Wall clock time and date at job start Mon Mar 30 2020 06:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86797 * 120.00062 * 2 1 4 4 H 1.48497 * 109.47049 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47403 * 299.99881 * 3 2 1 6 6 H 1.48503 * 109.47061 * 60.00116 * 3 2 1 7 7 C 1.39887 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00232 * 163.88791 * 7 2 1 9 9 C 1.41026 * 119.99813 * 343.88904 * 7 2 1 10 10 C 1.40663 * 120.27137 * 333.53198 * 9 7 2 11 11 C 1.38010 * 119.77183 * 179.73651 * 10 9 7 12 12 N 1.39852 * 119.83808 * 180.23174 * 11 10 9 13 13 C 1.46500 * 119.99933 * 180.30765 * 12 11 10 14 14 C 1.52999 * 109.47258 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.46808 * 179.97438 * 14 13 12 16 16 C 1.52999 * 109.46808 * 179.97438 * 15 14 13 17 17 C 1.53006 * 117.50021 * 243.74859 * 16 15 14 18 18 C 1.53001 * 117.50023 * 175.08782 * 16 15 14 19 19 C 1.39591 * 120.31780 * 0.54803 * 11 10 9 20 20 C 1.38064 * 120.55511 * 359.71041 * 19 11 10 21 21 C 1.38738 * 120.21307 * 0.02562 * 20 19 11 22 22 N 1.38872 * 120.15556 * 179.97438 * 21 20 19 23 23 H 0.97006 * 120.00048 * 0.02562 * 1 2 3 24 24 H 1.08007 * 120.11228 * 359.97438 * 10 9 7 25 25 H 0.97002 * 120.00295 * 0.31554 * 12 11 10 26 26 H 1.08997 * 109.47331 * 300.00691 * 13 12 11 27 27 H 1.09007 * 109.47209 * 60.00513 * 13 12 11 28 28 H 1.08998 * 109.47385 * 299.99649 * 14 13 12 29 29 H 1.08997 * 109.47174 * 60.00367 * 14 13 12 30 30 H 1.08997 * 109.47578 * 300.00261 * 15 14 13 31 31 H 1.09005 * 109.46917 * 60.00515 * 15 14 13 32 32 H 1.09003 * 115.55054 * 29.41845 * 16 15 14 33 33 H 1.09001 * 117.49638 * 359.97438 * 17 16 15 34 34 H 1.08998 * 117.49662 * 145.01855 * 17 16 15 35 35 H 1.08999 * 117.50152 * 214.98007 * 18 16 15 36 36 H 1.08999 * 117.49871 * 0.02562 * 18 16 15 37 37 H 1.07999 * 119.72397 * 179.68911 * 19 11 10 38 38 H 1.07995 * 119.89257 * 180.02562 * 20 19 11 39 39 H 0.96998 * 119.99379 * 180.02562 * 22 21 20 40 40 H 0.96995 * 120.00248 * 0.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.7030 1.3463 0.0006 5 1 1.8844 2.3964 -1.2125 6 1 1.8843 2.3964 1.2125 7 6 2.0084 -1.2115 0.0005 8 1 3.0566 -1.2300 -0.2590 9 6 1.3448 -2.4086 0.3400 10 6 0.2179 -2.3806 1.1815 11 6 -0.4269 -3.5578 1.5026 12 7 -1.5503 -3.5311 2.3352 13 6 -2.2335 -4.7792 2.6838 14 6 -3.4213 -4.4723 3.5981 15 6 -4.1352 -5.7759 3.9616 16 6 -5.3226 -5.4691 4.8764 17 6 -5.2841 -6.0345 6.2976 18 6 -6.2377 -6.6335 5.2607 19 6 0.0406 -4.7756 1.0057 20 6 1.1486 -4.8191 0.1832 21 6 1.8108 -3.6489 -0.1585 22 7 2.9255 -3.6941 -0.9856 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1437 -1.4407 1.5718 25 1 -1.8772 -2.6861 2.6817 26 1 -2.5905 -5.2641 1.7752 27 1 -1.5388 -5.4418 3.2002 28 1 -3.0647 -3.9874 4.5067 29 1 -4.1159 -3.8101 3.0814 30 1 -4.4919 -6.2605 3.0528 31 1 -3.4407 -6.4385 4.4782 32 1 -5.7839 -4.4915 4.7359 33 1 -4.4130 -6.6254 6.5807 34 1 -5.7204 -5.4291 7.0920 35 1 -7.3010 -6.4219 5.3735 36 1 -5.9935 -7.6182 4.8622 37 1 -0.4684 -5.6915 1.2673 38 1 1.5009 -5.7672 -0.1955 39 1 3.3869 -2.8745 -1.2227 40 1 3.2426 -4.5451 -1.3261 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127556888.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:41 Heat of formation + Delta-G solvation = 13.906981 kcal Electronic energy + Delta-G solvation = -18462.134085 eV Core-core repulsion = 15661.519649 eV Total energy + Delta-G solvation = -2800.614436 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.77272 -38.69775 -37.13591 -35.32865 -34.48000 -32.27853 -31.29759 -28.72670 -26.79087 -25.98491 -23.47711 -23.18012 -22.16602 -21.57128 -21.14893 -18.89458 -17.79721 -17.23964 -16.78946 -16.52181 -16.37278 -16.13915 -15.72524 -14.96726 -14.60040 -14.24995 -14.14154 -13.75308 -13.50567 -13.16751 -13.07565 -12.79454 -12.75135 -12.61478 -12.38288 -12.12576 -12.03610 -11.90669 -11.70177 -11.29374 -11.15721 -11.02783 -10.93296 -10.71923 -9.39992 -9.13439 -8.49528 -7.29413 -5.99970 1.11981 1.41730 1.50776 1.55348 1.65604 2.27902 2.87785 2.93041 3.02001 3.74329 3.78973 3.96438 4.03464 4.07377 4.19645 4.25015 4.42853 4.60066 4.70039 4.81148 4.82390 4.87401 4.90052 4.92060 5.08563 5.22860 5.24558 5.28283 5.34980 5.35660 5.43387 5.46946 5.68356 5.89712 6.06989 6.17167 6.29325 6.57633 6.98164 7.06678 7.13904 7.28118 7.48104 7.67683 8.51977 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024559 B = 0.003833 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.854826 B = 7302.543304 C = 8275.690524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.032 3.968 3 Si 0.975 3.025 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.492 4.492 8 H 0.074 0.926 9 C 0.060 3.940 10 C -0.226 4.226 11 C 0.171 3.829 12 N -0.762 5.762 13 C 0.138 3.862 14 C -0.114 4.114 15 C -0.079 4.079 16 C -0.162 4.162 17 C -0.183 4.183 18 C -0.179 4.179 19 C -0.259 4.259 20 C -0.158 4.158 21 C 0.069 3.931 22 N -0.879 5.879 23 H 0.279 0.721 24 H 0.096 0.904 25 H 0.389 0.611 26 H 0.042 0.958 27 H 0.045 0.955 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.390 0.610 40 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.668 -7.925 7.592 13.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.180 4.180 3 Si 0.798 3.202 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.523 4.523 8 H 0.092 0.908 9 C 0.055 3.945 10 C -0.251 4.251 11 C 0.070 3.930 12 N -0.396 5.396 13 C 0.014 3.986 14 C -0.152 4.152 15 C -0.117 4.117 16 C -0.180 4.180 17 C -0.220 4.220 18 C -0.216 4.216 19 C -0.283 4.283 20 C -0.182 4.182 21 C -0.033 4.033 22 N -0.423 5.423 23 H 0.089 0.911 24 H 0.114 0.886 25 H 0.222 0.778 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.121 0.879 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.124 0.876 38 H 0.129 0.871 39 H 0.218 0.782 40 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -7.976 -7.975 7.637 13.621 hybrid contribution 0.412 1.178 -0.250 1.273 sum -7.564 -6.797 7.387 12.569 Atomic orbital electron populations 1.69977 1.08723 1.29346 1.38109 1.26584 0.95423 1.03935 0.92081 0.85263 0.79497 0.77130 0.78339 1.18210 1.19688 1.19657 1.19403 0.97191 0.92025 1.43666 0.90781 1.17379 0.93532 0.91611 0.91978 1.20455 1.02608 0.95266 1.06755 1.17658 0.88611 0.93697 0.92988 1.44459 1.31198 1.08098 1.55878 1.21150 0.93387 0.86712 0.97385 1.21627 0.95920 0.98719 0.98941 1.21027 0.95277 0.96367 0.99041 1.22333 0.99730 0.98640 0.97288 1.23126 1.02376 1.04133 0.92404 1.23055 0.97160 0.97854 1.03547 1.19928 1.03036 0.94963 1.10400 1.20061 0.98807 0.95404 1.03957 1.18040 0.93230 0.93679 0.98341 1.41679 1.32662 1.10154 1.57806 0.91084 0.88578 0.77796 0.94013 0.93659 0.91505 0.91665 0.91227 0.91382 0.87945 0.88661 0.88388 0.88126 0.88432 0.87556 0.87052 0.78204 0.78188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.26 10.98 21.82 0.24 -45.02 16 2 C 0.03 1.68 5.16 85.23 0.44 2.12 16 3 Si 0.98 39.62 29.59 68.60 2.03 41.65 16 4 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 5 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 6 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.49 -26.67 8.48 23.35 0.20 -26.48 16 8 H 0.07 3.81 6.70 -2.91 -0.02 3.79 16 9 C 0.06 3.32 5.57 -21.18 -0.12 3.20 16 10 C -0.23 -12.33 8.49 22.81 0.19 -12.14 16 11 C 0.17 8.24 6.64 38.13 0.25 8.49 16 12 N -0.76 -30.07 5.74 -339.43 -1.95 -32.01 16 13 C 0.14 4.26 4.90 86.38 0.42 4.68 16 14 C -0.11 -2.70 5.29 30.60 0.16 -2.54 16 15 C -0.08 -1.54 5.50 30.60 0.17 -1.37 16 16 C -0.16 -2.84 5.73 -10.79 -0.06 -2.90 16 17 C -0.18 -2.88 10.18 30.62 0.31 -2.57 16 18 C -0.18 -2.69 10.25 30.62 0.31 -2.38 16 19 C -0.26 -11.87 9.31 22.56 0.21 -11.66 16 20 C -0.16 -7.24 9.86 22.35 0.22 -7.02 16 21 C 0.07 3.41 6.79 38.97 0.26 3.68 16 22 N -0.88 -36.05 8.98 -50.30 -0.45 -36.50 16 23 H 0.28 13.84 8.30 -92.70 -0.77 13.08 16 24 H 0.10 5.52 6.24 -2.91 -0.02 5.50 16 25 H 0.39 14.83 8.48 -92.71 -0.79 14.04 16 26 H 0.04 1.32 7.94 -2.39 -0.02 1.30 16 27 H 0.05 1.40 7.94 -2.38 -0.02 1.38 16 28 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.07 1.28 7.87 -2.38 -0.02 1.26 16 32 H 0.10 1.81 8.08 -2.39 -0.02 1.80 16 33 H 0.09 1.46 8.03 -2.39 -0.02 1.44 16 34 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.11 4.31 6.69 -2.91 -0.02 4.29 16 38 H 0.11 4.39 8.06 -2.91 -0.02 4.36 16 39 H 0.39 15.81 7.05 -92.71 -0.65 15.16 16 40 H 0.39 13.19 8.83 -92.71 -0.82 12.37 16 Total: -1.00 -61.68 327.83 1.65 -60.03 By element: Atomic # 1 Polarization: 59.94 SS G_CDS: -1.20 Total: 58.74 kcal Atomic # 6 Polarization: -49.85 SS G_CDS: 2.98 Total: -46.87 kcal Atomic # 7 Polarization: -111.38 SS G_CDS: -2.16 Total: -113.54 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Total: -61.68 1.65 -60.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127556888.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.933 kcal (2) G-P(sol) polarization free energy of solvation -61.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds