Wall clock time and date at job start Mon Mar 30 2020 06:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 110.05640 * 2 1 4 4 C 1.39860 * 120.00241 * 58.45282 * 3 2 1 5 5 C 1.39599 * 119.83280 * 6.20927 * 4 3 2 6 6 C 1.38067 * 120.54337 * 179.71508 * 5 4 3 7 7 C 1.38735 * 120.22039 * 0.55985 * 6 5 4 8 8 N 1.38857 * 120.16104 * 179.74072 * 7 6 5 9 9 C 1.41557 * 119.67542 * 359.72026 * 7 6 5 10 10 C 1.41024 * 120.27226 * 179.97438 * 9 7 6 11 11 H 1.07998 * 119.99472 * 329.09799 * 10 9 7 12 12 C 1.39887 * 120.00285 * 149.09716 * 10 9 7 13 13 N 1.30907 * 119.99886 * 162.55549 * 12 10 9 14 14 Si 1.86794 * 119.99808 * 342.55212 * 12 10 9 15 15 H 1.48500 * 109.47163 * 94.91537 * 14 12 10 16 16 H 1.48504 * 109.46923 * 214.91199 * 14 12 10 17 17 H 1.48505 * 109.47523 * 334.91162 * 14 12 10 18 18 C 1.37998 * 119.83985 * 186.48193 * 4 3 2 19 19 C 1.53875 * 110.03190 * 238.58284 * 2 1 3 20 20 C 1.54272 * 106.63990 * 240.69118 * 19 2 1 21 21 C 1.54967 * 104.15692 * 336.44679 * 20 19 2 22 22 C 1.54264 * 110.03066 * 121.41790 * 2 1 3 23 23 H 1.09000 * 109.46995 * 187.19274 * 1 2 3 24 24 H 1.08998 * 109.47257 * 307.20003 * 1 2 3 25 25 H 1.09001 * 109.47127 * 67.19179 * 1 2 3 26 26 H 0.96994 * 120.00252 * 238.45740 * 3 2 1 27 27 H 1.07999 * 119.73030 * 0.02562 * 5 4 3 28 28 H 1.08002 * 119.88993 * 180.27492 * 6 5 4 29 29 H 0.97005 * 120.00234 * 185.24620 * 8 7 6 30 30 H 0.97001 * 120.00573 * 5.24776 * 8 7 6 31 31 H 0.96998 * 119.99600 * 179.97438 * 13 12 10 32 32 H 1.07997 * 120.11952 * 0.02562 * 18 4 3 33 33 H 1.08994 * 110.03692 * 0.02562 * 19 2 1 34 34 H 1.09000 * 110.02823 * 121.38552 * 19 2 1 35 35 H 1.08992 * 110.48337 * 95.09121 * 20 19 2 36 36 H 1.09000 * 110.48811 * 217.74070 * 20 19 2 37 37 H 1.08994 * 110.72159 * 279.56831 * 21 20 19 38 38 H 1.09000 * 110.92236 * 156.29457 * 21 20 19 39 39 H 1.09009 * 110.48574 * 261.57513 * 22 2 1 40 40 H 1.09004 * 110.48976 * 24.08164 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0324 1.3761 0.0000 4 6 1.6770 2.2504 1.0322 5 6 0.9519 1.7749 2.1263 6 6 0.5984 2.6237 3.1562 7 6 0.9513 3.9646 3.1083 8 7 0.5905 4.8183 4.1422 9 6 1.6815 4.4580 2.0005 10 6 2.0464 5.8188 1.9386 11 1 1.4164 6.5679 2.3950 12 6 3.2242 6.1982 1.2863 13 7 3.4007 7.4443 0.9262 14 14 4.5452 4.9267 0.9291 15 1 4.3681 4.4026 -0.4490 16 1 5.8844 5.5567 1.0507 17 1 4.4334 3.8100 1.9016 18 6 2.0398 3.5799 0.9614 19 6 2.0571 -0.7536 -1.2337 20 6 2.8882 -1.9407 -0.7045 21 6 3.3136 -1.5007 0.7192 22 6 2.0584 -0.7555 1.2368 23 1 -0.3633 -1.0196 0.1287 24 1 -0.3634 0.6213 0.8185 25 1 -0.3633 0.3984 -0.9473 26 1 2.6115 1.6810 -0.7159 27 1 0.6695 0.7334 2.1699 28 1 0.0412 2.2436 3.9997 29 1 0.7711 5.7688 4.0718 30 1 0.1578 4.4644 4.9349 31 1 4.2176 7.7075 0.4742 32 1 2.5965 3.9452 0.1111 33 1 1.2230 -1.1189 -1.8327 34 1 2.6860 -0.0951 -1.8328 35 1 2.2783 -2.8428 -0.6585 36 1 3.7644 -2.1029 -1.3323 37 1 4.1710 -0.8291 0.6752 38 1 3.5343 -2.3659 1.3443 39 1 2.3296 -0.0536 2.0255 40 1 1.3133 -1.4644 1.5981 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127258862.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:37 Heat of formation + Delta-G solvation = -1.733675 kcal Electronic energy + Delta-G solvation = -19984.840412 eV Core-core repulsion = 17183.547747 eV Total energy + Delta-G solvation = -2801.292665 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.76216 -39.12722 -35.92244 -35.26149 -33.23922 -32.14113 -30.99777 -29.70193 -27.90001 -26.56467 -25.44508 -23.41669 -21.83135 -21.30735 -20.31240 -18.99771 -18.03786 -17.47277 -16.94549 -16.55465 -16.22121 -15.95209 -15.00440 -14.87954 -14.55313 -14.42048 -14.02668 -13.92781 -13.80921 -13.46198 -13.25666 -12.86460 -12.62270 -12.44033 -12.30719 -12.07919 -11.94070 -11.82395 -11.69385 -11.45486 -11.37960 -11.22316 -11.17312 -10.86466 -9.41862 -9.31097 -8.76727 -7.46381 -6.12794 0.94248 1.21439 1.27962 1.52476 1.55643 2.19665 2.77202 2.87356 3.64351 3.70025 3.73687 3.83706 4.03727 4.42824 4.45435 4.52542 4.56166 4.65710 4.71936 4.83795 4.92525 4.96943 5.00897 5.02482 5.09281 5.14898 5.20205 5.25746 5.38722 5.46209 5.49765 5.53330 5.56041 5.74812 5.83992 6.03309 6.25088 6.36635 6.70133 6.93633 7.01170 7.18489 7.33912 7.59868 8.32531 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021778 B = 0.007108 C = 0.005946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.400822 B = 3938.148904 C = 4707.641681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.178 3.822 3 N -0.751 5.751 4 C 0.196 3.804 5 C -0.242 4.242 6 C -0.147 4.147 7 C 0.082 3.918 8 N -0.879 5.879 9 C 0.048 3.952 10 C -0.474 4.474 11 H 0.060 0.940 12 C 0.046 3.954 13 N -0.867 5.867 14 Si 0.969 3.031 15 H -0.269 1.269 16 H -0.290 1.290 17 H -0.261 1.261 18 C -0.282 4.282 19 C -0.122 4.122 20 C -0.114 4.114 21 C -0.123 4.123 22 C -0.141 4.141 23 H 0.080 0.920 24 H 0.059 0.941 25 H 0.048 0.952 26 H 0.386 0.614 27 H 0.134 0.866 28 H 0.120 0.880 29 H 0.389 0.611 30 H 0.393 0.607 31 H 0.285 0.715 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.047 0.953 38 H 0.077 0.923 39 H 0.058 0.942 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.725 -18.099 -1.671 18.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.091 3.909 3 N -0.384 5.384 4 C 0.095 3.905 5 C -0.265 4.265 6 C -0.172 4.172 7 C -0.020 4.020 8 N -0.422 5.422 9 C 0.043 3.957 10 C -0.506 4.506 11 H 0.078 0.922 12 C -0.165 4.165 13 N -0.496 5.496 14 Si 0.796 3.204 15 H -0.195 1.195 16 H -0.218 1.218 17 H -0.185 1.185 18 C -0.307 4.307 19 C -0.160 4.160 20 C -0.152 4.152 21 C -0.160 4.160 22 C -0.180 4.180 23 H 0.099 0.901 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.220 0.780 27 H 0.151 0.849 28 H 0.138 0.862 29 H 0.217 0.783 30 H 0.222 0.778 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.066 0.934 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.684 -18.070 -1.787 18.236 hybrid contribution 0.772 0.963 -0.206 1.252 sum -0.912 -17.107 -1.992 17.247 Atomic orbital electron populations 1.22448 0.95059 1.02629 1.02301 1.20884 0.93365 0.81067 0.95585 1.44875 1.56641 1.10483 1.26356 1.17383 0.95432 0.88363 0.89338 1.20409 1.10601 0.99787 0.95712 1.20263 1.04960 0.91656 1.00279 1.17973 1.02832 0.90846 0.90390 1.41773 1.71710 1.08925 1.19776 1.17300 0.94365 0.92806 0.91240 1.19066 1.06840 0.92237 1.32418 0.92228 1.26596 1.00903 0.97160 0.91841 1.69777 1.27601 1.19798 1.32431 0.85408 0.76357 0.79050 0.79597 1.19491 1.21793 1.18519 1.20325 1.15725 0.93729 1.00891 1.22440 1.00338 0.97199 0.96047 1.22329 0.99633 0.97602 0.95593 1.22474 0.96959 0.99535 0.97061 1.23011 0.98266 0.98939 0.97786 0.90109 0.92181 0.93267 0.78048 0.84859 0.86197 0.78308 0.77843 0.90458 0.89632 0.89623 0.91931 0.89884 0.90970 0.93403 0.90417 0.92289 0.89773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.20 7.98 71.98 0.57 -3.63 16 2 C 0.18 4.66 0.93 4.33 0.00 4.66 16 3 N -0.75 -25.81 5.29 -296.18 -1.57 -27.38 16 4 C 0.20 8.25 6.08 38.13 0.23 8.48 16 5 C -0.24 -9.44 6.53 22.56 0.15 -9.29 16 6 C -0.15 -5.96 9.87 22.35 0.22 -5.74 16 7 C 0.08 3.79 6.79 38.97 0.26 4.06 16 8 N -0.88 -34.93 8.97 -50.32 -0.45 -35.39 16 9 C 0.05 2.53 5.09 -21.18 -0.11 2.42 16 10 C -0.47 -26.95 8.93 23.35 0.21 -26.74 16 11 H 0.06 3.55 6.98 -2.91 -0.02 3.53 16 12 C 0.05 2.59 5.41 85.23 0.46 3.05 16 13 N -0.87 -49.68 13.93 21.82 0.30 -49.38 16 14 Si 0.97 46.43 24.53 68.60 1.68 48.11 16 15 H -0.27 -12.31 6.71 99.48 0.67 -11.64 16 16 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 17 H -0.26 -12.96 6.87 99.48 0.68 -12.28 16 18 C -0.28 -13.91 6.98 22.81 0.16 -13.75 16 19 C -0.12 -2.52 6.24 31.32 0.20 -2.32 16 20 C -0.11 -1.97 6.84 31.70 0.22 -1.76 16 21 C -0.12 -2.61 6.91 31.91 0.22 -2.39 16 22 C -0.14 -3.52 4.66 31.67 0.15 -3.38 16 23 H 0.08 1.58 7.98 -2.39 -0.02 1.56 16 24 H 0.06 1.78 5.03 -2.39 -0.01 1.77 16 25 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.39 13.04 8.08 -92.71 -0.75 12.29 16 27 H 0.13 4.45 4.11 -2.91 -0.01 4.44 16 28 H 0.12 4.09 8.06 -2.91 -0.02 4.06 16 29 H 0.39 16.19 7.13 -92.70 -0.66 15.53 16 30 H 0.39 12.59 8.84 -92.71 -0.82 11.77 16 31 H 0.29 14.96 8.30 -92.71 -0.77 14.19 16 32 H 0.09 4.34 4.81 -2.91 -0.01 4.32 16 33 H 0.09 1.51 7.67 -2.39 -0.02 1.49 16 34 H 0.06 1.35 7.44 -2.39 -0.02 1.33 16 35 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.06 1.83 5.82 -2.38 -0.01 1.82 16 40 H 0.08 1.77 7.75 -2.38 -0.02 1.75 16 Total: -1.00 -62.66 301.35 1.71 -60.95 By element: Atomic # 1 Polarization: 50.60 SS G_CDS: -1.21 Total: 49.39 kcal Atomic # 6 Polarization: -49.26 SS G_CDS: 2.94 Total: -46.31 kcal Atomic # 7 Polarization: -110.43 SS G_CDS: -1.71 Total: -112.14 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.68 Total: 48.11 kcal Total: -62.66 1.71 -60.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127258862.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.218 kcal (2) G-P(sol) polarization free energy of solvation -62.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds