Wall clock time and date at job start Mon Mar 30 2020 07:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47220 * 2 1 4 4 H 1.08999 * 110.90732 * 51.13549 * 3 2 1 5 5 C 1.55140 * 110.99450 * 287.26755 * 3 2 1 6 6 C 1.54312 * 103.02000 * 206.25863 * 5 3 2 7 7 N 1.47438 * 107.23496 * 22.28124 * 6 5 3 8 8 C 1.39856 * 110.99910 * 123.26130 * 7 6 5 9 9 C 1.39599 * 119.83685 * 292.42901 * 8 7 6 10 10 C 1.38056 * 120.54439 * 179.97438 * 9 8 7 11 11 C 1.38739 * 120.22664 * 0.02562 * 10 9 8 12 12 N 1.38860 * 120.16632 * 179.97438 * 11 10 9 13 13 C 1.41560 * 119.67021 * 0.02562 * 11 10 9 14 14 C 1.41029 * 120.26770 * 180.02562 * 13 11 10 15 15 H 1.08001 * 119.99674 * 332.71781 * 14 13 11 16 16 C 1.39887 * 119.99962 * 152.71886 * 14 13 11 17 17 N 1.30902 * 120.00000 * 161.88414 * 16 14 13 18 18 Si 1.86798 * 120.00006 * 341.88392 * 16 14 13 19 19 H 1.48499 * 109.47344 * 95.32702 * 18 16 14 20 20 H 1.48505 * 109.47102 * 215.32636 * 18 16 14 21 21 H 1.48502 * 109.47382 * 335.32402 * 18 16 14 22 22 C 1.38009 * 119.83611 * 112.15655 * 8 7 6 23 23 C 1.47839 * 108.56726 * 0.99058 * 7 6 5 24 24 H 1.09001 * 109.47794 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47167 * 300.00094 * 1 2 3 26 26 H 1.09009 * 109.47150 * 59.99852 * 1 2 3 27 27 H 1.09005 * 109.46732 * 239.99780 * 2 1 3 28 28 H 1.08992 * 109.46947 * 120.00272 * 2 1 3 29 29 H 1.09001 * 110.70504 * 87.87033 * 5 3 2 30 30 H 1.09009 * 110.85054 * 324.71037 * 5 3 2 31 31 H 1.09001 * 109.88520 * 262.87317 * 6 5 3 32 32 H 1.09006 * 109.89107 * 141.68987 * 6 5 3 33 33 H 1.07994 * 119.72658 * 359.97438 * 9 8 7 34 34 H 1.08004 * 119.88517 * 180.02562 * 10 9 8 35 35 H 0.97004 * 120.00341 * 5.19334 * 12 11 10 36 36 H 0.96998 * 120.00358 * 185.20037 * 12 11 10 37 37 H 0.97000 * 120.00121 * 180.02562 * 17 16 14 38 38 H 1.07991 * 120.12056 * 359.97438 * 22 8 7 39 39 H 1.09005 * 110.37266 * 94.73930 * 23 7 6 40 40 H 1.09002 * 110.37412 * 217.07503 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5673 2.0222 0.7928 5 6 1.8199 2.1098 -1.3831 6 6 2.9243 3.1866 -1.4292 7 7 3.9761 2.7744 -0.4819 8 6 5.2148 2.6696 -1.1227 9 6 5.4226 1.6683 -2.0730 10 6 6.6393 1.5519 -2.7149 11 6 7.6712 2.4312 -2.4206 12 7 8.8947 2.3126 -3.0666 13 6 7.4711 3.4494 -1.4577 14 6 8.5112 4.3505 -1.1493 15 1 9.5410 4.0488 -1.2716 16 6 8.2091 5.6350 -0.6849 17 7 9.1242 6.3408 -0.0702 18 14 6.4997 6.3430 -0.9419 19 1 5.6770 6.1032 0.2708 20 1 6.6011 7.8036 -1.1904 21 1 5.8620 5.6853 -2.1107 22 6 6.2238 3.5601 -0.8167 23 6 3.5833 1.4853 0.1260 24 1 -0.3635 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 0.8324 2.5679 -1.4372 30 1 1.9526 1.3870 -2.1882 31 1 2.5140 4.1515 -1.1311 32 1 3.3369 3.2519 -2.4361 33 1 4.6250 0.9792 -2.3080 34 1 6.7883 0.7735 -3.4487 35 1 9.0064 1.6631 -3.7784 36 1 9.6377 2.8791 -2.8060 37 1 8.9146 7.2313 0.2522 38 1 6.0578 4.3364 -0.0845 39 1 4.0320 0.6557 -0.4204 40 1 3.8794 1.4544 1.1746 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127528338.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:14 Heat of formation + Delta-G solvation = -2.125814 kcal Electronic energy + Delta-G solvation = -19690.094889 eV Core-core repulsion = 16888.785219 eV Total energy + Delta-G solvation = -2801.309670 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.98175 -39.13597 -35.94637 -35.36894 -33.86690 -32.20328 -31.00669 -29.58075 -27.91851 -26.58730 -23.87011 -23.45804 -22.93185 -21.06829 -20.81839 -19.17098 -18.09638 -17.58639 -16.97843 -16.72751 -16.36173 -15.29561 -15.07615 -14.94538 -14.81001 -14.39088 -14.20574 -14.13119 -13.88929 -13.49416 -13.31987 -13.03844 -12.77141 -12.68281 -12.55023 -12.31176 -12.04822 -11.76137 -11.60499 -11.55659 -11.44085 -11.32283 -11.02510 -10.75652 -9.48104 -9.23291 -8.82609 -8.17948 -6.21342 0.82029 0.97439 1.31285 1.38922 1.49008 2.16167 2.64020 3.15580 3.51275 3.52371 3.74349 3.80770 3.99823 4.29377 4.35254 4.41609 4.48580 4.54593 4.58689 4.71857 4.77117 4.86165 4.95609 4.97028 5.01461 5.02942 5.12474 5.22157 5.28339 5.37023 5.39796 5.43087 5.55428 5.63156 5.66573 5.97492 6.10549 6.18121 6.25123 6.61997 6.78735 6.91659 7.14053 7.43617 8.25711 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024423 B = 0.006225 C = 0.005342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.166651 B = 4496.969281 C = 5240.557392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 C -0.088 4.088 4 H 0.083 0.917 5 C -0.121 4.121 6 C 0.041 3.959 7 N -0.514 5.514 8 C 0.061 3.939 9 C -0.196 4.196 10 C -0.171 4.171 11 C 0.127 3.873 12 N -0.870 5.870 13 C 0.021 3.979 14 C -0.472 4.472 15 H 0.067 0.933 16 C 0.051 3.949 17 N -0.857 5.857 18 Si 0.963 3.037 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.260 1.260 22 C -0.202 4.202 23 C 0.048 3.952 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.043 0.957 33 H 0.116 0.884 34 H 0.126 0.874 35 H 0.398 0.602 36 H 0.394 0.606 37 H 0.288 0.712 38 H 0.089 0.911 39 H 0.051 0.949 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.470 -9.903 -2.992 17.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C -0.107 4.107 4 H 0.101 0.899 5 C -0.159 4.159 6 C -0.085 4.085 7 N -0.235 5.235 8 C -0.034 4.034 9 C -0.218 4.218 10 C -0.195 4.195 11 C 0.024 3.976 12 N -0.412 5.412 13 C 0.016 3.984 14 C -0.503 4.503 15 H 0.085 0.915 16 C -0.162 4.162 17 N -0.485 5.485 18 Si 0.790 3.210 19 H -0.200 1.200 20 H -0.214 1.214 21 H -0.184 1.184 22 C -0.224 4.224 23 C -0.078 4.078 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.134 0.866 34 H 0.144 0.856 35 H 0.227 0.773 36 H 0.223 0.777 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.069 0.931 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.323 -9.285 -2.456 17.245 hybrid contribution 0.361 0.245 -0.559 0.709 sum -13.962 -9.040 -3.015 16.904 Atomic orbital electron populations 1.21740 0.94495 1.02102 1.02102 1.21433 0.96843 0.94152 1.02243 1.22327 0.93289 0.97501 0.97554 0.89874 1.22790 0.98627 0.97199 0.97312 1.22913 0.91797 0.99536 0.94248 1.61061 1.00737 1.30260 1.31434 1.18465 0.90776 0.97091 0.97072 1.20851 0.97809 1.01712 1.01414 1.20294 0.93500 1.00918 1.04794 1.18071 0.88146 0.96872 0.94535 1.41914 1.10868 1.45868 1.42561 1.17463 0.93044 0.94420 0.93490 1.19085 0.94192 0.97245 1.39745 0.91463 1.26531 1.01204 0.97312 0.91113 1.69747 1.37348 1.12353 1.29094 0.85524 0.79281 0.75906 0.80285 1.19987 1.21354 1.18430 1.20626 0.94667 1.02736 1.04346 1.23223 0.95967 0.89334 0.99300 0.91951 0.92551 0.92419 0.91959 0.91589 0.89026 0.90902 0.91375 0.93841 0.86604 0.85643 0.77339 0.77748 0.90168 0.89369 0.93054 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.81 71.98 0.71 -1.41 16 2 C -0.11 -1.95 5.44 30.59 0.17 -1.78 16 3 C -0.09 -2.00 3.00 -9.41 -0.03 -2.03 16 4 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 5 C -0.12 -2.78 5.89 31.77 0.19 -2.60 16 6 C 0.04 1.33 6.63 86.65 0.57 1.90 16 7 N -0.51 -19.59 5.15 -685.21 -3.53 -23.12 16 8 C 0.06 2.69 4.58 38.14 0.17 2.86 16 9 C -0.20 -7.77 8.13 22.56 0.18 -7.58 16 10 C -0.17 -6.76 9.87 22.35 0.22 -6.54 16 11 C 0.13 5.70 6.79 38.97 0.26 5.96 16 12 N -0.87 -32.76 8.97 -50.31 -0.45 -33.21 16 13 C 0.02 1.11 5.20 -21.18 -0.11 1.00 16 14 C -0.47 -26.32 9.03 23.35 0.21 -26.11 16 15 H 0.07 3.86 6.85 -2.91 -0.02 3.84 16 16 C 0.05 2.85 5.42 85.23 0.46 3.31 16 17 N -0.86 -48.45 13.93 21.82 0.30 -48.14 16 18 Si 0.96 46.89 24.43 68.60 1.68 48.57 16 19 H -0.27 -13.35 6.68 99.48 0.66 -12.69 16 20 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 21 H -0.26 -13.01 6.76 99.48 0.67 -12.34 16 22 C -0.20 -10.28 7.02 22.81 0.16 -10.11 16 23 C 0.05 1.49 5.98 86.77 0.52 2.00 16 24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 0.80 7.75 -2.38 -0.02 0.78 16 27 H 0.06 1.12 7.98 -2.38 -0.02 1.10 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.07 1.59 7.92 -2.38 -0.02 1.57 16 31 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.04 1.50 7.27 -2.38 -0.02 1.49 16 33 H 0.12 3.96 7.27 -2.91 -0.02 3.94 16 34 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 35 H 0.40 11.81 8.84 -92.71 -0.82 10.99 16 36 H 0.39 15.42 7.06 -92.71 -0.65 14.77 16 37 H 0.29 14.90 8.30 -92.71 -0.77 14.13 16 38 H 0.09 4.74 4.32 -2.92 -0.01 4.73 16 39 H 0.05 1.60 6.15 -2.38 -0.01 1.58 16 40 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -62.20 310.56 1.19 -61.01 By element: Atomic # 1 Polarization: 36.52 SS G_CDS: -0.50 Total: 36.01 kcal Atomic # 6 Polarization: -44.81 SS G_CDS: 3.69 Total: -41.12 kcal Atomic # 7 Polarization: -100.79 SS G_CDS: -3.68 Total: -104.47 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 1.68 Total: 48.57 kcal Total: -62.20 1.19 -61.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127528338.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.885 kcal (2) G-P(sol) polarization free energy of solvation -62.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds