Wall clock time and date at job start Mon Mar 30 2020 06:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 110.05640 * 2 1 4 4 C 1.39860 * 120.00241 * 58.45282 * 3 2 1 5 5 C 1.39599 * 119.83280 * 6.20927 * 4 3 2 6 6 C 1.38067 * 120.54337 * 179.71508 * 5 4 3 7 7 C 1.38735 * 120.22039 * 0.55985 * 6 5 4 8 8 N 1.38857 * 120.16104 * 179.74072 * 7 6 5 9 9 C 1.41557 * 119.67542 * 359.72026 * 7 6 5 10 10 C 1.41024 * 120.27226 * 179.97438 * 9 7 6 11 11 H 1.07998 * 119.99472 * 329.09799 * 10 9 7 12 12 C 1.39887 * 120.00285 * 149.09716 * 10 9 7 13 13 N 1.30907 * 119.99886 * 162.55549 * 12 10 9 14 14 Si 1.86794 * 119.99808 * 342.55212 * 12 10 9 15 15 H 1.48500 * 109.47163 * 94.91537 * 14 12 10 16 16 H 1.48504 * 109.46923 * 214.91199 * 14 12 10 17 17 H 1.48505 * 109.47523 * 334.91162 * 14 12 10 18 18 C 1.37998 * 119.83985 * 186.48193 * 4 3 2 19 19 C 1.53875 * 110.03190 * 238.58284 * 2 1 3 20 20 C 1.54272 * 106.63990 * 240.69118 * 19 2 1 21 21 C 1.54967 * 104.15692 * 336.44679 * 20 19 2 22 22 C 1.54264 * 110.03066 * 121.41790 * 2 1 3 23 23 H 1.09000 * 109.46995 * 187.19274 * 1 2 3 24 24 H 1.08998 * 109.47257 * 307.20003 * 1 2 3 25 25 H 1.09001 * 109.47127 * 67.19179 * 1 2 3 26 26 H 0.96994 * 120.00252 * 238.45740 * 3 2 1 27 27 H 1.07999 * 119.73030 * 0.02562 * 5 4 3 28 28 H 1.08002 * 119.88993 * 180.27492 * 6 5 4 29 29 H 0.97005 * 120.00234 * 185.24620 * 8 7 6 30 30 H 0.97001 * 120.00573 * 5.24776 * 8 7 6 31 31 H 0.96998 * 119.99600 * 179.97438 * 13 12 10 32 32 H 1.07997 * 120.11952 * 0.02562 * 18 4 3 33 33 H 1.08994 * 110.03692 * 0.02562 * 19 2 1 34 34 H 1.09000 * 110.02823 * 121.38552 * 19 2 1 35 35 H 1.08992 * 110.48337 * 95.09121 * 20 19 2 36 36 H 1.09000 * 110.48811 * 217.74070 * 20 19 2 37 37 H 1.08994 * 110.72159 * 279.56831 * 21 20 19 38 38 H 1.09000 * 110.92236 * 156.29457 * 21 20 19 39 39 H 1.09009 * 110.48574 * 261.57513 * 22 2 1 40 40 H 1.09004 * 110.48976 * 24.08164 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0324 1.3761 0.0000 4 6 1.6770 2.2504 1.0322 5 6 0.9519 1.7749 2.1263 6 6 0.5984 2.6237 3.1562 7 6 0.9513 3.9646 3.1083 8 7 0.5905 4.8183 4.1422 9 6 1.6815 4.4580 2.0005 10 6 2.0464 5.8188 1.9386 11 1 1.4164 6.5679 2.3950 12 6 3.2242 6.1982 1.2863 13 7 3.4007 7.4443 0.9262 14 14 4.5452 4.9267 0.9291 15 1 4.3681 4.4026 -0.4490 16 1 5.8844 5.5567 1.0507 17 1 4.4334 3.8100 1.9016 18 6 2.0398 3.5799 0.9614 19 6 2.0571 -0.7536 -1.2337 20 6 2.8882 -1.9407 -0.7045 21 6 3.3136 -1.5007 0.7192 22 6 2.0584 -0.7555 1.2368 23 1 -0.3633 -1.0196 0.1287 24 1 -0.3634 0.6213 0.8185 25 1 -0.3633 0.3984 -0.9473 26 1 2.6115 1.6810 -0.7159 27 1 0.6695 0.7334 2.1699 28 1 0.0412 2.2436 3.9997 29 1 0.7711 5.7688 4.0718 30 1 0.1578 4.4644 4.9349 31 1 4.2176 7.7075 0.4742 32 1 2.5965 3.9452 0.1111 33 1 1.2230 -1.1189 -1.8327 34 1 2.6860 -0.0951 -1.8328 35 1 2.2783 -2.8428 -0.6585 36 1 3.7644 -2.1029 -1.3323 37 1 4.1710 -0.8291 0.6752 38 1 3.5343 -2.3659 1.3443 39 1 2.3296 -0.0536 2.0255 40 1 1.3133 -1.4644 1.5981 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127258862.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:37 Heat of formation + Delta-G solvation = 16.364545 kcal Electronic energy + Delta-G solvation = -19984.055614 eV Core-core repulsion = 17183.547747 eV Total energy + Delta-G solvation = -2800.507868 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.41804 -37.56364 -34.43158 -33.35032 -31.77726 -30.36194 -29.63616 -28.65310 -26.28502 -24.78454 -24.27869 -21.66062 -20.55353 -19.94097 -18.92635 -17.19159 -16.43684 -15.77317 -15.48692 -15.04395 -15.02346 -14.31537 -13.76809 -13.28193 -13.10403 -12.86284 -12.55645 -12.48952 -12.22308 -11.91001 -11.74038 -11.31499 -11.11630 -11.04316 -10.91959 -10.68601 -10.65381 -10.53607 -10.38766 -10.29148 -9.87104 -9.61483 -9.43712 -8.99257 -7.86570 -7.44209 -6.77189 -5.75699 -4.15926 2.79574 3.05864 3.22485 3.39730 3.46265 4.13910 4.23579 4.66097 4.71673 4.80560 4.99684 5.31944 5.46299 5.52213 5.55513 5.62948 5.70337 5.75531 5.89194 5.95834 6.02619 6.07721 6.19440 6.21452 6.26674 6.41647 6.45873 6.59782 6.66397 6.78260 6.91194 7.22845 7.34039 7.47727 7.59595 7.79074 8.03069 8.34375 8.52338 8.63921 8.74476 8.92937 9.11611 9.17672 10.26563 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021778 B = 0.007108 C = 0.005946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.400822 B = 3938.148904 C = 4707.641681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.188 3.812 3 N -0.753 5.753 4 C 0.201 3.799 5 C -0.261 4.261 6 C -0.146 4.146 7 C 0.097 3.903 8 N -0.886 5.886 9 C 0.081 3.919 10 C -0.451 4.451 11 H 0.085 0.915 12 C 0.084 3.916 13 N -0.825 5.825 14 Si 0.916 3.084 15 H -0.277 1.277 16 H -0.299 1.299 17 H -0.246 1.246 18 C -0.272 4.272 19 C -0.125 4.125 20 C -0.122 4.122 21 C -0.123 4.123 22 C -0.141 4.141 23 H 0.051 0.949 24 H 0.082 0.918 25 H 0.050 0.950 26 H 0.385 0.615 27 H 0.106 0.894 28 H 0.089 0.911 29 H 0.392 0.608 30 H 0.376 0.624 31 H 0.280 0.720 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.088 0.912 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.269 -14.224 -1.431 14.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.100 3.900 3 N -0.387 5.387 4 C 0.102 3.898 5 C -0.285 4.285 6 C -0.171 4.171 7 C -0.005 4.005 8 N -0.429 5.429 9 C 0.075 3.925 10 C -0.481 4.481 11 H 0.103 0.897 12 C -0.132 4.132 13 N -0.451 5.451 14 Si 0.744 3.256 15 H -0.203 1.203 16 H -0.227 1.227 17 H -0.169 1.169 18 C -0.296 4.296 19 C -0.163 4.163 20 C -0.160 4.160 21 C -0.161 4.161 22 C -0.180 4.180 23 H 0.070 0.930 24 H 0.100 0.900 25 H 0.070 0.930 26 H 0.219 0.781 27 H 0.123 0.877 28 H 0.107 0.893 29 H 0.221 0.779 30 H 0.201 0.799 31 H 0.090 0.910 32 H 0.115 0.885 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.106 0.894 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.214 -14.162 -1.548 14.298 hybrid contribution 0.789 -0.013 -0.326 0.854 sum -0.425 -14.175 -1.874 14.304 Atomic orbital electron populations 1.22480 0.95541 1.01343 1.03360 1.20535 0.92997 0.82759 0.93737 1.44699 1.57038 1.09458 1.27480 1.17302 0.95705 0.88734 0.88040 1.19978 1.13041 0.98543 0.96918 1.19852 1.05546 0.92464 0.99242 1.17762 1.02888 0.89619 0.90193 1.41856 1.71969 1.09318 1.19710 1.17132 0.92584 0.93138 0.89653 1.19065 1.06320 0.91708 1.31005 0.89700 1.26033 0.99613 0.95864 0.91695 1.69740 1.26587 1.18614 1.30142 0.86224 0.77940 0.81419 0.80003 1.20329 1.22726 1.16897 1.20235 1.15653 0.92391 1.01368 1.22437 0.99608 0.97043 0.97165 1.22343 0.99156 0.97648 0.96818 1.22485 0.98492 0.99465 0.95637 1.23044 0.96837 0.99064 0.99027 0.92976 0.89950 0.93039 0.78121 0.87666 0.89301 0.77931 0.79865 0.90974 0.88475 0.91269 0.91529 0.91830 0.92051 0.91648 0.92107 0.89362 0.91752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 7.98 37.16 0.30 -2.14 16 2 C 0.19 2.75 0.93 -130.70 -0.12 2.63 16 3 N -0.75 -13.59 5.29 -44.97 -0.24 -13.82 16 4 C 0.20 4.35 6.08 -83.77 -0.51 3.84 16 5 C -0.26 -5.40 6.53 -39.14 -0.26 -5.65 16 6 C -0.15 -3.12 9.87 -39.46 -0.39 -3.51 16 7 C 0.10 2.25 6.79 -83.23 -0.56 1.68 16 8 N -0.89 -17.69 8.97 32.74 0.29 -17.39 16 9 C 0.08 2.06 5.09 -106.66 -0.54 1.52 16 10 C -0.45 -12.24 8.93 -37.91 -0.34 -12.58 16 11 H 0.09 2.37 6.98 -52.49 -0.37 2.01 16 12 C 0.08 2.26 5.41 -17.33 -0.09 2.17 16 13 N -0.82 -22.63 13.93 55.55 0.77 -21.86 16 14 Si 0.92 21.84 24.53 -169.99 -4.17 17.67 16 15 H -0.28 -6.41 6.71 56.52 0.38 -6.03 16 16 H -0.30 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.25 -6.07 6.87 56.52 0.39 -5.68 16 18 C -0.27 -6.66 6.98 -38.75 -0.27 -6.93 16 19 C -0.12 -1.51 6.24 -25.61 -0.16 -1.67 16 20 C -0.12 -1.32 6.84 -25.03 -0.17 -1.49 16 21 C -0.12 -1.52 6.91 -24.70 -0.17 -1.69 16 22 C -0.14 -2.00 4.66 -25.08 -0.12 -2.12 16 23 H 0.05 0.63 7.98 -51.93 -0.41 0.22 16 24 H 0.08 1.36 5.03 -51.93 -0.26 1.09 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.39 6.75 8.08 -40.82 -0.33 6.42 16 27 H 0.11 1.94 4.11 -52.49 -0.22 1.72 16 28 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 29 H 0.39 7.93 7.13 -40.82 -0.29 7.64 16 30 H 0.38 6.26 8.84 -40.82 -0.36 5.90 16 31 H 0.28 7.06 8.30 -40.82 -0.34 6.72 16 32 H 0.10 2.42 4.81 -52.49 -0.25 2.17 16 33 H 0.07 0.76 7.67 -51.93 -0.40 0.36 16 34 H 0.07 0.82 7.44 -51.93 -0.39 0.43 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 1.49 5.82 -51.92 -0.30 1.19 16 40 H 0.06 0.82 7.75 -51.93 -0.40 0.42 16 LS Contribution 301.35 15.07 4.54 4.54 Total: -1.00 -28.25 301.35 -7.90 -36.14 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: -5.69 Total: 20.65 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: -3.41 Total: -25.93 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: 0.83 Total: -53.07 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.17 Total: 17.67 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.25 -7.90 -36.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127258862.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.507 kcal (2) G-P(sol) polarization free energy of solvation -28.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds