Wall clock time and date at job start Mon Mar 30 2020 07:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47149 * 2 1 4 4 H 1.09004 * 110.64339 * 303.30060 * 3 2 1 5 5 C 1.54590 * 110.72621 * 66.45107 * 3 2 1 6 6 C 1.54000 * 105.13864 * 140.49153 * 5 3 2 7 7 N 1.47893 * 107.05823 * 1.23261 * 6 5 3 8 8 C 1.39857 * 110.99719 * 214.15202 * 7 6 5 9 9 C 1.39604 * 119.83960 * 239.89260 * 8 7 6 10 10 C 1.38057 * 120.54857 * 179.97438 * 9 8 7 11 11 C 1.38745 * 120.22176 * 0.02562 * 10 9 8 12 12 N 1.38856 * 120.16201 * 180.02562 * 11 10 9 13 13 C 1.41556 * 119.67031 * 359.97438 * 11 10 9 14 14 C 1.41028 * 120.26522 * 180.27187 * 13 11 10 15 15 H 1.08000 * 120.00124 * 333.36725 * 14 13 11 16 16 C 1.39894 * 119.99827 * 153.36221 * 14 13 11 17 17 N 1.30897 * 119.99902 * 344.03315 * 16 14 13 18 18 Si 1.86800 * 119.99683 * 164.03756 * 16 14 13 19 19 H 1.48501 * 109.46971 * 60.00291 * 18 16 14 20 20 H 1.48502 * 109.47019 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47283 * 299.99851 * 18 16 14 22 22 C 1.38007 * 119.84023 * 59.87730 * 8 7 6 23 23 C 1.48535 * 105.81906 * 334.66475 * 7 6 5 24 24 H 1.08997 * 109.47277 * 300.00206 * 1 2 3 25 25 H 1.09009 * 109.47229 * 60.00047 * 1 2 3 26 26 H 1.09001 * 109.47332 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46876 * 240.00532 * 2 1 3 28 28 H 1.08992 * 109.47299 * 120.00079 * 2 1 3 29 29 H 1.09004 * 110.30405 * 21.58317 * 5 3 2 30 30 H 1.08991 * 110.31843 * 259.41558 * 5 3 2 31 31 H 1.09003 * 109.91631 * 241.87516 * 6 5 3 32 32 H 1.09001 * 109.90915 * 120.58755 * 6 5 3 33 33 H 1.07993 * 119.72201 * 359.96158 * 9 8 7 34 34 H 1.07998 * 119.88949 * 179.97438 * 10 9 8 35 35 H 0.97008 * 120.00006 * 185.30459 * 12 11 10 36 36 H 0.97002 * 120.00229 * 5.29915 * 12 11 10 37 37 H 0.97005 * 119.99598 * 175.01281 * 17 16 14 38 38 H 1.07999 * 120.11260 * 0.03996 * 22 8 7 39 39 H 1.09005 * 110.66630 * 157.64451 * 23 7 6 40 40 H 1.08998 * 110.66719 * 280.77282 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6401 1.9915 -0.8526 5 6 1.6777 2.1509 1.3254 6 6 2.9113 3.0034 1.6760 7 7 3.8967 2.8077 0.5907 8 6 5.2035 2.8439 1.0876 9 6 6.0996 3.8048 0.6160 10 6 7.3928 3.8543 1.0967 11 6 7.8163 2.9460 2.0563 12 7 9.1171 2.9972 2.5394 13 6 6.9154 1.9677 2.5412 14 6 7.3309 1.0421 3.5206 15 1 8.3736 0.7728 3.6014 16 6 6.3923 0.4727 4.3877 17 7 5.2049 1.0098 4.5111 18 14 6.8335 -1.0540 5.3696 19 1 7.9978 -0.7611 6.2435 20 1 5.6750 -1.4556 6.2074 21 1 7.1784 -2.1586 4.4389 22 6 5.6007 1.9298 2.0422 23 6 3.5888 1.4805 -0.0011 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 1.4910 1.4158 2.1084 30 1 0.8042 2.7880 1.1876 31 1 3.3336 2.6730 2.6251 32 1 2.6305 4.0549 1.7376 33 1 5.7786 4.5153 -0.1314 34 1 8.0773 4.6018 0.7241 35 1 9.4342 2.3152 3.1521 36 1 9.7088 3.7149 2.2642 37 1 4.5302 0.5751 5.0559 38 1 4.9048 1.1876 2.4044 39 1 3.9746 1.4142 -1.0185 40 1 3.9938 0.6800 0.6179 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127528576.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:17 Heat of formation + Delta-G solvation = 13.307624 kcal Electronic energy + Delta-G solvation = -19812.390197 eV Core-core repulsion = 17011.749772 eV Total energy + Delta-G solvation = -2800.640426 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.17242 -37.29347 -34.45926 -33.54281 -32.24828 -29.48843 -29.47588 -28.10225 -25.96177 -24.94975 -22.70248 -21.70379 -20.86351 -19.60325 -19.11234 -17.13382 -16.07218 -15.69035 -15.34320 -15.11567 -14.66867 -13.88753 -13.57143 -13.19446 -12.96219 -12.77611 -12.52977 -12.46349 -12.03683 -11.68920 -11.50070 -11.46825 -11.23172 -11.07570 -10.94972 -10.77890 -10.49195 -10.34597 -10.21899 -10.09028 -9.89397 -9.61891 -9.09879 -8.93538 -7.57671 -7.33511 -6.68807 -6.18499 -4.12781 2.85471 3.07562 3.09745 3.11956 3.26027 4.00266 4.67836 4.77625 4.99202 5.13800 5.23800 5.29984 5.47960 5.59267 5.63872 5.71376 5.90327 5.99299 6.10291 6.13299 6.22128 6.28236 6.33813 6.37604 6.50490 6.58883 6.61670 6.68313 6.78659 7.03666 7.19027 7.22237 7.37226 7.62566 7.66941 7.75380 7.94412 8.25960 8.38708 8.68056 8.81127 8.87048 9.10429 9.19227 10.33180 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.015887 B = 0.007632 C = 0.005584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.992341 B = 3667.934686 C = 5013.177551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.091 4.091 4 H 0.075 0.925 5 C -0.122 4.122 6 C 0.036 3.964 7 N -0.475 5.475 8 C 0.035 3.965 9 C -0.155 4.155 10 C -0.184 4.184 11 C 0.123 3.877 12 N -0.884 5.884 13 C 0.065 3.935 14 C -0.466 4.466 15 H 0.069 0.931 16 C 0.077 3.923 17 N -0.806 5.806 18 Si 0.899 3.101 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.267 1.267 22 C -0.155 4.155 23 C 0.046 3.954 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.391 0.609 36 H 0.377 0.623 37 H 0.276 0.724 38 H 0.119 0.881 39 H 0.070 0.930 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.074 -1.071 -4.614 6.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.110 4.110 4 H 0.094 0.906 5 C -0.160 4.160 6 C -0.091 4.091 7 N -0.196 5.196 8 C -0.060 4.060 9 C -0.176 4.176 10 C -0.209 4.209 11 C 0.022 3.978 12 N -0.425 5.425 13 C 0.060 3.940 14 C -0.497 4.497 15 H 0.087 0.913 16 C -0.138 4.138 17 N -0.434 5.434 18 Si 0.724 3.276 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.192 1.192 22 C -0.178 4.178 23 C -0.081 4.081 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.219 0.781 36 H 0.202 0.798 37 H 0.087 0.913 38 H 0.137 0.863 39 H 0.089 0.911 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.394 -0.647 -4.826 7.266 hybrid contribution 0.596 -1.257 1.330 1.925 sum -4.798 -1.904 -3.495 6.234 Atomic orbital electron populations 1.21759 0.96128 1.01043 1.01707 1.21524 0.95529 0.96363 1.01985 1.22102 0.95700 0.95237 0.98007 0.90629 1.22450 0.97918 0.98663 0.96992 1.22942 0.91685 0.99350 0.95119 1.62349 1.01627 1.28055 1.27556 1.18513 0.89258 0.99082 0.99154 1.19947 0.92799 1.01104 1.03762 1.19931 0.96566 1.02143 1.02214 1.18060 0.86231 0.96426 0.97093 1.41933 1.11752 1.32868 1.55991 1.17096 0.91241 0.92210 0.93485 1.19047 0.94896 1.22537 1.13255 0.91319 1.25676 0.94943 0.97143 0.95995 1.69826 1.04714 1.35151 1.33675 0.86531 0.78796 0.82514 0.79764 1.19321 1.20577 1.19222 1.21370 0.97775 1.00552 0.98096 1.23269 0.93759 0.91353 0.99763 0.92664 0.93003 0.93219 0.92141 0.91892 0.91771 0.92062 0.91594 0.91712 0.88885 0.89252 0.78081 0.79763 0.91346 0.86285 0.91109 0.93103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.76 37.16 0.36 -1.28 16 2 C -0.12 -1.51 5.35 -26.73 -0.14 -1.66 16 3 C -0.09 -1.37 3.08 -88.76 -0.27 -1.64 16 4 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 5 C -0.12 -1.92 5.66 -25.37 -0.14 -2.06 16 6 C 0.04 0.70 6.50 -2.76 -0.02 0.68 16 7 N -0.48 -9.83 5.28 -167.17 -0.88 -10.71 16 8 C 0.03 0.82 4.86 -83.77 -0.41 0.41 16 9 C -0.16 -3.59 9.96 -39.14 -0.39 -3.98 16 10 C -0.18 -4.18 9.87 -39.46 -0.39 -4.56 16 11 C 0.12 2.94 6.79 -83.23 -0.56 2.38 16 12 N -0.88 -17.65 8.97 32.75 0.29 -17.35 16 13 C 0.06 1.70 5.57 -106.66 -0.59 1.11 16 14 C -0.47 -12.09 8.51 -37.91 -0.32 -12.41 16 15 H 0.07 1.69 6.65 -52.49 -0.35 1.34 16 16 C 0.08 1.94 5.16 -17.33 -0.09 1.85 16 17 N -0.81 -20.81 10.97 55.55 0.61 -20.20 16 18 Si 0.90 18.89 29.59 -169.99 -5.03 13.85 16 19 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 20 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 21 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 22 C -0.16 -3.97 6.49 -38.75 -0.25 -4.23 16 23 C 0.05 0.84 5.85 -1.90 -0.01 0.83 16 24 H 0.05 0.61 7.50 -51.93 -0.39 0.22 16 25 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.89 8.07 -51.93 -0.42 0.47 16 29 H 0.06 1.01 7.80 -51.93 -0.41 0.60 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.48 6.67 -51.93 -0.35 1.13 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.09 2.00 8.06 -52.49 -0.42 1.58 16 34 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 35 H 0.39 7.64 7.05 -40.82 -0.29 7.35 16 36 H 0.38 6.32 8.84 -40.82 -0.36 5.95 16 37 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 38 H 0.12 3.18 5.19 -52.49 -0.27 2.90 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.05 1.03 6.55 -51.93 -0.34 0.69 16 LS Contribution 315.26 15.07 4.75 4.75 Total: -1.00 -27.32 315.26 -9.60 -36.92 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: -6.11 Total: 17.29 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: -3.24 Total: -24.56 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: 0.02 Total: -48.26 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.32 -9.60 -36.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127528576.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.232 kcal (2) G-P(sol) polarization free energy of solvation -27.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds