Wall clock time and date at job start Mon Mar 30 2020 07:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47149 * 2 1 4 4 H 1.09004 * 110.64339 * 303.30060 * 3 2 1 5 5 C 1.54590 * 110.72621 * 66.45107 * 3 2 1 6 6 C 1.54000 * 105.13864 * 140.49153 * 5 3 2 7 7 N 1.47893 * 107.05823 * 1.23261 * 6 5 3 8 8 C 1.39857 * 110.99719 * 214.15202 * 7 6 5 9 9 C 1.39604 * 119.83960 * 239.89260 * 8 7 6 10 10 C 1.38057 * 120.54857 * 179.97438 * 9 8 7 11 11 C 1.38745 * 120.22176 * 0.02562 * 10 9 8 12 12 N 1.38856 * 120.16201 * 180.02562 * 11 10 9 13 13 C 1.41556 * 119.67031 * 359.97438 * 11 10 9 14 14 C 1.41028 * 120.26522 * 180.27187 * 13 11 10 15 15 H 1.08000 * 120.00124 * 333.36725 * 14 13 11 16 16 C 1.39894 * 119.99827 * 153.36221 * 14 13 11 17 17 N 1.30897 * 119.99902 * 344.03315 * 16 14 13 18 18 Si 1.86800 * 119.99683 * 164.03756 * 16 14 13 19 19 H 1.48501 * 109.46971 * 60.00291 * 18 16 14 20 20 H 1.48502 * 109.47019 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47283 * 299.99851 * 18 16 14 22 22 C 1.38007 * 119.84023 * 59.87730 * 8 7 6 23 23 C 1.48535 * 105.81906 * 334.66475 * 7 6 5 24 24 H 1.08997 * 109.47277 * 300.00206 * 1 2 3 25 25 H 1.09009 * 109.47229 * 60.00047 * 1 2 3 26 26 H 1.09001 * 109.47332 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46876 * 240.00532 * 2 1 3 28 28 H 1.08992 * 109.47299 * 120.00079 * 2 1 3 29 29 H 1.09004 * 110.30405 * 21.58317 * 5 3 2 30 30 H 1.08991 * 110.31843 * 259.41558 * 5 3 2 31 31 H 1.09003 * 109.91631 * 241.87516 * 6 5 3 32 32 H 1.09001 * 109.90915 * 120.58755 * 6 5 3 33 33 H 1.07993 * 119.72201 * 359.96158 * 9 8 7 34 34 H 1.07998 * 119.88949 * 179.97438 * 10 9 8 35 35 H 0.97008 * 120.00006 * 185.30459 * 12 11 10 36 36 H 0.97002 * 120.00229 * 5.29915 * 12 11 10 37 37 H 0.97005 * 119.99598 * 175.01281 * 17 16 14 38 38 H 1.07999 * 120.11260 * 0.03996 * 22 8 7 39 39 H 1.09005 * 110.66630 * 157.64451 * 23 7 6 40 40 H 1.08998 * 110.66719 * 280.77282 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6401 1.9915 -0.8526 5 6 1.6777 2.1509 1.3254 6 6 2.9113 3.0034 1.6760 7 7 3.8967 2.8077 0.5907 8 6 5.2035 2.8439 1.0876 9 6 6.0996 3.8048 0.6160 10 6 7.3928 3.8543 1.0967 11 6 7.8163 2.9460 2.0563 12 7 9.1171 2.9972 2.5394 13 6 6.9154 1.9677 2.5412 14 6 7.3309 1.0421 3.5206 15 1 8.3736 0.7728 3.6014 16 6 6.3923 0.4727 4.3877 17 7 5.2049 1.0098 4.5111 18 14 6.8335 -1.0540 5.3696 19 1 7.9978 -0.7611 6.2435 20 1 5.6750 -1.4556 6.2074 21 1 7.1784 -2.1586 4.4389 22 6 5.6007 1.9298 2.0422 23 6 3.5888 1.4805 -0.0011 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 1.4910 1.4158 2.1084 30 1 0.8042 2.7880 1.1876 31 1 3.3336 2.6730 2.6251 32 1 2.6305 4.0549 1.7376 33 1 5.7786 4.5153 -0.1314 34 1 8.0773 4.6018 0.7241 35 1 9.4342 2.3152 3.1521 36 1 9.7088 3.7149 2.2642 37 1 4.5302 0.5751 5.0559 38 1 4.9048 1.1876 2.4044 39 1 3.9746 1.4142 -1.0185 40 1 3.9938 0.6800 0.6179 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127528576.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:17 Heat of formation + Delta-G solvation = -2.366454 kcal Electronic energy + Delta-G solvation = -19813.069876 eV Core-core repulsion = 17011.749772 eV Total energy + Delta-G solvation = -2801.320105 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.77408 -38.96106 -35.90370 -35.40591 -33.75829 -31.37948 -30.92077 -29.47551 -27.70815 -26.74604 -23.86803 -23.40342 -22.60868 -21.06357 -20.66132 -18.97540 -17.79802 -17.39302 -16.85681 -16.68888 -16.38819 -15.19103 -14.96129 -14.65799 -14.58000 -14.36329 -14.13346 -14.05244 -13.50107 -13.31806 -13.15806 -12.92435 -12.79508 -12.66039 -12.36681 -12.21445 -12.08137 -11.82974 -11.55326 -11.46645 -11.37320 -11.33347 -10.96719 -10.66435 -9.29486 -9.22856 -8.55910 -7.97738 -6.06536 1.04977 1.21849 1.37121 1.46040 1.52536 2.23584 2.81093 3.27164 3.61216 3.68393 3.79429 3.92731 4.04065 4.35084 4.42479 4.55251 4.56726 4.60637 4.78052 4.81680 4.83559 4.97265 5.02092 5.05182 5.09837 5.17255 5.21662 5.25884 5.31124 5.40970 5.43996 5.52285 5.54170 5.84156 5.95378 6.05267 6.07168 6.38003 6.51684 6.89686 6.93583 7.00892 7.31218 7.52624 8.46806 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.015887 B = 0.007632 C = 0.005584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.992341 B = 3667.934686 C = 5013.177551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C -0.079 4.079 4 H 0.093 0.907 5 C -0.113 4.113 6 C 0.036 3.964 7 N -0.476 5.476 8 C 0.026 3.974 9 C -0.160 4.160 10 C -0.188 4.188 11 C 0.115 3.885 12 N -0.872 5.872 13 C 0.027 3.973 14 C -0.493 4.493 15 H 0.073 0.927 16 C 0.034 3.966 17 N -0.837 5.837 18 Si 0.968 3.032 19 H -0.260 1.260 20 H -0.276 1.276 21 H -0.266 1.266 22 C -0.168 4.168 23 C 0.043 3.957 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.026 0.974 32 H 0.071 0.929 33 H 0.110 0.890 34 H 0.120 0.880 35 H 0.393 0.607 36 H 0.394 0.606 37 H 0.278 0.722 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.627 -1.059 -5.460 7.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 C -0.098 4.098 4 H 0.112 0.888 5 C -0.151 4.151 6 C -0.092 4.092 7 N -0.196 5.196 8 C -0.069 4.069 9 C -0.181 4.181 10 C -0.212 4.212 11 C 0.012 3.988 12 N -0.414 5.414 13 C 0.022 3.978 14 C -0.524 4.524 15 H 0.091 0.909 16 C -0.178 4.178 17 N -0.465 5.465 18 Si 0.791 3.209 19 H -0.184 1.184 20 H -0.201 1.201 21 H -0.191 1.191 22 C -0.191 4.191 23 C -0.084 4.084 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.044 0.956 32 H 0.090 0.910 33 H 0.129 0.871 34 H 0.138 0.862 35 H 0.221 0.779 36 H 0.223 0.777 37 H 0.089 0.911 38 H 0.116 0.884 39 H 0.095 0.905 40 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -5.918 -0.617 -5.677 8.224 hybrid contribution 0.801 -1.171 1.534 2.089 sum -5.118 -1.789 -4.143 6.823 Atomic orbital electron populations 1.21723 0.94032 1.02088 1.02313 1.21497 0.97266 0.94747 1.01615 1.22084 0.92808 0.96771 0.98110 0.88831 1.22411 0.97035 0.98439 0.97229 1.22927 0.92788 1.00339 0.93102 1.62433 1.00585 1.29147 1.27475 1.18728 0.90769 0.98705 0.98737 1.20273 0.93032 1.00946 1.03808 1.20255 0.96984 1.02367 1.01637 1.18227 0.87281 0.96039 0.97218 1.41821 1.10685 1.33425 1.55518 1.17499 0.92208 0.93583 0.94532 1.19306 0.95458 1.23692 1.13977 0.90857 1.26484 0.94720 0.99745 0.96823 1.69919 1.05643 1.36404 1.34523 0.85461 0.78705 0.78527 0.78242 1.18445 1.20071 1.19067 1.21285 0.97606 1.01032 0.99142 1.23322 0.96556 0.89432 0.99106 0.92745 0.91657 0.92062 0.91220 0.93686 0.92200 0.89246 0.95559 0.91046 0.87148 0.86248 0.77856 0.77725 0.91139 0.88431 0.90484 0.95926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.76 71.98 0.70 -2.10 16 2 C -0.11 -2.80 5.35 30.59 0.16 -2.63 16 3 C -0.08 -2.25 3.08 -9.59 -0.03 -2.28 16 4 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 5 C -0.11 -3.44 5.66 31.47 0.18 -3.26 16 6 C 0.04 1.40 6.50 86.45 0.56 1.96 16 7 N -0.48 -19.83 5.28 -682.79 -3.60 -23.43 16 8 C 0.03 1.24 4.86 38.14 0.19 1.43 16 9 C -0.16 -7.31 9.96 22.56 0.22 -7.08 16 10 C -0.19 -8.34 9.87 22.35 0.22 -8.12 16 11 C 0.12 5.49 6.79 38.97 0.26 5.76 16 12 N -0.87 -34.09 8.97 -50.31 -0.45 -34.54 16 13 C 0.03 1.46 5.57 -21.18 -0.12 1.34 16 14 C -0.49 -26.24 8.51 23.36 0.20 -26.04 16 15 H 0.07 3.68 6.65 -2.91 -0.02 3.66 16 16 C 0.03 1.76 5.16 85.23 0.44 2.20 16 17 N -0.84 -44.94 10.97 21.82 0.24 -44.70 16 18 Si 0.97 39.38 29.59 68.60 2.03 41.41 16 19 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 20 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 21 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 22 C -0.17 -8.96 6.49 22.81 0.15 -8.82 16 23 C 0.04 1.59 5.85 86.65 0.51 2.09 16 24 H 0.05 1.07 7.50 -2.39 -0.02 1.05 16 25 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 26 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 28 H 0.04 1.27 8.07 -2.39 -0.02 1.25 16 29 H 0.06 1.87 7.80 -2.39 -0.02 1.85 16 30 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.03 1.23 6.67 -2.39 -0.02 1.22 16 32 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 34 H 0.12 4.48 8.06 -2.91 -0.02 4.45 16 35 H 0.39 15.18 7.05 -92.70 -0.65 14.53 16 36 H 0.39 12.53 8.84 -92.71 -0.82 11.71 16 37 H 0.28 13.88 8.30 -92.70 -0.77 13.11 16 38 H 0.10 5.55 5.19 -2.91 -0.02 5.54 16 39 H 0.08 2.71 8.14 -2.38 -0.02 2.69 16 40 H 0.02 0.96 6.55 -2.39 -0.02 0.94 16 Total: -1.00 -60.33 315.26 1.44 -58.90 By element: Atomic # 1 Polarization: 48.35 SS G_CDS: -0.43 Total: 47.92 kcal Atomic # 6 Polarization: -49.21 SS G_CDS: 3.65 Total: -45.56 kcal Atomic # 7 Polarization: -98.86 SS G_CDS: -3.82 Total: -102.67 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 2.03 Total: 41.41 kcal Total: -60.33 1.44 -58.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127528576.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.532 kcal (2) G-P(sol) polarization free energy of solvation -60.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds