Wall clock time and date at job start Mon Mar 30 2020 06:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86797 * 120.00062 * 2 1 4 4 H 1.48497 * 109.47049 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47403 * 299.99881 * 3 2 1 6 6 H 1.48503 * 109.47061 * 60.00116 * 3 2 1 7 7 C 1.39887 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00232 * 163.88791 * 7 2 1 9 9 C 1.41026 * 119.99813 * 343.88904 * 7 2 1 10 10 C 1.40663 * 120.27137 * 333.53198 * 9 7 2 11 11 C 1.38010 * 119.77183 * 179.73651 * 10 9 7 12 12 N 1.39852 * 119.83808 * 180.23174 * 11 10 9 13 13 C 1.46500 * 119.99933 * 180.30765 * 12 11 10 14 14 C 1.52999 * 109.47258 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.46808 * 179.97438 * 14 13 12 16 16 C 1.52999 * 109.46808 * 179.97438 * 15 14 13 17 17 C 1.53006 * 117.50021 * 243.74859 * 16 15 14 18 18 C 1.53001 * 117.50023 * 175.08782 * 16 15 14 19 19 C 1.39591 * 120.31780 * 0.54803 * 11 10 9 20 20 C 1.38064 * 120.55511 * 359.71041 * 19 11 10 21 21 C 1.38738 * 120.21307 * 0.02562 * 20 19 11 22 22 N 1.38872 * 120.15556 * 179.97438 * 21 20 19 23 23 H 0.97006 * 120.00048 * 0.02562 * 1 2 3 24 24 H 1.08007 * 120.11228 * 359.97438 * 10 9 7 25 25 H 0.97002 * 120.00295 * 0.31554 * 12 11 10 26 26 H 1.08997 * 109.47331 * 300.00691 * 13 12 11 27 27 H 1.09007 * 109.47209 * 60.00513 * 13 12 11 28 28 H 1.08998 * 109.47385 * 299.99649 * 14 13 12 29 29 H 1.08997 * 109.47174 * 60.00367 * 14 13 12 30 30 H 1.08997 * 109.47578 * 300.00261 * 15 14 13 31 31 H 1.09005 * 109.46917 * 60.00515 * 15 14 13 32 32 H 1.09003 * 115.55054 * 29.41845 * 16 15 14 33 33 H 1.09001 * 117.49638 * 359.97438 * 17 16 15 34 34 H 1.08998 * 117.49662 * 145.01855 * 17 16 15 35 35 H 1.08999 * 117.50152 * 214.98007 * 18 16 15 36 36 H 1.08999 * 117.49871 * 0.02562 * 18 16 15 37 37 H 1.07999 * 119.72397 * 179.68911 * 19 11 10 38 38 H 1.07995 * 119.89257 * 180.02562 * 20 19 11 39 39 H 0.96998 * 119.99379 * 180.02562 * 22 21 20 40 40 H 0.96995 * 120.00248 * 0.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.7030 1.3463 0.0006 5 1 1.8844 2.3964 -1.2125 6 1 1.8843 2.3964 1.2125 7 6 2.0084 -1.2115 0.0005 8 1 3.0566 -1.2300 -0.2590 9 6 1.3448 -2.4086 0.3400 10 6 0.2179 -2.3806 1.1815 11 6 -0.4269 -3.5578 1.5026 12 7 -1.5503 -3.5311 2.3352 13 6 -2.2335 -4.7792 2.6838 14 6 -3.4213 -4.4723 3.5981 15 6 -4.1352 -5.7759 3.9616 16 6 -5.3226 -5.4691 4.8764 17 6 -5.2841 -6.0345 6.2976 18 6 -6.2377 -6.6335 5.2607 19 6 0.0406 -4.7756 1.0057 20 6 1.1486 -4.8191 0.1832 21 6 1.8108 -3.6489 -0.1585 22 7 2.9255 -3.6941 -0.9856 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1437 -1.4407 1.5718 25 1 -1.8772 -2.6861 2.6817 26 1 -2.5905 -5.2641 1.7752 27 1 -1.5388 -5.4418 3.2002 28 1 -3.0647 -3.9874 4.5067 29 1 -4.1159 -3.8101 3.0814 30 1 -4.4919 -6.2605 3.0528 31 1 -3.4407 -6.4385 4.4782 32 1 -5.7839 -4.4915 4.7359 33 1 -4.4130 -6.6254 6.5807 34 1 -5.7204 -5.4291 7.0920 35 1 -7.3010 -6.4219 5.3735 36 1 -5.9935 -7.6182 4.8622 37 1 -0.4684 -5.6915 1.2673 38 1 1.5009 -5.7672 -0.1955 39 1 3.3869 -2.8745 -1.2227 40 1 3.2426 -4.5451 -1.3261 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127556888.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:41 Heat of formation + Delta-G solvation = 29.729699 kcal Electronic energy + Delta-G solvation = -18461.447960 eV Core-core repulsion = 15661.519649 eV Total energy + Delta-G solvation = -2799.928311 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.13898 -37.71689 -35.64963 -33.43236 -33.05960 -30.82748 -29.37641 -27.18749 -25.03118 -24.45870 -22.57012 -21.90778 -20.63772 -20.53918 -19.57418 -17.03503 -16.04313 -15.83730 -15.42432 -15.13415 -14.87845 -14.70435 -14.43012 -13.87410 -13.00731 -12.84545 -12.40021 -12.06068 -11.92434 -11.80224 -11.69035 -11.66247 -11.32451 -11.11538 -10.98541 -10.92386 -10.88338 -10.34282 -10.30995 -9.98995 -9.81162 -9.65474 -9.28028 -9.03096 -7.71859 -7.18735 -6.58783 -5.49585 -4.03659 2.92177 3.15459 3.19894 3.33175 3.51666 3.63307 4.05711 4.31666 4.66490 4.77501 4.81950 4.85671 5.09590 5.24414 5.37928 5.44989 5.45945 5.63591 5.78277 5.82598 5.86589 5.92637 5.93297 5.97946 6.17613 6.39956 6.41204 6.42984 6.67194 7.15670 7.18984 7.35034 7.52647 7.74117 7.91763 8.03514 8.16063 8.49436 8.79403 8.94155 8.98000 9.03495 9.29096 9.37559 10.40559 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024559 B = 0.003833 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.854826 B = 7302.543304 C = 8275.690524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.076 3.924 3 Si 0.901 3.099 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.464 4.464 8 H 0.071 0.929 9 C 0.095 3.905 10 C -0.201 4.201 11 C 0.177 3.823 12 N -0.764 5.764 13 C 0.139 3.861 14 C -0.126 4.126 15 C -0.085 4.085 16 C -0.149 4.149 17 C -0.183 4.183 18 C -0.185 4.185 19 C -0.255 4.255 20 C -0.153 4.153 21 C 0.084 3.916 22 N -0.889 5.889 23 H 0.274 0.726 24 H 0.116 0.884 25 H 0.387 0.613 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.388 0.612 40 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.430 -7.200 7.164 12.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.200 1.200 7 C -0.495 4.495 8 H 0.089 0.911 9 C 0.090 3.910 10 C -0.225 4.225 11 C 0.078 3.922 12 N -0.399 5.399 13 C 0.013 3.987 14 C -0.164 4.164 15 C -0.123 4.123 16 C -0.167 4.167 17 C -0.220 4.220 18 C -0.222 4.222 19 C -0.279 4.279 20 C -0.177 4.177 21 C -0.016 4.016 22 N -0.432 5.432 23 H 0.084 0.916 24 H 0.134 0.866 25 H 0.220 0.780 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.122 0.878 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.216 0.784 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -7.731 -7.216 7.206 12.798 hybrid contribution 0.390 1.060 -0.134 1.138 sum -7.341 -6.156 7.073 11.909 Atomic orbital electron populations 1.69897 1.07241 1.28213 1.37402 1.25748 0.94659 1.00658 0.92889 0.86391 0.80878 0.81833 0.78257 1.18752 1.20371 1.20045 1.19150 0.96883 0.91124 1.42385 0.91089 1.16975 0.92682 0.90277 0.91084 1.20481 1.01499 0.95107 1.05432 1.17524 0.87761 0.94145 0.92753 1.44331 1.32183 1.06500 1.56919 1.20976 0.92488 0.88362 0.96824 1.21734 0.97293 0.97561 0.99827 1.21098 0.95000 0.97601 0.98639 1.22374 0.99557 0.98075 0.96736 1.23047 1.02134 1.04189 0.92607 1.22973 0.96751 0.98185 1.04271 1.19612 1.02984 0.94439 1.10854 1.19707 0.99045 0.94623 1.04351 1.17864 0.92125 0.93920 0.97739 1.41806 1.33712 1.09104 1.58561 0.91555 0.86574 0.78009 0.93748 0.93798 0.91617 0.91614 0.91404 0.91705 0.87847 0.88802 0.89099 0.89067 0.88861 0.89749 0.89801 0.78352 0.80134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.20 10.98 55.55 0.61 -20.59 16 2 C 0.08 1.95 5.16 -17.33 -0.09 1.86 16 3 Si 0.90 19.14 29.59 -169.99 -5.03 14.11 16 4 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 7 C -0.46 -12.35 8.48 -37.91 -0.32 -12.67 16 8 H 0.07 1.80 6.70 -52.49 -0.35 1.45 16 9 C 0.10 2.57 5.57 -106.66 -0.59 1.97 16 10 C -0.20 -5.32 8.49 -38.75 -0.33 -5.65 16 11 C 0.18 4.23 6.64 -83.78 -0.56 3.67 16 12 N -0.76 -15.09 5.74 -58.64 -0.34 -15.43 16 13 C 0.14 2.22 4.90 -4.04 -0.02 2.20 16 14 C -0.13 -1.57 5.29 -26.73 -0.14 -1.71 16 15 C -0.09 -0.90 5.50 -26.73 -0.15 -1.05 16 16 C -0.15 -1.44 5.73 -90.62 -0.52 -1.96 16 17 C -0.18 -1.61 10.18 -26.69 -0.27 -1.88 16 18 C -0.18 -1.58 10.25 -26.69 -0.27 -1.85 16 19 C -0.25 -5.96 9.31 -39.14 -0.36 -6.32 16 20 C -0.15 -3.59 9.86 -39.46 -0.39 -3.98 16 21 C 0.08 2.09 6.79 -83.22 -0.56 1.52 16 22 N -0.89 -18.57 8.98 32.75 0.29 -18.28 16 23 H 0.27 6.65 8.30 -40.82 -0.34 6.31 16 24 H 0.12 3.19 6.24 -52.48 -0.33 2.86 16 25 H 0.39 7.28 8.48 -40.82 -0.35 6.94 16 26 H 0.04 0.73 7.94 -51.93 -0.41 0.32 16 27 H 0.04 0.71 7.94 -51.92 -0.41 0.30 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.67 7.87 -51.93 -0.41 0.26 16 32 H 0.10 0.99 8.08 -51.93 -0.42 0.57 16 33 H 0.09 0.81 8.03 -51.93 -0.42 0.39 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 1.79 6.69 -52.49 -0.35 1.44 16 38 H 0.08 1.75 8.06 -52.49 -0.42 1.33 16 39 H 0.39 7.95 7.05 -40.82 -0.29 7.66 16 40 H 0.37 6.61 8.83 -40.82 -0.36 6.25 16 LS Contribution 327.83 15.07 4.94 4.94 Total: -1.00 -28.68 327.83 -10.29 -38.97 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: -6.19 Total: 22.13 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: -4.58 Total: -25.85 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: 0.57 Total: -54.30 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.68 -10.29 -38.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127556888.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.705 kcal (2) G-P(sol) polarization free energy of solvation -28.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds