Wall clock time and date at job start Mon Mar 30 2020 07:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47220 * 2 1 4 4 H 1.08999 * 110.90732 * 51.13549 * 3 2 1 5 5 C 1.55140 * 110.99450 * 287.26755 * 3 2 1 6 6 C 1.54312 * 103.02000 * 206.25863 * 5 3 2 7 7 N 1.47438 * 107.23496 * 22.28124 * 6 5 3 8 8 C 1.39856 * 110.99910 * 123.26130 * 7 6 5 9 9 C 1.39599 * 119.83685 * 292.42901 * 8 7 6 10 10 C 1.38056 * 120.54439 * 179.97438 * 9 8 7 11 11 C 1.38739 * 120.22664 * 0.02562 * 10 9 8 12 12 N 1.38860 * 120.16632 * 179.97438 * 11 10 9 13 13 C 1.41560 * 119.67021 * 0.02562 * 11 10 9 14 14 C 1.41029 * 120.26770 * 180.02562 * 13 11 10 15 15 H 1.08001 * 119.99674 * 332.71781 * 14 13 11 16 16 C 1.39887 * 119.99962 * 152.71886 * 14 13 11 17 17 N 1.30902 * 120.00000 * 161.88414 * 16 14 13 18 18 Si 1.86798 * 120.00006 * 341.88392 * 16 14 13 19 19 H 1.48499 * 109.47344 * 95.32702 * 18 16 14 20 20 H 1.48505 * 109.47102 * 215.32636 * 18 16 14 21 21 H 1.48502 * 109.47382 * 335.32402 * 18 16 14 22 22 C 1.38009 * 119.83611 * 112.15655 * 8 7 6 23 23 C 1.47839 * 108.56726 * 0.99058 * 7 6 5 24 24 H 1.09001 * 109.47794 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47167 * 300.00094 * 1 2 3 26 26 H 1.09009 * 109.47150 * 59.99852 * 1 2 3 27 27 H 1.09005 * 109.46732 * 239.99780 * 2 1 3 28 28 H 1.08992 * 109.46947 * 120.00272 * 2 1 3 29 29 H 1.09001 * 110.70504 * 87.87033 * 5 3 2 30 30 H 1.09009 * 110.85054 * 324.71037 * 5 3 2 31 31 H 1.09001 * 109.88520 * 262.87317 * 6 5 3 32 32 H 1.09006 * 109.89107 * 141.68987 * 6 5 3 33 33 H 1.07994 * 119.72658 * 359.97438 * 9 8 7 34 34 H 1.08004 * 119.88517 * 180.02562 * 10 9 8 35 35 H 0.97004 * 120.00341 * 5.19334 * 12 11 10 36 36 H 0.96998 * 120.00358 * 185.20037 * 12 11 10 37 37 H 0.97000 * 120.00121 * 180.02562 * 17 16 14 38 38 H 1.07991 * 120.12056 * 359.97438 * 22 8 7 39 39 H 1.09005 * 110.37266 * 94.73930 * 23 7 6 40 40 H 1.09002 * 110.37412 * 217.07503 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5673 2.0222 0.7928 5 6 1.8199 2.1098 -1.3831 6 6 2.9243 3.1866 -1.4292 7 7 3.9761 2.7744 -0.4819 8 6 5.2148 2.6696 -1.1227 9 6 5.4226 1.6683 -2.0730 10 6 6.6393 1.5519 -2.7149 11 6 7.6712 2.4312 -2.4206 12 7 8.8947 2.3126 -3.0666 13 6 7.4711 3.4494 -1.4577 14 6 8.5112 4.3505 -1.1493 15 1 9.5410 4.0488 -1.2716 16 6 8.2091 5.6350 -0.6849 17 7 9.1242 6.3408 -0.0702 18 14 6.4997 6.3430 -0.9419 19 1 5.6770 6.1032 0.2708 20 1 6.6011 7.8036 -1.1904 21 1 5.8620 5.6853 -2.1107 22 6 6.2238 3.5601 -0.8167 23 6 3.5833 1.4853 0.1260 24 1 -0.3635 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 0.8324 2.5679 -1.4372 30 1 1.9526 1.3870 -2.1882 31 1 2.5140 4.1515 -1.1311 32 1 3.3369 3.2519 -2.4361 33 1 4.6250 0.9792 -2.3080 34 1 6.7883 0.7735 -3.4487 35 1 9.0064 1.6631 -3.7784 36 1 9.6377 2.8791 -2.8060 37 1 8.9146 7.2313 0.2522 38 1 6.0578 4.3364 -0.0845 39 1 4.0320 0.6557 -0.4204 40 1 3.8794 1.4544 1.1746 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127528338.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:15 Heat of formation + Delta-G solvation = 15.813130 kcal Electronic energy + Delta-G solvation = -19689.316998 eV Core-core repulsion = 16888.785219 eV Total energy + Delta-G solvation = -2800.531779 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.50881 -37.54077 -34.63823 -33.45787 -32.45827 -30.34193 -29.70343 -28.39047 -26.30325 -24.76157 -22.91978 -21.65236 -21.50761 -19.91914 -19.23372 -17.30454 -16.37373 -15.92251 -15.60376 -15.31330 -14.52691 -14.31294 -13.59957 -13.49004 -13.14611 -13.03857 -12.91684 -12.50033 -12.30487 -11.98286 -11.85766 -11.69744 -11.50323 -11.17333 -11.04776 -10.68935 -10.60242 -10.48017 -10.46490 -10.36328 -9.82215 -9.64017 -9.14111 -9.03576 -7.75451 -7.60270 -6.83289 -6.43864 -4.22857 2.65772 2.79570 3.27421 3.31309 3.44299 4.11527 4.49605 4.54402 4.75057 4.88278 5.06592 5.13178 5.23462 5.37674 5.43248 5.49263 5.64009 5.74680 5.88020 5.90751 5.99726 6.01867 6.06322 6.11857 6.18091 6.23874 6.31692 6.38264 6.53957 6.69391 6.80864 7.22287 7.26023 7.33914 7.46632 7.48165 7.76441 7.98572 8.23589 8.43418 8.54841 8.80977 8.95331 8.99657 10.19541 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024423 B = 0.006225 C = 0.005342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.166651 B = 4496.969281 C = 5240.557392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C -0.099 4.099 4 H 0.080 0.920 5 C -0.133 4.133 6 C 0.046 3.954 7 N -0.491 5.491 8 C 0.069 3.931 9 C -0.217 4.217 10 C -0.168 4.168 11 C 0.131 3.869 12 N -0.881 5.881 13 C 0.051 3.949 14 C -0.448 4.448 15 H 0.086 0.914 16 C 0.085 3.915 17 N -0.818 5.818 18 Si 0.913 3.087 19 H -0.267 1.267 20 H -0.298 1.298 21 H -0.247 1.247 22 C -0.187 4.187 23 C 0.051 3.949 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.379 0.621 36 H 0.395 0.605 37 H 0.283 0.717 38 H 0.107 0.893 39 H 0.054 0.946 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.817 -7.807 -1.914 14.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.118 4.118 4 H 0.098 0.902 5 C -0.171 4.171 6 C -0.080 4.080 7 N -0.211 5.211 8 C -0.026 4.026 9 C -0.239 4.239 10 C -0.193 4.193 11 C 0.029 3.971 12 N -0.422 5.422 13 C 0.045 3.955 14 C -0.478 4.478 15 H 0.104 0.896 16 C -0.133 4.133 17 N -0.443 5.443 18 Si 0.740 3.260 19 H -0.193 1.193 20 H -0.226 1.226 21 H -0.170 1.170 22 C -0.209 4.209 23 C -0.075 4.075 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.204 0.796 36 H 0.224 0.776 37 H 0.093 0.907 38 H 0.125 0.875 39 H 0.072 0.928 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.675 -7.170 -1.355 13.767 hybrid contribution -0.379 -0.199 -0.843 0.945 sum -12.054 -7.369 -2.198 14.298 Atomic orbital electron populations 1.21763 0.95984 1.01192 1.01774 1.21464 0.95644 0.96016 1.01997 1.22371 0.96052 0.95789 0.97585 0.90162 1.22838 0.98969 0.98287 0.97049 1.22852 0.91371 0.98052 0.95763 1.61131 1.01056 1.28244 1.30695 1.18331 0.90010 0.97511 0.96734 1.20471 0.97267 1.02744 1.03438 1.19896 0.94189 1.00736 1.04492 1.17872 0.86665 0.97506 0.95076 1.41977 1.12006 1.45692 1.42566 1.17318 0.92997 0.93261 0.91914 1.19061 0.94555 0.96356 1.37815 0.89605 1.26051 0.99099 0.97064 0.91051 1.69722 1.36107 1.11535 1.26966 0.86296 0.82141 0.76060 0.81473 1.19324 1.22636 1.17033 1.20545 0.93724 1.02277 1.04324 1.23155 0.93284 0.91004 1.00094 0.93077 0.92834 0.92766 0.92042 0.91903 0.91409 0.91690 0.91343 0.92349 0.89319 0.89113 0.79555 0.77583 0.90723 0.87535 0.92765 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.81 37.16 0.36 -1.00 16 2 C -0.11 -1.22 5.44 -26.73 -0.15 -1.36 16 3 C -0.10 -1.28 3.00 -88.48 -0.27 -1.55 16 4 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 5 C -0.13 -1.76 5.89 -24.91 -0.15 -1.91 16 6 C 0.05 0.79 6.63 -2.84 -0.02 0.77 16 7 N -0.49 -9.66 5.15 -167.93 -0.87 -10.52 16 8 C 0.07 1.55 4.58 -83.77 -0.38 1.16 16 9 C -0.22 -4.60 8.13 -39.14 -0.32 -4.92 16 10 C -0.17 -3.58 9.87 -39.46 -0.39 -3.97 16 11 C 0.13 3.00 6.79 -83.23 -0.56 2.43 16 12 N -0.88 -17.09 8.97 32.75 0.29 -16.80 16 13 C 0.05 1.30 5.20 -106.65 -0.55 0.74 16 14 C -0.45 -12.05 9.03 -37.91 -0.34 -12.39 16 15 H 0.09 2.35 6.85 -52.49 -0.36 1.99 16 16 C 0.08 2.27 5.42 -17.33 -0.09 2.17 16 17 N -0.82 -22.22 13.93 55.55 0.77 -21.45 16 18 Si 0.91 21.94 24.43 -169.99 -4.15 17.79 16 19 H -0.27 -6.42 6.68 56.52 0.38 -6.05 16 20 H -0.30 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.25 -6.11 6.76 56.52 0.38 -5.72 16 22 C -0.19 -4.70 7.02 -38.75 -0.27 -4.98 16 23 C 0.05 0.85 5.98 -2.30 -0.01 0.83 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.49 7.75 -51.92 -0.40 0.09 16 27 H 0.06 0.67 7.98 -51.93 -0.41 0.26 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.85 7.92 -51.92 -0.41 0.43 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.06 1.06 7.27 -51.93 -0.38 0.69 16 33 H 0.09 1.71 7.27 -52.49 -0.38 1.32 16 34 H 0.09 1.70 8.06 -52.48 -0.42 1.27 16 35 H 0.38 6.06 8.84 -40.82 -0.36 5.70 16 36 H 0.40 7.72 7.06 -40.82 -0.29 7.43 16 37 H 0.28 7.04 8.30 -40.82 -0.34 6.70 16 38 H 0.11 2.78 4.32 -52.49 -0.23 2.55 16 39 H 0.05 0.92 6.15 -51.93 -0.32 0.60 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 310.56 15.07 4.68 4.68 Total: -1.00 -28.31 310.56 -8.52 -36.82 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -6.10 Total: 13.45 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: -3.14 Total: -23.97 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 0.20 Total: -48.77 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.15 Total: 17.79 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.31 -8.52 -36.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127528338.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.636 kcal (2) G-P(sol) polarization free energy of solvation -28.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds