -8.66 16 11 C -0.18 -7.99 9.87 22.35 0.22 -7.77 16 12 C 0.11 5.08 6.79 38.97 0.26 5.34 16 13 N -0.87 -34.41 8.97 -50.31 -0.45 -34.86 16 14 C 0.03 1.53 5.58 -21.18 -0.12 1.41 16 15 C -0.49 -26.51 8.44 23.36 0.20 -26.31 16 16 H 0.07 3.80 6.80 -2.91 -0.02 3.78 16 17 C 0.03 1.50 5.21 85.23 0.44 1.94 16 18 N -0.84 -46.50 10.84 21.82 0.24 -46.26 16 19 Si 0.98 40.22 29.59 68.60 2.03 42.25 16 20 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 21 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 22 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 23 C -0.14 -7.40 8.12 22.81 0.19 -7.22 16 24 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.07 1.58 7.25 -2.39 -0.02 1.56 16 27 H 0.03 1.40 6.89 -2.39 -0.02 1.38 16 28 H 0.06 2.34 5.66 -2.39 -0.01 2.32 16 29 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.07 1.74 7.78 -2.39 -0.02 1.72 16 31 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 32 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.05 1.69 5.63 -2.39 -0.01 1.68 16 34 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.11 4.08 6.41 -2.91 -0.02 4.07 16 36 H 0.11 4.17 8.06 -2.91 -0.02 4.15 16 37 H 0.39 12.57 8.84 -92.71 -0.82 11.75 16 38 H 0.39 15.39 7.13 -92.70 -0.66 14.72 16 39 H 0.28 14.34 8.30 -92.71 -0.77 13.57 16 40 H 0.10 5.74 6.14 -2.91 -0.02 5.72 16 Total: -1.00 -62.19 307.50 1.38 -60.81 By element: Atomic # 1 Polarization: 49.59 SS G_CDS: -0.42 Total: 49.17 kcal Atomic # 6 Polarization: -50.19 SS G_CDS: 3.40 Total: -46.78 kcal Atomic # 7 Polarization: -101.81 SS G_CDS: -3.63 Total: -105.44 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.25 kcal Total: -62.19 1.38 -60.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127253359.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.709 kcal (2) G-P(sol) polarization free energy of solvation -62.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds